3NME - JenaLib

Title :   STRUCTURE OF A PLANT PHOSPHATASE

Authors :   C. W. Vander Kooi

Date :   22 Jun 10 (Deposition) - 11 Aug 10 (Release) - 27 Oct 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.40

Chains :   Asym./Biol. Unit : A,B

Keywords :   Phosphatase, Dual Specificity Phosphatase, Carbohydrate Binding, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. W. Vander Kooi, A. O. Taylor, R. M. Pace, D. A. Meekins, H. F. Guo, Y. Kim, M. S. Gentry
Structural Basis For The Glucan Phosphatase Activity Of Starch Excess4.
Proc. Natl. Acad. Sci. Usa V. 107 15379 2010
PubMed-ID: 20679247 | Reference-DOI: 10.1073/PNAS.1009386107

Compounds

Molecule 1 - SEX4 GLUCAN PHOSPHATASE
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 90-379
	Gene	:	AT3G52180
	Mutation	:	YES
	Organism Common	:	MOUSE-EAR CRESS
	Organism Scientific	:	ARABIDOPSIS THALIANA
	Organism Taxid	:	3702
	Synonym	:	PTPKIS1 PROTEIN

Structural Features

Chains, Units

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (2, 14)

Asymmetric/Biological Unit (2, 14)

No.	Name	Count	Type	Full Name
1	MSE	12	Mod. Amino Acid	SELENOMETHIONINE
2	PO4	2	Ligand/Ion	PHOSPHATE ION

Sites (2, 2)

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:166 , SER A:198 , THR A:199 , ALA A:200 , GLY A:201 , MSE A:202 , GLY A:203 , ARG A:204 , HOH A:438	BINDING SITE FOR RESIDUE PO4 A 380
2	AC2	SOFTWARE	ASP B:166 , SER B:198 , THR B:199 , ALA B:200 , GLY B:201 , MSE B:202 , GLY B:203 , ARG B:204	BINDING SITE FOR RESIDUE PO4 B 380

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Asymmetric/Biological Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	TYR_PHOSPHATASE_2	PS50056	Tyrosine specific protein phosphatases family profile.	DSP4_ARATH	174-232	2	A:174-232 B:174-232

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:290
 aligned with DSP4_ARATH | Q9FEB5 from UniProtKB/Swiss-Prot  Length:379

    Alignment length:290
                                    99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379
           DSP4_ARATH    90 YRHELGMNYNFIRPDLIVGSCLQTPEDVDKLRKIGVKTIFCLQQDPDLEYFGVDISSIQAYAKKYSDIQHIRCEIRDFDAFDLRMRLPAVVGTLYKAVKRNGGVTYVHCTAGMGRAPAVALTYMFWVQGYKLMEAHKLLMSKRSCFPKLDAIRNATIDILTGLKRKTVTLTLKDKGFSRVEISGLDIGWGQRIPLTLDKGTGFWILKRELPEGQFEYKYIIDGEWTHNEAEPFIGPNKDGHTNNYAKVVDDPTSVDGTTRERLSSEDPELLEEERSKLIQFLETCSEAEV 379
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh..eeeee..eeee.....hhhhhhhhhh.eeeeee..hhhhhhhh..hhhhhhhhhhh....eeee......hhhhhhhhhhhhhhhhhhhhhhhh.eeeee.....hhhhhhhhhhhhhh...hhhhhhhhhhhhh....hhhhhhhhhhhhhhh...eeeeeeee......eeeee...eeeeeee.ee.....eeeeeeee..eeeeeeeee..eee......ee........eeeeee.........hhhhhhh......hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------TYR_PHOSPHATASE_2  PDB: A:174-232 UniProt: 174-232         --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nme A  90 YRHELGmNYNFIRPDLIVGSCLQTPEDVDKLRKIGVKTIFCLQQDPDLEYFGVDISSIQAYAKKYSDIQHIRCEIRDFDAFDLRmRLPAVVGTLYKAVKRNGGVTYVHSTAGmGRAPAVALTYmFWVQGYKLmEAHKLLmSKRSCFPKLDAIRNATIDILTGLKRKTVTLTLKDKGFSRVEISGLDIGWGQRIPLTLGKGTGFWILKRELPEGQFEYKYIIDGEWTHNEAEPFIGPNKDGHTNNYAKVVDDPTSVDGTTRERLSSEDPELLEEERSKLIQFLETCSEAEV 379
                                  | 99       109       119       129       139       149       159       169    |  179       189       199  |    209   |   219  |    229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379
                                 96-MSE                                                                       174-MSE                     202-MSE    213-MSE  222-MSE  |                                                                                                                                                      
                                                                                                                                                                     229-MSE

Chain B from PDB  Type:PROTEIN  Length:289
 aligned with DSP4_ARATH | Q9FEB5 from UniProtKB/Swiss-Prot  Length:379

    Alignment length:289
                                    99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369         
           DSP4_ARATH    90 YRHELGMNYNFIRPDLIVGSCLQTPEDVDKLRKIGVKTIFCLQQDPDLEYFGVDISSIQAYAKKYSDIQHIRCEIRDFDAFDLRMRLPAVVGTLYKAVKRNGGVTYVHCTAGMGRAPAVALTYMFWVQGYKLMEAHKLLMSKRSCFPKLDAIRNATIDILTGLKRKTVTLTLKDKGFSRVEISGLDIGWGQRIPLTLDKGTGFWILKRELPEGQFEYKYIIDGEWTHNEAEPFIGPNKDGHTNNYAKVVDDPTSVDGTTRERLSSEDPELLEEERSKLIQFLETCSEAE 378
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh..eeeee..eeee.....hhhhhhhhhh.eeeeee..hhhhhhhh..hhhhhhhhhhh....eeee......hhhhhhhhhhhhhhhhhhhhhhhh.eeeee.....hhhhhhhhhhhhhh...hhhhhhhhhhhhh....hhhhhhhhhhhhhhh...eeeeeeee......eeeee...eeeeeee.ee.....eeeeeeee..eeeeeeeee...ee......ee........eeeeee.....hhhhhhhhhhh......hhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------TYR_PHOSPHATASE_2  PDB: B:174-232 UniProt: 174-232         -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nme B  90 YRHELGmNYNFIRPDLIVGSCLQTPEDVDKLRKIGVKTIFCLQQDPDLEYFGVDISSIQAYAKKYSDIQHIRCEIRDFDAFDLRmRLPAVVGTLYKAVKRNGGVTYVHSTAGmGRAPAVALTYmFWVQGYKLmEAHKLLmSKRSCFPKLDAIRNATIDILTGLKRKTVTLTLKDKGFSRVEISGLDIGWGQRIPLTLGKGTGFWILKRELPEGQFEYKYIIDGEWTHNEAEPFIGPNKDGHTNNYAKVVDDPTSVDGTTRERLSSEDPELLEEERSKLIQFLETCSEAE 378
                                  | 99       109       119       129       139       149       159       169    |  179       189       199  |    209   |   219  |    229       239       249       259       269       279       289       299       309       319       329       339       349       359       369         
                                 96-MSE                                                                       174-MSE                     202-MSE    213-MSE  222-MSE  |                                                                                                                                                     
                                                                                                                                                                     229-MSE

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (15, 15)

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