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Title :   THE CRYSTAL STRUCTURE OF GLUTATHIONE S-TRANSFERASE FROM LEGIONELLA PNEUMOPHILA

Authors :   Z. Zhang, S. K. Burley, S. Swaminathan, New York Sgx Research Cente Structural Genomics (Nysgxrc)

Date :   16 Jun 10 (Deposition) - 14 Jul 10 (Release) - 14 Jul 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Structural Genomics, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Sgx, Psi, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Z. Zhang, S. K. Burley, S. Swaminathan
The Crystal Structure Of Glutathione S-Transferase From Legionella Pneumophila
To Be Published
PubMed: search

Molecule 1 - GLUTATHIONE S-TRANSFERASE
	Chains	:	A, B, C, D
	EC Number	:	5.2.1.2
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	BC-PSGX3(BC)
	Expression System Strain	:	BL21(DE3) CODON+RIL STRATAGENE
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	LPG2280
	Organism Scientific	:	LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA STR. PHILADELPHIA 1
	Organism Taxid	:	272624

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 24)

No.	Name	Count	Type	Full Name
1	MSE	24	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (1, 12)

No.	Name	Count	Type	Full Name
1	MSE	12	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (1, 12)

No.	Name	Count	Type	Full Name
1	MSE	12	Mod. Amino Acid	SELENOMETHIONINE

(no "Site" information available for 3NIV)

Asymmetric Unit

No.	Residues
1	C:103	-	D:103

Asymmetric Unit

No.	Residues
1	Val A:54	-	Pro A:55
2	Val B:54	-	Pro B:55
3	Val C:54	-	Pro C:55
4	Val D:54	-	Pro D:55

(no "SAP(SNP)/Variant" information available for 3NIV)

(no "PROSITE Motif" information available for 3NIV)

(no "Exon" information available for 3NIV)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:191
 aligned with Q5ZT82_LEGPH | Q5ZT82 from UniProtKB/TrEMBL  Length:212

    Alignment length:210
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211
         Q5ZT82_LEGPH     2 ILYDYFRSTACYRVRIALNLKKIAYEKIEVHLVNNGGEQHSLQYHQINPQELVPSLDINGQILSQSMAIIDYLEEIHPEMPLLPKDPFMKATLKSMALIVACDMHPLNNLRVLNRLKEQFNANEEQVLEWYHHWLKTGFDAFEEKLGALERDKPVCFGSEVGLADVCLIPQVYNAHRFHFDMASYPIINEINEYCLTLPAFHDAAPEAIS 211
               SCOP domains d3niva1 A:2-81 automated matches                                                d3niva2 A:82-211 automated matches                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee...hhhhhhhhhhhhhh.....eee...-------------------...eeee..eeeehhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.hhhhhh.hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3niv A   2 ILYDYFRSTACYRVRIALNLKKIAYEKIEVHL-------------------LVPSLDINGQILSQSmAIIDYLEEIHPEmPLLPKDPFmKATLKSmALIVACDmHPLNNLRVLNRLKEQFNANEEQVLEWYHHWLKTGFDAFEEKLGALERDKPVCFGSEVGLADVCLIPQVYNAHRFHFDmASYPIINEINEYCLTLPAFHDAAPEAIS 211
                                    11        21        31 |       -         - |      61      | 71        81        91     | 101   |   111       121       131       141       151       161       171       181 |     191       201       211
                                                          33                  53             68-MSE       81-MSE   90-MSE 97-MSE 105-MSE                                                                       183-MSE

Chain B from PDB  Type:PROTEIN  Length:188
 aligned with Q5ZT82_LEGPH | Q5ZT82 from UniProtKB/TrEMBL  Length:212

    Alignment length:210
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210
         Q5ZT82_LEGPH     1 MILYDYFRSTACYRVRIALNLKKIAYEKIEVHLVNNGGEQHSLQYHQINPQELVPSLDINGQILSQSMAIIDYLEEIHPEMPLLPKDPFMKATLKSMALIVACDMHPLNNLRVLNRLKEQFNANEEQVLEWYHHWLKTGFDAFEEKLGALERDKPVCFGSEVGLADVCLIPQVYNAHRFHFDMASYPIINEINEYCLTLPAFHDAAPEAI 210
               SCOP domains d3nivb1 B:1-81 automated matche                      s                           d3nivb2 B:82-210 automated matches                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee...hhhhhhhhhhhhhh...eeeee.----------------------..eeee..eee.hhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhh......hhhhhhhhhhhh.hhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3niv B   1 LILYDYFRSTACYRVRIALNLKKIAYEKIEV----------------------VPSLDINGQILSQSmAIIDYLEEIHPEmPLLPKDPFmKATLKSmALIVACDmHPLNNLRVLNRLKEQFNANEEQVLEWYHHWLKTGFDAFEEKLGALERDKPVCFGSEVGLADVCLIPQVYNAHRFHFDmASYPIINEINEYCLTLPAFHDAAPEAI 210
                                    10        20        30|        -         -   |    60       |70        80|       90      |100    |  110       120       130       140       150       160       170       180  |    190       200       210
                                                         31                     54            68-MSE       81-MSE   90-MSE 97-MSE 105-MSE                                                                       183-MSE

Chain C from PDB  Type:PROTEIN  Length:191
 aligned with Q5ZT82_LEGPH | Q5ZT82 from UniProtKB/TrEMBL  Length:212

    Alignment length:208
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200        
         Q5ZT82_LEGPH     1 MILYDYFRSTACYRVRIALNLKKIAYEKIEVHLVNNGGEQHSLQYHQINPQELVPSLDINGQILSQSMAIIDYLEEIHPEMPLLPKDPFMKATLKSMALIVACDMHPLNNLRVLNRLKEQFNANEEQVLEWYHHWLKTGFDAFEEKLGALERDKPVCFGSEVGLADVCLIPQVYNAHRFHFDMASYPIINEINEYCLTLPAFHDAAPE 208
               SCOP domains d3nivc1 C:1-81 automated matches                                                 d3nivc2 C:82-208 automated matches                                                                                              SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...hhhhhhhhhhhhhh....eeeeeeee.-----------------...eeee..eeeehhhhhhhhhhhhh........hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3niv C   1 LILYDYFRSTACYRVRIALNLKKIAYEKIEVHLVN-----------------LVPSLDINGQILSQSmAIIDYLEEIHPEmPLLPKDPFmKATLKSmALIVACDmHPLNNLRVLNRLKEQFNANEEQVLEWYHHWLKTGFDAFEEKLGALERDKPVCFGSEVGLADVCLIPQVYNAHRFHFDmASYPIINEINEYCLTLPAFHDAAPE 208
                                    10        20        30    |    -         -  |     60       |70        80|       90      |100    |  110       120       130       140       150       160       170       180  |    190       200        
                                                             35                53             68-MSE       81-MSE   90-MSE 97-MSE 105-MSE                                                                       183-MSE

Chain D from PDB  Type:PROTEIN  Length:192
 aligned with Q5ZT82_LEGPH | Q5ZT82 from UniProtKB/TrEMBL  Length:212

    Alignment length:212
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210  
         Q5ZT82_LEGPH     1 MILYDYFRSTACYRVRIALNLKKIAYEKIEVHLVNNGGEQHSLQYHQINPQELVPSLDINGQILSQSMAIIDYLEEIHPEMPLLPKDPFMKATLKSMALIVACDMHPLNNLRVLNRLKEQFNANEEQVLEWYHHWLKTGFDAFEEKLGALERDKPVCFGSEVGLADVCLIPQVYNAHRFHFDMASYPIINEINEYCLTLPAFHDAAPEAISS 212
               SCOP domains d3nivd1 D:1-81 automated matche                    s                             d3nivd2 D:82-212 automated matches                                                                                                  SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --GST_N_3-3nivD01 D:3-85                                                             ------------------------------------------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) --GST_N_3-3nivD02 D:3-85                                                             ------------------------------------------------------------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) --GST_N_3-3nivD03 D:3-85                                                             ------------------------------------------------------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) --GST_N_3-3nivD04 D:3-85                                                             ------------------------------------------------------------------------------------------------------------------------------- Pfam domains (4)
         Sec.struct. author .eeee...hhhhhhhhhhhhhh....eeee.--------------------....eeee..eeeehhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3niv D   1 LILYDYFRSTACYRVRIALNLKKIAYEKIEV--------------------ELVPSLDINGQILSQSmAIIDYLEEIHPEmPLLPKDPFmKATLKSmALIVACDmHPLNNLRVLNRLKEQFNANEEQVLEWYHHWLKTGFDAFEEKLGALERDKPVCFGSEVGLADVCLIPQVYNAHRFHFDmASYPIINEINEYCLTLPAFHDAAPEAISS 212
                                    10        20        30|        -         - |      60       |70        80|       90      |100    |  110       120       130       140       150       160       170       180  |    190       200       210  
                                                         31                   52              68-MSE       81-MSE   90-MSE 97-MSE 105-MSE                                                                       183-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: GST C-terminal domain-like (353)

Superfamily: GST C-terminal domain-like (353)

Family: automated matches (86)

Protein domain: automated matches (86)

Legionella pneumophila [TaxId: 272624] (1)

1a	d3niva2	A:82-211
1b	d3nivb2	B:82-210
1c	d3nivc2	C:82-208
1d	d3nivd2	D:82-212

Class: Alpha and beta proteins (a/b) (23833)

Fold: Thioredoxin fold (994)

Superfamily: Thioredoxin-like (992)

Family: automated matches (347)

Protein domain: automated matches (347)

Legionella pneumophila [TaxId: 272624] (2)

2a	d3niva1	A:2-81
2b	d3nivb1	B:1-81
2c	d3nivc1	C:1-81
2d	d3nivd1	D:1-81

(no "CATH Domain" information available for 3NIV)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Thioredoxin (367)

Family: GST_N_3 (20)

Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) (1)

1a	GST_N_3-3nivD01	D:3-85
1b	GST_N_3-3nivD02	D:3-85
1c	GST_N_3-3nivD03	D:3-85
1d	GST_N_3-3nivD04	D:3-85

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (Q5ZT82_LEGPH | Q5ZT82)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016853	isomerase activity	Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
	GO:0016034	maleylacetoacetate isomerase activity	Catalysis of the reaction: 4-maleylacetoacetate = 4-fumarylacetoacetate.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0009072	aromatic amino acid family metabolic process	The chemical reactions and pathways involving aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan).
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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	Cis Peptide Bonds
		Val A:54 - Pro A:55	[ RasMol ]
		Val B:54 - Pro B:55	[ RasMol ]
		Val C:54 - Pro C:55	[ RasMol ]
		Val D:54 - Pro D:55	[ RasMol ]

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Description

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Ligands, Modified Residues, Ions (1, 24)

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SS Bonds (1, 1)

Cis Peptide Bonds (4, 4)

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