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(-) Description

Title :  STRUCTURE OF THE GLYCEROL DEHYDROGENASE AKR11B4 FROM GLUCONOBACTER OXYDANS
 
Authors :  N. Richter, K. Breicha, W. Hummel, K. Niefind
Date :  19 May 10  (Deposition) - 21 Jul 10  (Release) - 24 Nov 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Aldo/Keto Reductase Superfamily, Akr, Akr11B4, Tim Barrel, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Richter, K. Breicha, W. Hummel, K. Niefind
The Three-Dimensional Structure Of Akr11B4, A Glycerol Dehydrogenase From Gluconobacter Oxydans, Reveals A Tryptophan Residue As An Accelerator Of Reaction Turnover.
J. Mol. Biol. V. 404 353 2010
PubMed-ID: 20887732  |  Reference-DOI: 10.1016/J.JMB.2010.09.049
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PUTATIVE OXIDOREDUCTASE
    Chains: A
    EC Number: 1.1.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A (NDEI/SALI)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector: PLASMID
    Gene: GOX1615
    Organism Common: GLUCONOBACTER SUBOXYDANS
    Organism Scientific: GLUCONOBACTER OXYDANS
    Organism Taxid: 442

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3N2T)

(-) Sites  (0, 0)

(no "Site" information available for 3N2T)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3N2T)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Lys A:240 -Pro A:241

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3N2T)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3N2T)

(-) Exons   (0, 0)

(no "Exon" information available for 3N2T)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:327
 aligned with Q5FQJ0_GLUOX | Q5FQJ0 from UniProtKB/TrEMBL  Length:332

    Alignment length:327
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       
         Q5FQJ0_GLUOX     1 MASDTIRIPGIDTPLSRVALGTWAIGGWMWGGPDDDNGVRTIHAALDEGINLIDTAPVYGFGHSEEIVGRALAEKPNKAHVATKLGLHWVGEDEKNMKVFRDSRPARIRKEVEDSLRRLRVETIDLEQIHWPDDKTPIDESARELQKLHQDGKIRALGVSNFSPEQMDIFREVAPLATIQPPLNLFERTIEKDILPYAEKHNAVVLAYGALCRGLLTGKMNRDTTFPKDDLRSNDPKFQKPNFEKYLAAMDEFEKLAEKRGKSVMAFAVRWVLDQGPVIALWGARKPGQVSGVKDVFGWSLTDEEKKAVDDILARHVPNPIDPTFMA 327
               SCOP domains d3n2ta_ A: automated matches                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------Aldo_ket_red-3n2tA01 A:17-314                                                                                                                                                                                                                                                                             ------------- Pfam domains
         Sec.struct. author ....ee........ee.eeee............hhhhhhhhhhhhhhh...eee...hhhhhhhhhhhhhhhhhh....eeeeee.eeee.......eeee..hhhhhhhhhhhhhhhhh...eeeeee.......hhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhh...eee.......hhhhhhhhhhhhhhh.eeee...hhhhhhhh...........hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh...eeeeee..hhhhhhhhhhhh....hhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3n2t A   1 MASDTIRIPGIDTPLSRVALGTWAIGGWMWGGPDDDNGVRTIHAALDEGINLIDTAPVYGFGHSEEIVGRALAEKPNKAHVATKLGLHWVGEDEKNMKVFRDSRPARIRKEVEDSLRRLRVETIDLEQIHWPDDKTPIDESARELQKLHQDGKIRALGVSNFSPEQMDIFREVAPLATIQPPLNLFERTIEKDILPYAEKHNAVVLAYGALCRGLLTGKMNRDTTFPKDDLRSNDPKFQKPNFEKYLAAMDEFEKLAEKRGKSVMAFAVRWVLDQGPVIALWGARKPGQVSGVKDVFGWSLTDEEKKAVDDILARHVPNPIDPTFMA 327
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3N2T)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: Aldo_ket_red] (94)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q5FQJ0_GLUOX | Q5FQJ0)
molecular function
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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  Cis Peptide Bonds
    Lys A:240 - Pro A:241   [ RasMol ]  
 

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