3N9R - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   CLASS II FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE FROM HELICOBACTER PYLORI IN COMPLEX WITH N-(4-HYDROXYBUTYL)-PHOSPHOGLYCOLOHYDROXAMIC ACID, A COMPETITIVE INHIBITOR

Authors :   M. Coincon, S. Sygusch

Date :   31 May 10 (Deposition) - 17 Nov 10 (Release) - 24 Nov 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym. Unit : A,B,K,P,U,Z,e,j
Biol. Unit 1: A,e  (1x)
Biol. Unit 2: B (1x),j (1x)
Biol. Unit 3: K (1x),Z (1x)
Biol. Unit 4: P (1x),U (1x)

Keywords :   Fbp Aldolase, Class Ii, Inhibitor, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. Daher, M. Fonvielle, P. M. Gest, M. E. Guerin, M. Jackson, J. Sygusch M. Therisod
Rational Design, Synthesis, And Evaluation Of New Selective Inhibitors Of Microbial Class Ii (Zinc Dependent) Fructose Bis-Phosphate Aldolases.
J. Med. Chem. V. 53 7836 2010
PubMed-ID: 20929256 | Reference-DOI: 10.1021/JM1009814

Molecule 1 - FRUCTOSE-BISPHOSPHATE ALDOLASE
	Chains	:	A, B, K, P, U, Z, e, j
	EC Number	:	4.1.2.13
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PKK233-3
	Expression System Strain	:	JM109
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	ALF_HELPY
	Organism Scientific	:	HELICOBACTER PYLORI
	Organism Taxid	:	290847
	Strain	:	51

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	K	P	U	Z	e	j
Biological Unit 1 (1x)	:	A						e
Biological Unit 2 (1x)	:		B (1x)						j (1x)
Biological Unit 3 (1x)	:			K (1x)			Z (1x)
Biological Unit 4 (1x)	:				P (1x)	U (1x)

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 32)

No.	Name	Count	Type	Full Name
1	CL	8	Ligand/Ion	CHLORIDE ION
2	NA	8	Ligand/Ion	SODIUM ION
3	TD3	8	Ligand/Ion	2-[HYDROXY(4-HYDROXYBUTYL)AMINO]-2-OXOETHYL DIHYDROGENPHOSPHATE
4	ZN	8	Ligand/Ion	ZINC ION

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	NA	-1	Ligand/Ion	SODIUM ION
3	TD3	2	Ligand/Ion	2-[HYDROXY(4-HYDROXYBUTYL)AMINO]-2-OXOETHYL DIHYDROGENPHOSPHATE
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	NA	-1	Ligand/Ion	SODIUM ION
3	TD3	1	Ligand/Ion	2-[HYDROXY(4-HYDROXYBUTYL)AMINO]-2-OXOETHYL DIHYDROGENPHOSPHATE
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	NA	-1	Ligand/Ion	SODIUM ION
3	TD3	1	Ligand/Ion	2-[HYDROXY(4-HYDROXYBUTYL)AMINO]-2-OXOETHYL DIHYDROGENPHOSPHATE
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 4 (1, 1)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	NA	-1	Ligand/Ion	SODIUM ION
3	TD3	1	Ligand/Ion	2-[HYDROXY(4-HYDROXYBUTYL)AMINO]-2-OXOETHYL DIHYDROGENPHOSPHATE
4	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (32, 32)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:83 , HIS A:180 , HIS A:210 , TD3 A:311	BINDING SITE FOR RESIDUE ZN A 308
02	AC2	SOFTWARE	GLN A:47 , HIS A:80 , ASP A:82 , MET A:102 , GLU A:132 , HIS A:210 , LYS A:251 , ASN A:253	BINDING SITE FOR RESIDUE NA A 309
03	AC3	SOFTWARE	ASP A:104 , SER A:106 , GLU A:134 , HOH A:328 , HOH A:657 , HOH A:932 , HOH A:1126	BINDING SITE FOR RESIDUE CL A 310
04	AC4	SOFTWARE	HIS A:83 , HIS A:180 , GLY A:181 , LYS A:184 , HIS A:210 , GLY A:211 , ALA A:212 , SER A:213 , ASN A:253 , ASP A:255 , THR A:256 , ZN A:308 , HOH A:374 , HOH A:807 , HOH A:2493	BINDING SITE FOR RESIDUE TD3 A 311
05	AC5	SOFTWARE	HIS B:83 , HIS B:180 , HIS B:210 , TD3 B:311	BINDING SITE FOR RESIDUE ZN B 308
06	AC6	SOFTWARE	GLN B:47 , HIS B:80 , ASP B:82 , MET B:102 , GLU B:132 , HIS B:210 , LYS B:251 , ASN B:253	BINDING SITE FOR RESIDUE NA B 309
07	AC7	SOFTWARE	ASP B:104 , SER B:106 , GLU B:134 , HOH B:336 , HOH B:814 , HOH B:971 , HOH B:1010	BINDING SITE FOR RESIDUE CL B 310
08	AC8	SOFTWARE	HIS B:83 , HIS B:180 , GLY B:181 , LYS B:184 , HIS B:210 , GLY B:211 , ALA B:212 , SER B:213 , ASN B:253 , ASP B:255 , THR B:256 , ZN B:308 , HOH B:641 , HOH B:779 , HOH B:1770	BINDING SITE FOR RESIDUE TD3 B 311
09	AC9	SOFTWARE	HIS K:83 , HIS K:180 , HIS K:210 , TD3 K:311	BINDING SITE FOR RESIDUE ZN K 308
10	BC1	SOFTWARE	GLN K:47 , HIS K:80 , ASP K:82 , MET K:102 , GLU K:132 , HIS K:210 , LYS K:251 , ASN K:253	BINDING SITE FOR RESIDUE NA K 309
11	BC2	SOFTWARE	ASP K:104 , SER K:106 , GLU K:134 , HOH K:330 , HOH K:589 , HOH K:1424 , HOH K:1565	BINDING SITE FOR RESIDUE CL K 310
12	BC3	SOFTWARE	HIS K:83 , HIS K:180 , GLY K:181 , LYS K:184 , HIS K:210 , GLY K:211 , ALA K:212 , SER K:213 , ASN K:253 , ASP K:255 , THR K:256 , ZN K:308 , HOH K:2453	BINDING SITE FOR RESIDUE TD3 K 311
13	BC4	SOFTWARE	HIS P:83 , HIS P:180 , HIS P:210 , TD3 P:311	BINDING SITE FOR RESIDUE ZN P 308
14	BC5	SOFTWARE	GLN P:47 , HIS P:80 , ASP P:82 , MET P:102 , GLU P:132 , HIS P:210 , LYS P:251 , ASN P:253	BINDING SITE FOR RESIDUE NA P 309
15	BC6	SOFTWARE	ASP P:104 , SER P:106 , GLU P:134 , HOH P:339 , HOH P:397 , HOH P:1789 , HOH P:2376	BINDING SITE FOR RESIDUE CL P 310
16	BC7	SOFTWARE	HOH A:2012 , ASP P:82 , HIS P:83 , HIS P:180 , GLY P:181 , LYS P:184 , HIS P:210 , GLY P:211 , ALA P:212 , SER P:213 , ASN P:253 , ASP P:255 , THR P:256 , ZN P:308 , HOH P:435	BINDING SITE FOR RESIDUE TD3 P 311
17	BC8	SOFTWARE	HIS U:83 , HIS U:180 , HIS U:210 , TD3 U:311	BINDING SITE FOR RESIDUE ZN U 308
18	BC9	SOFTWARE	GLN U:47 , HIS U:80 , ASP U:82 , MET U:102 , GLU U:132 , HIS U:210 , LYS U:251 , ASN U:253	BINDING SITE FOR RESIDUE NA U 309
19	CC1	SOFTWARE	ASP U:104 , SER U:106 , GLU U:134 , HOH U:355 , HOH U:826	BINDING SITE FOR RESIDUE CL U 310
20	CC2	SOFTWARE	ASN U:23 , ASP U:82 , HIS U:83 , HIS U:180 , GLY U:181 , LYS U:184 , HIS U:210 , GLY U:211 , ALA U:212 , SER U:213 , ASN U:253 , ASP U:255 , THR U:256 , ZN U:308	BINDING SITE FOR RESIDUE TD3 U 311
21	CC3	SOFTWARE	HIS Z:83 , HIS Z:180 , HIS Z:210 , TD3 Z:311	BINDING SITE FOR RESIDUE ZN Z 308
22	CC4	SOFTWARE	GLN Z:47 , HIS Z:80 , ASP Z:82 , MET Z:102 , GLU Z:132 , HIS Z:210 , LYS Z:251 , ASN Z:253	BINDING SITE FOR RESIDUE NA Z 309
23	CC5	SOFTWARE	ASP Z:104 , SER Z:106 , GLU Z:134 , HOH Z:324 , HOH Z:1520 , HOH Z:1875	BINDING SITE FOR RESIDUE CL Z 310
24	CC6	SOFTWARE	ASP Z:82 , HIS Z:83 , HIS Z:180 , GLY Z:181 , LYS Z:184 , HIS Z:210 , GLY Z:211 , ALA Z:212 , SER Z:213 , ASN Z:253 , ASP Z:255 , THR Z:256 , ZN Z:308 , HOH Z:1876 , HOH Z:1983	BINDING SITE FOR RESIDUE TD3 Z 311
25	CC7	SOFTWARE	HIS e:83 , HIS e:180 , HIS e:210 , TD3 e:311	BINDING SITE FOR RESIDUE ZN e 308
26	CC8	SOFTWARE	HIS e:80 , ASP e:82 , MET e:102 , GLU e:132 , HIS e:210 , LYS e:251 , ASN e:253	BINDING SITE FOR RESIDUE NA e 309
27	CC9	SOFTWARE	ASP e:104 , SER e:106 , GLU e:134 , HOH e:464	BINDING SITE FOR RESIDUE CL e 310
28	DC1	SOFTWARE	ASN e:23 , ASP e:82 , HIS e:83 , HIS e:180 , GLY e:181 , LYS e:184 , HIS e:210 , GLY e:211 , ALA e:212 , SER e:213 , ASN e:253 , ASP e:255 , THR e:256 , ZN e:308	BINDING SITE FOR RESIDUE TD3 e 311
29	DC2	SOFTWARE	HIS j:83 , HIS j:180 , HIS j:210 , TD3 j:311	BINDING SITE FOR RESIDUE ZN j 308
30	DC3	SOFTWARE	GLN j:47 , HIS j:80 , ASP j:82 , MET j:102 , GLU j:132 , HIS j:210 , LYS j:251 , ASN j:253	BINDING SITE FOR RESIDUE NA j 309
31	DC4	SOFTWARE	ASP j:104 , SER j:106 , GLU j:134 , HOH j:943 , HOH j:1427	BINDING SITE FOR RESIDUE CL j 310
32	DC5	SOFTWARE	ASP j:82 , HIS j:83 , HIS j:180 , GLY j:181 , LYS j:184 , HIS j:210 , GLY j:211 , ALA j:212 , SER j:213 , ASN j:253 , ASP j:255 , THR j:256 , ZN j:308 , HOH j:350 , HOH j:1682	BINDING SITE FOR RESIDUE TD3 j 311

(no "SS Bond" information available for 3N9R)

(no "Cis Peptide Bond" information available for 3N9R)

(no "SAP(SNP)/Variant" information available for 3N9R)

(no "PROSITE Motif" information available for 3N9R)

(no "Exon" information available for 3N9R)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:297
 aligned with D0IR47_HELP1 | D0IR47 from UniProtKB/TrEMBL  Length:307

    Alignment length:307
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       
         D0IR47_HELP1     1 MLVKGNEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDDVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSANKI 307
               SCOP domains d3n9ra_ A: automated matches                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhhhhhhhhhh....eeeeeeee.hhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhhhhhh..eeeeee......----------....hhhhhhhhhhhhh..eeee.................hhhhhhhhhhhhh..eee......hhhhhhhhhhh..........hhhhhhhhhhh.eeeeeehhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3n9r A   1 MLVKGNEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGI----------AVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDNVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSANKI 307
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140|        - |     160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       
                                                                                                                                                                      141        152

Chain B from PDB  Type:PROTEIN  Length:297
 aligned with D0IR47_HELP1 | D0IR47 from UniProtKB/TrEMBL  Length:307

    Alignment length:307
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       
         D0IR47_HELP1     1 MLVKGNEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDDVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSANKI 307
               SCOP domains d3n9rb_ B: automated matches                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhhhhhhhhhh....eeeeeeee.hhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhhhhhh..eeeeee......----------....hhhhhhhhhhhhh..eeee.................hhhhhhhhhhhhh..eee......hhhhhhhhhhh..........hhhhhhhhhhh.eeeeeehhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3n9r B   1 MLVKGNEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGI----------AVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDNVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSANKI 307
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140|        - |     160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       
                                                                                                                                                                      141        152

Chain K from PDB  Type:PROTEIN  Length:297
 aligned with D0IR47_HELP1 | D0IR47 from UniProtKB/TrEMBL  Length:307

    Alignment length:307
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       
         D0IR47_HELP1     1 MLVKGNEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDDVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSANKI 307
               SCOP domains d3n9rk_ K: automated matches                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhhhhhhhhhh....eeeeeeee.hhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhhhhhh..eeeeee......----------....hhhhhhhhhhhhh..eeee.................hhhhhhhhhhhhh..eee......hhhhhhhhhhh..........hhhhhhhhhhh.eeeeeehhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3n9r K   1 MLVKGNEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGI----------AVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDNVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSANKI 307
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140|        - |     160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       
                                                                                                                                                                      141        152

Chain P from PDB  Type:PROTEIN  Length:297
 aligned with D0IR47_HELP1 | D0IR47 from UniProtKB/TrEMBL  Length:307

    Alignment length:307
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       
         D0IR47_HELP1     1 MLVKGNEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDDVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSANKI 307
               SCOP domains d3n9rp_ P: automated matches                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhhhhhhhhhh....eeeeeeee.hhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhhhhhh..eeeeee......----------....hhhhhhhhhhhhh..eeee.................hhhhhhhhhhhhh..eee......hhhhhhhhhhh..........hhhhhhhhhhh.eeeeeehhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3n9r P   1 MLVKGNEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGI----------AVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDNVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSANKI 307
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140|        - |     160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       
                                                                                                                                                                      141        152

Chain U from PDB  Type:PROTEIN  Length:297
 aligned with D0IR47_HELP1 | D0IR47 from UniProtKB/TrEMBL  Length:307

    Alignment length:307
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       
         D0IR47_HELP1     1 MLVKGNEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDDVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSANKI 307
               SCOP domains d3n9ru_ U: automated matches                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhhhhhhhhhh....eeeeeeee.hhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhhhhhh..eeeeee......----------....hhhhhhhhhhhhh..eeee.................hhhhhhhhhhhhh..eee......hhhhhhhhhhh..........hhhhhhhhhhhheeeeeehhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3n9r U   1 MLVKGNEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGI----------AVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDNVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSANKI 307
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140|        - |     160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       
                                                                                                                                                                      141        152

Chain Z from PDB  Type:PROTEIN  Length:297
 aligned with D0IR47_HELP1 | D0IR47 from UniProtKB/TrEMBL  Length:307

    Alignment length:307
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       
         D0IR47_HELP1     1 MLVKGNEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDDVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSANKI 307
               SCOP domains d3n9rz_ Z: automated matches                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) F_bP_aldolase-3n9rZ01 Z:1-307                                                                                                                                                                                                                                                                                       Pfam domains (1)
           Pfam domains (2) F_bP_aldolase-3n9rZ02 Z:1-307                                                                                                                                                                                                                                                                                       Pfam domains (2)
           Pfam domains (3) F_bP_aldolase-3n9rZ03 Z:1-307                                                                                                                                                                                                                                                                                       Pfam domains (3)
           Pfam domains (4) F_bP_aldolase-3n9rZ04 Z:1-307                                                                                                                                                                                                                                                                                       Pfam domains (4)
           Pfam domains (5) F_bP_aldolase-3n9rZ05 Z:1-307                                                                                                                                                                                                                                                                                       Pfam domains (5)
           Pfam domains (6) F_bP_aldolase-3n9rZ06 Z:1-307                                                                                                                                                                                                                                                                                       Pfam domains (6)
           Pfam domains (7) F_bP_aldolase-3n9rZ07 Z:1-307                                                                                                                                                                                                                                                                                       Pfam domains (7)
           Pfam domains (8) F_bP_aldolase-3n9rZ08 Z:1-307                                                                                                                                                                                                                                                                                       Pfam domains (8)
         Sec.struct. author ...hhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhhhhhhhhhh....eeeeeeee.hhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhhhhhhh.eeeeee......----------....hhhhhhhhhhhhh..eeee.................hhhhhhhhhhhhh..eee......hhhhhhhhhhh..........hhhhhhhhhhhheeeeeehhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3n9r Z   1 MLVKGNEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGI----------AVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDNVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSANKI 307
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140|        - |     160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       
                                                                                                                                                                      141        152

Chain e from PDB  Type:PROTEIN  Length:297
 aligned with D0IR47_HELP1 | D0IR47 from UniProtKB/TrEMBL  Length:307

    Alignment length:307
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       
         D0IR47_HELP1     1 MLVKGNEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDDVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSANKI 307
               SCOP domains d3n9re_ e: automated matches                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhhhhhhhhhh....eeeeeeee.hhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhhhhhh..eeeeee......----------....hhhhhhhhhhhhh..eeee.................hhhhhhhhhhhhh..eee......hhhhhhhhhhh..........hhhhhhhhhhh.eeeeeehhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3n9r e   1 MLVKGNEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGI----------AVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDNVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSANKI 307
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140|        - |     160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       
                                                                                                                                                                      141        152

Chain j from PDB  Type:PROTEIN  Length:297
 aligned with D0IR47_HELP1 | D0IR47 from UniProtKB/TrEMBL  Length:307

    Alignment length:307
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       
         D0IR47_HELP1     1 MLVKGNEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDDVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSANKI 307
               SCOP domains d3n9rj_ j: automated matches                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhh...eeeeeehhhhhhhhhhhhhhhhhhhhhhh....eeeeeeee.hhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhhhhhh..eeeeee......----------....hhhhhhhhhhhhh..eeee.................hhhhhhhhhhhhh..eee......hhhhhhhhhhh..........hhhhhhhhhhhheeeeeehhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3n9r j   1 MLVKGNEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGI----------AVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDNVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSANKI 307
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140|        - |     160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       
                                                                                                                                                                      141        152

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: TIM beta/alpha-barrel (3956)

Superfamily: Aldolase (457)

Family: automated matches (113)

Protein domain: automated matches (113)

Helicobacter pylori [TaxId: 290847] (2)

1a	d3n9ra_	A:
1b	d3n9rb_	B:
1c	d3n9re_	e:
1d	d3n9rj_	j:
1e	d3n9rk_	K:
1f	d3n9rp_	P:
1g	d3n9ru_	U:
1h	d3n9rz_	Z:

(no "CATH Domain" information available for 3N9R)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: TIM_barrel (694)

Family: F_bP_aldolase (7)

Helicobacter pylori (strain 51) (2)

1a	F_bP_aldolase-3n9rZ01	Z:1-307
1b	F_bP_aldolase-3n9rZ02	Z:1-307
1c	F_bP_aldolase-3n9rZ03	Z:1-307
1d	F_bP_aldolase-3n9rZ04	Z:1-307
1e	F_bP_aldolase-3n9rZ05	Z:1-307
1f	F_bP_aldolase-3n9rZ06	Z:1-307
1g	F_bP_aldolase-3n9rZ07	Z:1-307
1h	F_bP_aldolase-3n9rZ08	Z:1-307

Asymmetric Unit(hide GO term definitions)

Chain A,B,K,P,U,Z,e,j (D0IR47_HELP1 | D0IR47)

molecular function
	GO:0016832	aldehyde-lyase activity	Catalysis of the cleavage of a C-C bond in a molecule containing a hydroxyl group and a carbonyl group to form two smaller molecules, each being an aldehyde or a ketone.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0004332	fructose-bisphosphate aldolase activity	Catalysis of the reaction: D-fructose 1,6-bisphosphate = glycerone phosphate + D-glyceraldehyde-3-phosphate.
	GO:0016829	lyase activity	Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0030388	fructose 1,6-bisphosphate metabolic process	The chemical reactions and pathways involving fructose 1,6-bisphosphate, also known as FBP. The D enantiomer is a metabolic intermediate in glycolysis and gluconeogenesis.
	GO:0006096	glycolytic process	The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules.

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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3n9r)

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	3n9r
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	D0IR47_HELP1 \| D0IR47	:	3n9s

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 32)

Sites (32, 32)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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SCOP Domains (1, 8)

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