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(-) Description

Title :  CRYSTAL STRUCTURE OF A MACROPHAGE BINDING PROTEIN FROM COCCIDIOIDES IMMITIS
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  27 May 10  (Deposition) - 16 Jun 10  (Release) - 16 Jun 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (2x)
Keywords :  Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Macrophage, Pathogenic Fungus, Coccidioidomycosis, Valley Fever, Meningitis, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. E. Edwards, J. Abendroth, B. Sankaran, Seattle Structural Genomics Center For Infectious Disease (Ssgcid)
Crystal Structure Of A Macrophage Binding Protein From Coccidioides Immitis
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MACROPHAGE BINDING PROTEIN
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidAVA0421
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneMBP-1
    Organism CommonVALLEY FEVER FUNGUS
    Organism ScientificCOCCIDIOIDES IMMITIS
    Organism Taxid5501

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (1x)A
Biological Unit 2 (2x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric Unit (3, 5)
No.NameCountTypeFull Name
1CL3Ligand/IonCHLORIDE ION
2EDO1Ligand/Ion1,2-ETHANEDIOL
3PO41Ligand/IonPHOSPHATE ION
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO1Ligand/Ion1,2-ETHANEDIOL
3PO41Ligand/IonPHOSPHATE ION
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO2Ligand/Ion1,2-ETHANEDIOL
3PO42Ligand/IonPHOSPHATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:35 , PRO A:223 , GLN A:224 , ALA A:226 , THR A:227BINDING SITE FOR RESIDUE EDO A 244
2AC2SOFTWARETHR A:169 , LYS A:170 , ARG A:182BINDING SITE FOR RESIDUE CL A 245
3AC3SOFTWARELYS A:7 , GLY A:215 , HOH A:349BINDING SITE FOR RESIDUE CL A 247
4AC4SOFTWAREARG A:216 , HOH A:260BINDING SITE FOR RESIDUE PO4 A 248

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3N7T)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3N7T)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3N7T)

(-) Exons   (0, 0)

(no "Exon" information available for 3N7T)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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Chain A from PDB  Type:PROTEIN  Length:241
 aligned with Q9HEU1_COCIT | Q9HEU1 from UniProtKB/TrEMBL  Length:243

    Alignment length:241
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242 
         Q9HEU1_COCIT     3 PLPRKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTAAGFEVDVASETGTFGWDEHSLTQEYLSKEDEKVLHSEHNHFMEKMNKQVFKAGDLAPHDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGIHDENGDSVIKDKTVTGFTTKGEIMIKVIDKMREDHLHTIADMAQTANAEYVPPEDPWDDFCKVDGRIVTGANPQSATNTARDTIKVYEGIVNE 243
               SCOP domains d3n7ta_ A: automated matches                                                                                                                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------DJ-1_PfpI-3n7tA01 A:64-238                                                                                                                                                     ----- Pfam domains
         Sec.struct. author ....eeeee.................hhhhhhhhhhhhhhh..eeeeee........hhhhhhhhhhhhhhhhhh...hhhhhhhhhh.ee.hhhhhhhh.eeee....hhhhhh..hhhhhhhhhhhhhh..eeeee.hhhhhhhhh............ee...hhhhhhhh.hhhhhhhh...hhhhhhhhh..ee..........eeee..eeee.hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3n7t A   3 PLPRKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTAAGFEVDVASETGTFGWDEHSLTQEYLSKEDEKVLHSEHNHFMEKMNKQVFKAGDLAPHDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGIHDENGDSVIKDKTVTGFTTKGEIMIKVIDKMREDHLHTIADMAQTANAEYVPPEDPWDDFCKVDGRIVTGANPQSATNTARDTIKVYEGIVNE 243
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242 

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3N7T)

(-) Pfam Domains  (1, 1)

Asymmetric Unit

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3N7T)

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