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(-) Description

Title :  CRYSTAL STRUCTURE OF A PSPTO_0244 (PROTEIN WITH UNKNOWN FUNCTION WHICH BELONGS TO PFAM DUF861 FAMILY) FROM PSEUDOMONAS SYRINGAE PV. TOMATO STR. DC3000 AT 1.30 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  11 May 10  (Deposition) - 09 Jun 10  (Release) - 09 Jun 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.30
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Protein Of Unknown Function (Duf861), Cupin_3 (Pf05899), Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Pspto_0244 (Protein With Unknown Function Which Belongs To Pfam Duf861 Family) From Pseudomonas Syringae Pv. Tomato Str. Dc3000 At 1. 30 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN PSPTO_0244
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PSPTO0244, PSPTO_0244
    Organism Common: TBD
    Organism Scientific: PSEUDOMONAS SYRINGAE PV. TOMATO
    Organism Taxid: 223283
    Strain: DC3000

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 21)

Asymmetric Unit (3, 21)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2EDO11Ligand/Ion1,2-ETHANEDIOL
3MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO4Ligand/Ion1,2-ETHANEDIOL
3MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 11)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO7Ligand/Ion1,2-ETHANEDIOL
3MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:33 , SER A:34 , GLY A:35 , HOH A:421 , HOH A:473BINDING SITE FOR RESIDUE CL A 238
02AC2SOFTWARESER A:79 , GLY A:80 , GLN A:99 , ARG A:101 , HOH A:254BINDING SITE FOR RESIDUE EDO A 239
03AC3SOFTWAREGLN A:44 , SER A:164 , THR A:165 , HOH A:458BINDING SITE FOR RESIDUE EDO A 240
04AC4SOFTWAREPRO A:141 , TRP A:171 , HOH A:351 , HOH A:380 , HOH A:563 , HOH A:756BINDING SITE FOR RESIDUE EDO A 241
05AC5SOFTWAREPRO A:175 , THR A:227 , HOH A:416 , LEU B:132 , EDO B:239 , EDO B:240BINDING SITE FOR RESIDUE EDO A 242
06AC6SOFTWAREASP B:33 , GLY B:35BINDING SITE FOR RESIDUE CL B 238
07AC7SOFTWAREEDO A:242 , ARG B:131 , LEU B:132 , EDO B:240 , HOH B:359 , HOH B:442BINDING SITE FOR RESIDUE EDO B 239
08AC8SOFTWARETHR A:227 , EDO A:242 , ARG B:131 , EDO B:239 , EDO B:241 , HOH B:348 , HOH B:393BINDING SITE FOR RESIDUE EDO B 240
09AC9SOFTWARETHR A:227 , GLY A:228 , HOH A:347 , HOH A:720 , GLU B:193 , EDO B:240 , HOH B:417BINDING SITE FOR RESIDUE EDO B 241
10BC1SOFTWARESER B:139 , PRO B:140 , PRO B:141 , TRP B:171 , TYR B:176 , EDO B:245 , HOH B:719BINDING SITE FOR RESIDUE EDO B 242
11BC2SOFTWARETHR B:78 , SER B:79 , GLY B:80 , GLN B:99 , ARG B:101 , HOH B:255BINDING SITE FOR RESIDUE EDO B 243
12BC3SOFTWAREGLU B:20 , PHE B:21 , THR B:22 , THR B:38 , ALA B:39 , HOH B:360BINDING SITE FOR RESIDUE EDO B 244
13BC4SOFTWARESER B:155 , ARG B:167 , TRP B:171 , GLU B:187 , LYS B:232 , TYR B:234 , EDO B:242 , HOH B:337 , HOH B:421 , HOH B:624BINDING SITE FOR RESIDUE EDO B 245

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3MYX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3MYX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3MYX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3MYX)

(-) Exons   (0, 0)

(no "Exon" information available for 3MYX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:235
 aligned with Q88AY9_PSESM | Q88AY9 from UniProtKB/TrEMBL  Length:237

    Alignment length:235
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232     
         Q88AY9_PSESM     3 QPTVLLLARADLSPVGTEFTTGPIDAHDPFDSGRRTAFVDEQGIAAGIVEFGTALSVEAYPYTEMLVMHRGSVTLTSGTDSVTLSTGESAVIGRGTQVRIDAQPESLWAFCASTQASGPDKSGITALDRLALLTPSSPPDPSIMISPLPQCRSNNLFEDTASTLRIGVWDSTPYERISRPHKIHELMNLIEGRVVLSLENGSSLTVNTGDTVFVAQGAPCKWTSTGYVRKFYAVT 237
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...........ee............eeeeee....eeeeeeee..eeee.....eeeeeeee.eeeeee..eeeeee...eeee.....eeeee...eeeeeeee..........eeee......eee...hhhhh......eeeeeeee......eeeeeee..ee...ee....eeeeeee..eeeee....eeee....eeee....eeeeee...eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3myx A   3 QPTVLLLARADLSPVGTEFTTGPIDAHDPFDSGRRTAFVDEQGIAAGIVEFGTALSVEAYPYTEmLVmHRGSVTLTSGTDSVTLSTGESAVIGRGTQVRIDAQPESLWAFCASTQASGPDKSGITALDRLALLTPSSPPDPSImISPLPQCRSNNLFEDTASTLRIGVWDSTPYERISRPHKIHELmNLIEGRVVLSLENGSSLTVNTGDTVFVAQGAPCKWTSTGYVRKFYAVT 237
                                    12        22        32        42        52        62    |  |72        82        92       102       112       122       132       142   |   152       162       172       182      |192       202       212       222       232     
                                                                                           67-MSE                                                                        146-MSE                                    189-MSE                                            
                                                                                              70-MSE                                                                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:235
 aligned with Q88AY9_PSESM | Q88AY9 from UniProtKB/TrEMBL  Length:237

    Alignment length:235
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232     
         Q88AY9_PSESM     3 QPTVLLLARADLSPVGTEFTTGPIDAHDPFDSGRRTAFVDEQGIAAGIVEFGTALSVEAYPYTEMLVMHRGSVTLTSGTDSVTLSTGESAVIGRGTQVRIDAQPESLWAFCASTQASGPDKSGITALDRLALLTPSSPPDPSIMISPLPQCRSNNLFEDTASTLRIGVWDSTPYERISRPHKIHELMNLIEGRVVLSLENGSSLTVNTGDTVFVAQGAPCKWTSTGYVRKFYAVT 237
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -------------------------------------------------------------------------------------------------------------------------------------------------------------Cupin_3-3myxB01 B:160-234                                                  --- Pfam domains (1)
           Pfam domains (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------Cupin_3-3myxB02 B:160-234                                                  --- Pfam domains (2)
         Sec.struct. author ...eeeee...........ee............eeeeee....eeeeeeee..eeee.....eeeeeeee.eeeeee..eeeeee...eeee.....eeeee...eeeeeeee..........eeee......eee...hhhhh......eeeeeeee......eeeeeee.......ee....eeeeeee..eeee.....eeee....eeee....eeeee....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3myx B   3 QPTVLLLARADLSPVGTEFTTGPIDAHDPFDSGRRTAFVDEQGIAAGIVEFGTALSVEAYPYTEmLVmHRGSVTLTSGTDSVTLSTGESAVIGRGTQVRIDAQPESLWAFCASTQASGPDKSGITALDRLALLTPSSPPDPSImISPLPQCRSNNLFEDTASTLRIGVWDSTPYERISRPHKIHELmNLIEGRVVLSLENGSSLTVNTGDTVFVAQGAPCKWTSTGYVRKFYAVT 237
                                    12        22        32        42        52        62    |  |72        82        92       102       112       122       132       142   |   152       162       172       182      |192       202       212       222       232     
                                                                                           67-MSE                                                                        146-MSE                                    189-MSE                                            
                                                                                              70-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3MYX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3MYX)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: Cupin (179)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q88AY9_PSESM | Q88AY9)
molecular function
    GO:0003674    molecular_function    Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
biological process
    GO:0008150    biological_process    Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
cellular component
    GO:0005575    cellular_component    The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

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