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(-) Description

Title :  THE CRYSTAL STRUCTURE OF A DOMAIN FROM N-ACETYLMURAMOYL-L-ALANINE AMIDASE OF BARTONELLA HENSELAE STR. HOUSTON-1
 
Authors :  K. Tan, E. Rakowski, K. Buck, A. Joachimiak, Midwest Center For Stru Genomics (Mcsg)
Date :  08 Jun 10  (Deposition) - 14 Jul 10  (Release) - 07 Nov 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.24
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. C. Yang, K. Tan, A. Joachimiak, T. G. Bernhardt
A Conformational Switch Controls Cell Wall-Remodelling Enzymes Required For Bacterial Cell Division.
Mol. Microbiol. V. 85 768 2012
PubMed-ID: 22715947  |  Reference-DOI: 10.1111/J.1365-2958.2012.08138.X

(-) Compounds

Molecule 1 - N-ACETYLMURAMOYL-L-ALANINE AMIDASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG19B
    Expression System Strain: PPK1037
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: SEQUENCE DATABASE RESIDUES 179-409
    Gene: AMIB, BH08710
    Organism Scientific: BARTONELLA HENSELAE
    Organism Taxid: 38323
    Strain: HOUSTON-1

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 10)

Asymmetric Unit (5, 10)
No.NameCountTypeFull Name
1ACT3Ligand/IonACETATE ION
2FMT1Ligand/IonFORMIC ACID
3GOL3Ligand/IonGLYCEROL
4MSE2Mod. Amino AcidSELENOMETHIONINE
5ZN1Ligand/IonZINC ION
Biological Unit 1 (4, 18)
No.NameCountTypeFull Name
1ACT6Ligand/IonACETATE ION
2FMT2Ligand/IonFORMIC ACID
3GOL6Ligand/IonGLYCEROL
4MSE4Mod. Amino AcidSELENOMETHIONINE
5ZN-1Ligand/IonZINC ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:188 , GLU A:203 , HIS A:257 , ASP A:259 , GLU A:290BINDING SITE FOR RESIDUE ZN A 1
2AC2SOFTWAREHOH A:51 , HOH A:98 , SER A:337 , ALA A:389 , SER A:390 , TYR A:393BINDING SITE FOR RESIDUE ACT A 410
3AC3SOFTWAREHOH A:74 , HOH A:79 , HOH A:112 , HOH A:136 , SER A:239 , GLU A:240 , GLU A:302 , HOH A:450BINDING SITE FOR RESIDUE ACT A 2
4AC4SOFTWAREHOH A:130 , ARG A:181 , PHE A:248 , LYS A:372 , HOH A:467BINDING SITE FOR RESIDUE ACT A 3
5AC5SOFTWAREHOH A:82 , HOH A:109 , GLU A:217 , ARG A:396BINDING SITE FOR RESIDUE FMT A 411
6AC6SOFTWAREHOH A:8 , ARG A:316 , HIS A:320 , LEU A:354 , LYS A:355 , ALA A:356 , MSE A:406BINDING SITE FOR RESIDUE GOL A 412
7AC7SOFTWAREHOH A:46 , HOH A:92 , HOH A:140 , ASN A:325 , GLN A:397 , PHE A:398 , HOH A:479BINDING SITE FOR RESIDUE GOL A 413
8AC8SOFTWARETHR A:315 , GLU A:318 , THR A:319 , ASP A:358 , PRO A:360 , HOH A:482BINDING SITE FOR RESIDUE GOL A 414

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3NE8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3NE8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3NE8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3NE8)

(-) Exons   (0, 0)

(no "Exon" information available for 3NE8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:226
 aligned with A0A0H3M3F4_B | A0A0H3M3F4 from UniProtKB/TrEMBL  Length:409

    Alignment length:232
                                   187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407  
         A0A0H3M3F4_B   178 RSFRVVLDPGHGGIDGGARGVTGILEKDVTLAFARALRDELQKGSHTIVALTRDSDIFLRLSERVKKAQEFDADLFISIHADTIDVHSLRGATVYTISDEASDAIAKSLAESENKVDLLDGLPKEESLELTDILLDLTRRETHAFSINFANNVVSNLSKSHINLINNPHRYADFQVLKAPDVPSVLIEIGYLSNKEDEKLLNNPQWRKQMAASIAYSIRQFAEYRQKIMQPL 409
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee...............hhhhhhhhhhhhhhhhhhhh..eeeee........hhhhhhhhhhhh...eeeeee...........eeeeee.....hhhhhhhhhhhhhhhhhhh....------hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeee.hhhhh.....eeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ne8 A 178 ASFRVVLDPGHGGIDGGARGVTGILEKDVTLAFARALRDELQKGSHTIVALTRDSDIFLRLSERVKKAQEFDADLFISIHADTIDVHSLRGATVYTISDEASDAIAKSLAESENKVDLLDGLPKE------DILLDLTRRETHAFSINFANNVVSNLSKSHINLINNPHRYADFQVLKAPDVPSVLIEIGYLSNKEDEKLLNNPQWRKQmAASIAYSIRQFAEYRQKImQPL 409
                                   187       197       207       217       227       237       247       257       267       277       287       297    |    - |     317       327       337       347       357       367       377       387       397       407  
                                                                                                                                                      302    309                                                                           387-MSE            406-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3NE8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3NE8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3NE8)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3NE8)

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