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(-) Description

Title :  CRYSTAL STRUCTURE OF A STRUCTURAL GENOMICS, UNKNOWN FUNCTION (BACOVA_03430) FROM BACTEROIDES OVATUS AT 2.40 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  28 May 10  (Deposition) - 28 Jul 10  (Release) - 28 Jul 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A
Keywords :  Domain Of Unknown Function (Duf1735), Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Structural Genomics, Unknown Functio (Bacova_03430) From Bacteroides Ovatus At 2. 40 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BACOVA_03430
    Organism Scientific: BACTEROIDES OVATUS
    Organism Taxid: 411476
    Strain: ATCC 8483

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric/Biological Unit (3, 9)
No.NameCountTypeFull Name
12PE3Ligand/IonNONAETHYLENE GLYCOL
2CA1Ligand/IonCALCIUM ION
3MSE5Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:31 , GLN A:33 , GLU A:141 , ASP A:161 , HOH A:370BINDING SITE FOR RESIDUE CA A 1
2AC2SOFTWARELYS A:67 , MSE A:126 , HIS A:210 , ALA A:211 , THR A:212 , SER A:217 , ALA A:321 , HOH A:461BINDING SITE FOR RESIDUE 2PE A 2
3AC3SOFTWARETYR A:36 , GLN A:186 , HOH A:433BINDING SITE FOR RESIDUE 2PE A 3
4AC4SOFTWARESER A:285 , LYS A:287 , VAL A:289BINDING SITE FOR RESIDUE 2PE A 4

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3N91)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3N91)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3N91)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3N91)

(-) Exons   (0, 0)

(no "Exon" information available for 3N91)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:315
 aligned with A7M003_BACO1 | A7M003 from UniProtKB/TrEMBL  Length:344

    Alignment length:315
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339     
         A7M003_BACO1    30 FDYQTVYFANQYGLRTIELGESEFVDNTLDNQHKMVIKAAWGGGYTNRNNVVINFKVDESLCDNLYFKDTDQPLVPMPASYYTLASDRIAIPKGQIMAGVEVQLTDDFFADEKSISENYVIPLLMTNVQGADSILQGKPVVENPVLTNAGDWSILPQNFVLYAVKYVNPWHGEYLRRGIDHATVAGTSKDIIRHEQFVENDEVVNISTKSMKDNLLTLKTKDESGKDISYTVRLSFAEDGSCTVHSGSQNVVVSGSGKFVSKGEKNSLGGKDRNAIYLDYTVNLTDNNIQLATKDTLVLRTRNVYGGKSLEVVRK 344
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee....eeeeeee........hhhhhh.eeeeeeeee........eeeeeee.hhhhh..ee.......ee.hhh.eee...eeee.....eeeeeeeehhhhhhhhhhhh..eeeeeeeeeee...ee...ee........hhh.eee....eeeeeeeee....eeeeeeeeeeeee..eeeeeee...hhhhheeeeeee....eeeeeeeee.....eeeeeeeeee....eeeeee.....eeeeeeeeeeeee..hhhhh.eeeeeeeeeeee....eeeeeeeeeeeee.....eee..ee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3n91 A  30 FDYQTVYFANQYGLRTIELGESEFVDNTLDNQHKmVIKAAWGGGYTNRNNVVINFKVDESLCDNLYFKDTDQPLVPmPASYYTLASDRIAIPKGQImAGVEVQLTDDFFADEKSISENYVIPLLmTNVQGADSILQGKPVVENPVLTNAGDWSILPQNFVLYAVKYVNPWHGEYLRRGIDHATVAGTSKDIIRHEQFVENDEVVNISTKSmKDNLLTLKTKDESGKDISYTVRLSFAEDGSCTVHSGSQNVVVSGSGKFVSKGEKNSLGGKDRNAIYLDYTVNLTDNNIQLATKDTLVLRTRNVYGGKSLEVVRK 344
                                    39        49        59    |   69        79        89        99      |109       119      |129       139       149    |  159       169       179       189       199       209       219       229       239|      249       259       269       279       289       299       309       319       329       339     
                                                             64-MSE                                   106-MSE             126-MSE                     154-MSE                                                                               240-MSE
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3N91)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3N91)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3N91)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (A7M003_BACO1 | A7M003)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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  3n91
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