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(-) Description

Title :  CRYSTAL STRUCTURE OF [NIFE] HYDROGENASE FROM ALLOCHROMATIUM VINOSUM IN ITS NI-A STATE
 
Authors :  H. Ogata, P. Kellers, W. Lubitz
Date :  11 May 10  (Deposition) - 04 Aug 10  (Release) - 06 Oct 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Biol. Unit 5:  A,B,C,D  (1x)
Biol. Unit 6:  E,F,G,H  (1x)
Keywords :  [Nife] Hydrogenase, Allochromatium Vinosum, Photosynthetic Purple- Sulfur Bacterium, Iron-Sulfur Cluster, Ni-A State, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Ogata, P. Kellers, W. Lubitz
The Crystal Structure Of The [Nife] Hydrogenase From The Photosynthetic Bacterium Allochromatium Vinosum: Characterization Of The Oxidized Enzyme (Ni-A State).
J. Mol. Biol. V. 402 428 2010
PubMed-ID: 20673834  |  Reference-DOI: 10.1016/J.JMB.2010.07.041

(-) Compounds

Molecule 1 - HYDROGENASE (NIFE) SMALL SUBUNIT HYDA
    Chains: A, C, E, G
    EC Number: 1.12.99.6
    Organism Common: CHROMATIUM VINOSUM
    Organism Scientific: ALLOCHROMATIUM VINOSUM
    Organism Taxid: 1049
    Strain: DSM 185
 
Molecule 2 - NICKEL-DEPENDENT HYDROGENASE LARGE SUBUNIT
    Chains: B, D, F, H
    Organism Common: CHROMATIUM VINOSUM
    Organism Scientific: ALLOCHROMATIUM VINOSUM
    Organism Taxid: 1049
    Strain: DSM 185

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB      
Biological Unit 2 (1x):   CD    
Biological Unit 3 (1x):     EF  
Biological Unit 4 (1x):       GH
Biological Unit 5 (1x): ABCD    
Biological Unit 6 (1x):     EFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 26)

Asymmetric Unit (6, 26)
No.NameCountTypeFull Name
1CL4Ligand/IonCHLORIDE ION
2F3S4Ligand/IonFE3-S4 CLUSTER
3IMD2Ligand/IonIMIDAZOLE
4MG4Ligand/IonMAGNESIUM ION
5NFV4Ligand/IonNI-FE OXIDIZED ACTIVE CENTER
6SF48Ligand/IonIRON/SULFUR CLUSTER
Biological Unit 1 (4, 5)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2F3S1Ligand/IonFE3-S4 CLUSTER
3IMD1Ligand/IonIMIDAZOLE
4MG-1Ligand/IonMAGNESIUM ION
5NFV1Ligand/IonNI-FE OXIDIZED ACTIVE CENTER
6SF42Ligand/IonIRON/SULFUR CLUSTER
Biological Unit 2 (3, 4)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2F3S1Ligand/IonFE3-S4 CLUSTER
3IMD-1Ligand/IonIMIDAZOLE
4MG-1Ligand/IonMAGNESIUM ION
5NFV1Ligand/IonNI-FE OXIDIZED ACTIVE CENTER
6SF42Ligand/IonIRON/SULFUR CLUSTER
Biological Unit 3 (3, 4)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2F3S1Ligand/IonFE3-S4 CLUSTER
3IMD-1Ligand/IonIMIDAZOLE
4MG-1Ligand/IonMAGNESIUM ION
5NFV1Ligand/IonNI-FE OXIDIZED ACTIVE CENTER
6SF42Ligand/IonIRON/SULFUR CLUSTER
Biological Unit 4 (4, 5)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2F3S1Ligand/IonFE3-S4 CLUSTER
3IMD1Ligand/IonIMIDAZOLE
4MG-1Ligand/IonMAGNESIUM ION
5NFV1Ligand/IonNI-FE OXIDIZED ACTIVE CENTER
6SF42Ligand/IonIRON/SULFUR CLUSTER
Biological Unit 5 (4, 9)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2F3S2Ligand/IonFE3-S4 CLUSTER
3IMD1Ligand/IonIMIDAZOLE
4MG-1Ligand/IonMAGNESIUM ION
5NFV2Ligand/IonNI-FE OXIDIZED ACTIVE CENTER
6SF44Ligand/IonIRON/SULFUR CLUSTER
Biological Unit 6 (4, 9)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2F3S2Ligand/IonFE3-S4 CLUSTER
3IMD1Ligand/IonIMIDAZOLE
4MG-1Ligand/IonMAGNESIUM ION
5NFV2Ligand/IonNI-FE OXIDIZED ACTIVE CENTER
6SF44Ligand/IonIRON/SULFUR CLUSTER

(-) Sites  (26, 26)

Asymmetric Unit (26, 26)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:15 , CYS A:16 , THR A:17 , GLY A:18 , CYS A:19 , ASP A:75 , GLY A:113 , THR A:114 , CYS A:115 , GLY A:148 , CYS A:149 , PRO A:150 , ARG B:1059BINDING SITE FOR RESIDUE SF4 A 2001
02AC2SOFTWAREHIS A:187 , CYS A:190 , ARG A:192 , ARG A:193 , CYS A:215 , LEU A:216 , CYS A:221BINDING SITE FOR RESIDUE SF4 A 2002
03AC3SOFTWARETHR A:226 , ASN A:228 , CYS A:230 , TRP A:235 , CYS A:249 , LEU A:250 , CYS A:252BINDING SITE FOR RESIDUE F3S A 2003
04AC4SOFTWAREVAL A:143 , ASN A:145 , GLY A:176 , HOH A:3657 , ARG G:139 , HOH G:5826BINDING SITE FOR RESIDUE IMD A 3002
05AC5SOFTWAREPRO A:153 , MET A:154 , ASN A:236 , ASP A:237 , HOH A:3328BINDING SITE FOR RESIDUE CL A 2004
06AC6SOFTWARECYS B:1061 , CYS B:1064 , VAL B:1067 , HIS B:1068 , ALA B:1485 , PRO B:1486 , ARG B:1487 , LEU B:1490 , VAL B:1508 , PRO B:1509 , SER B:1510 , CYS B:1555 , CYS B:1558BINDING SITE FOR RESIDUE NFV B 2005
07AC7SOFTWAREGLU B:1042 , ALA B:1506 , HIS B:1561 , HOH B:2007 , HOH B:2008 , HOH B:2009BINDING SITE FOR RESIDUE MG B 2006
08AC8SOFTWAREPRO C:153 , MET C:154 , ASN C:236 , ASP C:237 , HOH C:3354BINDING SITE FOR RESIDUE CL C 2004
09AC9SOFTWAREGLU C:15 , CYS C:16 , THR C:17 , GLY C:18 , CYS C:19 , ASP C:75 , GLY C:113 , THR C:114 , CYS C:115 , GLY C:148 , CYS C:149 , PRO C:150 , HOH C:5613BINDING SITE FOR RESIDUE SF4 C 2001
10BC1SOFTWAREILE C:186 , HIS C:187 , CYS C:190 , ARG C:192 , ARG C:193 , CYS C:215 , LEU C:216 , CYS C:221BINDING SITE FOR RESIDUE SF4 C 2002
11BC2SOFTWARETHR C:226 , ASN C:228 , CYS C:230 , TRP C:235 , PRO C:242 , CYS C:249 , LEU C:250 , CYS C:252 , LYS D:1211BINDING SITE FOR RESIDUE F3S C 2003
12BC3SOFTWARECYS D:1061 , CYS D:1064 , VAL D:1067 , HIS D:1068 , ALA D:1485 , PRO D:1486 , ARG D:1487 , LEU D:1490 , VAL D:1508 , PRO D:1509 , SER D:1510 , CYS D:1555 , CYS D:1558BINDING SITE FOR RESIDUE NFV D 2005
13BC4SOFTWAREGLU D:1042 , ALA D:1506 , HIS D:1561 , HOH D:2007 , HOH D:2008 , HOH D:2009BINDING SITE FOR RESIDUE MG D 2006
14BC5SOFTWAREGLU E:15 , CYS E:16 , THR E:17 , GLY E:18 , CYS E:19 , ASP E:75 , GLY E:113 , THR E:114 , CYS E:115 , GLY E:148 , CYS E:149 , PRO E:150 , HOH E:5628 , ARG F:1059 , HIS F:1214BINDING SITE FOR RESIDUE SF4 E 2001
15BC6SOFTWAREILE E:186 , HIS E:187 , CYS E:190 , ARG E:192 , ARG E:193 , CYS E:215 , LEU E:216 , CYS E:221BINDING SITE FOR RESIDUE SF4 E 2002
16BC7SOFTWARETHR E:226 , ASN E:228 , CYS E:230 , TRP E:235 , PRO E:242 , CYS E:249 , LEU E:250 , CYS E:252 , LYS F:1211BINDING SITE FOR RESIDUE F3S E 2003
17BC8SOFTWAREPRO E:153 , MET E:154 , ASN E:236 , ASP E:237BINDING SITE FOR RESIDUE CL E 2004
18BC9SOFTWARECYS F:1061 , CYS F:1064 , VAL F:1067 , HIS F:1068 , ALA F:1485 , PRO F:1486 , ARG F:1487 , VAL F:1508 , PRO F:1509 , SER F:1510 , CYS F:1555 , CYS F:1558BINDING SITE FOR RESIDUE NFV F 2005
19CC1SOFTWAREGLU F:1042 , ALA F:1506 , HIS F:1561 , HOH F:2007 , HOH F:2008 , HOH F:2009BINDING SITE FOR RESIDUE MG F 2006
20CC2SOFTWAREGLU G:15 , CYS G:16 , THR G:17 , GLY G:18 , CYS G:19 , ASP G:75 , GLY G:113 , THR G:114 , CYS G:115 , GLY G:148 , CYS G:149 , PRO G:150 , HIS H:1214BINDING SITE FOR RESIDUE SF4 G 2001
21CC3SOFTWAREHIS G:187 , CYS G:190 , ARG G:192 , ARG G:193 , CYS G:215 , LEU G:216 , CYS G:221BINDING SITE FOR RESIDUE SF4 G 2002
22CC4SOFTWAREASN G:228 , CYS G:230 , TRP G:235 , TRP G:241 , CYS G:249 , LEU G:250 , CYS G:252 , LYS H:1211BINDING SITE FOR RESIDUE F3S G 2003
23CC5SOFTWAREPRO G:153 , MET G:154 , ASN G:236 , ASP G:237 , HOH G:3053BINDING SITE FOR RESIDUE CL G 2004
24CC6SOFTWAREARG A:139 , HOH A:4142 , MET G:135 , VAL G:143 , ASN G:145 , GLY G:176 , HOH G:4119BINDING SITE FOR RESIDUE IMD G 3001
25CC7SOFTWARECYS H:1061 , CYS H:1064 , VAL H:1067 , HIS H:1068 , ALA H:1485 , PRO H:1486 , ARG H:1487 , LEU H:1490 , VAL H:1508 , PRO H:1509 , SER H:1510 , CYS H:1555 , CYS H:1558BINDING SITE FOR RESIDUE NFV H 2005
26CC8SOFTWAREGLU H:1042 , ALA H:1506 , HIS H:1561 , HOH H:2007 , HOH H:2008 , HOH H:2009BINDING SITE FOR RESIDUE MG H 2006

(-) SS Bonds  (3, 3)

Asymmetric Unit
No.Residues
1D:1064 -D:1558
2F:1064 -F:1558
3H:1064 -H:1558

(-) Cis Peptide Bonds  (24, 24)

Asymmetric Unit
No.Residues
1Ala A:28 -Pro A:29
2Arg A:125 -Pro A:126
3Cys A:149 -Pro A:150
4Asp B:1008 -Pro B:1009
5Asn B:1212 -Pro B:1213
6Pro B:1362 -Pro B:1363
7Ala C:28 -Pro C:29
8Arg C:125 -Pro C:126
9Cys C:149 -Pro C:150
10Asp D:1008 -Pro D:1009
11Asn D:1212 -Pro D:1213
12Pro D:1362 -Pro D:1363
13Ala E:28 -Pro E:29
14Arg E:125 -Pro E:126
15Cys E:149 -Pro E:150
16Asp F:1008 -Pro F:1009
17Asn F:1212 -Pro F:1213
18Pro F:1362 -Pro F:1363
19Ala G:28 -Pro G:29
20Arg G:125 -Pro G:126
21Cys G:149 -Pro G:150
22Asp H:1008 -Pro H:1009
23Asn H:1212 -Pro H:1213
24Pro H:1362 -Pro H:1363

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3MYR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3MYR)

(-) Exons   (0, 0)

(no "Exon" information available for 3MYR)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:268
 aligned with D3RV29_ALLVD | D3RV29 from UniProtKB/TrEMBL  Length:367

    Alignment length:268
                                    60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310        
        D3RV29_ALLVD     51 ARRPSVIWLSFQECTGCTESLTRAHAPTLEDLILDFISLDYHHTLQAASGEAAEAARLQAMDENRGQYLVIVDGSIPGPDANPGFSTVAGHSNYSILMETVEHAAAVIAVGTCAAFGGLPQARPNPTGAMSVMDLVRDKPVINVPGCPPIPMVITGVIAHYLVFGRLPELDGYGRPLAFYGQSIHDRCYRRPFYDKGLFAESFDDEGAKQGWCLYRLGCKGPTTYNACATMKWNDGTSWPVEAGHPCLGCSEPQFWDAGGFYEPVSVP  318
               SCOP domains d3myra_ A: automated matches                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....hhhhhhhhhh...hhhhhhhhh.eeee.......hhhhhhhhhhhhhhhh....eeeee..ee....hhhh.ee..eehhhhhhhhhh...eeeeehhhhhhhhhhhh......eehhhhhh....eeee.....hhhhhhhhhhhhhhhh..........hhhhhh........hhhhhhh........hhhhhhh..hhhhh.hhhhh.............................hhhhh.......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3myr A    3 ARRPSVIWLSFQECTGCTESLTRAHAPTLEDLILDFISLDYHHTLQAASGEAAEAARLQAMDENRGQYLVIVDGSIPGPDANPGFSTVAGHSNYSILMETVEHAAAVIAVGTCAAFGGLPQARPNPTGAMSVMDLVRDKPVINVPGCPPIPMVITGVIAHYLVFGRLPELDGYGRPLAFYGQSIHDRCYRRPFYDKGLFAESFDDEGAKQGWCLYRLGCKGPTTYNACATMKWNDGTSWPVEAGHPCLGCSEPQFWDAGGFYEPVSVP  270
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262        


Chain B from PDB  Type:PROTEIN  Length:559
 aligned with D3RV26_ALLVD | D3RV26 from UniProtKB/TrEMBL  Length:576

    Alignment length:559
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552         
        D3RV26_ALLVD      3 ERIVVDPITRIEGHLRIEAQMDGATIAQAYSSGTMVRGIETILKGRDPRDAWAFVQRICGVCTLVHGIASVRAVEDALRIELPLNAQLIRNLMIGAQYIHDHVMHFYHLHALDWVDVVSALSADPRATSELAQSISAWPKSSPGYFADTQKRIKTFVESGQLGIFANGYWGHPAYRLPPEANLMAVAHYLEALAWQRDTAKFHAIFGGKNPHPNFVVGGVPSPIDLDSDSALNAKRLAEVRNLIQSMRTFVDQVYVPDTLAIAGFYKDWGERGEGLGNFLCYGDLPTGASLDPATFLFPRGAILDRDLSTIHEVDLEATGEIQEFVNHSWYEYSVGNDRGLHPYEGQTNLEYDRRGGVAPPYKQLDVSDGYSWLKAPRWKGRSVEVGPLARVLMLYATGHDQARELVDSTLSRLDLPVDALYSTLGRTAARALESKILVDAMQGWYDGLIANVKSGDTKTFNETLWEPSSWPSRAQGVGIMEAPRGALGHWIVIEDGRIANYQAVVPSTWNAGPRDGRGQAGAYEAALQDNHQLVDVKQPIEILRTIHSFDPCIACAVH  561
               SCOP domains d3myrb_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.........eeeeeeee..eeeeeeeee....hhhhhh...hhhhhhhhhhh......hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh..hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh..hhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eee..eee.....hhh.eee..eee..................eeee................hhhhh.............................eeee.......hhhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhh..eeeeeeeeee..eeeeeeeeee..eeeeeeeehhhhhhhh........hhhhhhhhh.........hhhhhhhhhhh..hhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3myr B 1003 ERIVVDPITRIEGHLRIEAQMDGATIAQAYSSGTMVRGIETILKGRDPRDAWAFVQRICGVCTLVHGIASVRAVEDALRIELPLNAQLIRNLMIGAQYIHDHVMHFYHLHALDWVDVVSALSADPRATSELAQSISAWPKSSPGYFADTQKRIKTFVESGQLGIFANGYWGHPAYRLPPEANLMAVAHYLEALAWQRDTAKFHAIFGGKNPHPNFVVGGVPSPIDLDSDSALNAKRLAEVRNLIQSMRTFVDQVYVPDTLAIAGFYKDWGERGEGLGNFLCYGDLPTGASLDPATFLFPRGAILDRDLSTIHEVDLEATGEIQEFVNHSWYEYSVGNDRGLHPYEGQTNLEYDRRGGVAPPYKQLDVSDGYSWLKAPRWKGRSVEVGPLARVLMLYATGHDQARELVDSTLSRLDLPVDALYSTLGRTAARALESKILVDAMQGWYDGLIANVKSGDTKTFNETLWEPSSWPSRAQGVGIMEAPRGALGHWIVIEDGRIANYQAVVPSTWNAGPRDGRGQAGAYEAALQDNHQLVDVKQPIEILRTIHSFDPCIACAVH 1561
                                  1012      1022      1032      1042      1052      1062      1072      1082      1092      1102      1112      1122      1132      1142      1152      1162      1172      1182      1192      1202      1212      1222      1232      1242      1252      1262      1272      1282      1292      1302      1312      1322      1332      1342      1352      1362      1372      1382      1392      1402      1412      1422      1432      1442      1452      1462      1472      1482      1492      1502      1512      1522      1532      1542      1552         


Chain C from PDB  Type:PROTEIN  Length:269
 aligned with D3RV29_ALLVD | D3RV29 from UniProtKB/TrEMBL  Length:367

    Alignment length:269
                                    60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310         
        D3RV29_ALLVD     51 ARRPSVIWLSFQECTGCTESLTRAHAPTLEDLILDFISLDYHHTLQAASGEAAEAARLQAMDENRGQYLVIVDGSIPGPDANPGFSTVAGHSNYSILMETVEHAAAVIAVGTCAAFGGLPQARPNPTGAMSVMDLVRDKPVINVPGCPPIPMVITGVIAHYLVFGRLPELDGYGRPLAFYGQSIHDRCYRRPFYDKGLFAESFDDEGAKQGWCLYRLGCKGPTTYNACATMKWNDGTSWPVEAGHPCLGCSEPQFWDAGGFYEPVSVPL  319
               SCOP domains d3myrc_ C: automated matches                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....hhhhhhhhhh...hhhhhhhhh.eeee.......hhhhhhhhhhhhhhhh....eeeee..ee....hhhh.ee..eehhhhhhhhhh...eeeeehhhhhhhhhhhh......eehhhhhh....eeee.....hhhhhhhhhhhhhhhh..........hhhhhh.hhhhh..hhhhhhh........hhhhhh...hhhhh.hhhhh.............................hhhhh........... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3myr C    3 ARRPSVIWLSFQECTGCTESLTRAHAPTLEDLILDFISLDYHHTLQAASGEAAEAARLQAMDENRGQYLVIVDGSIPGPDANPGFSTVAGHSNYSILMETVEHAAAVIAVGTCAAFGGLPQARPNPTGAMSVMDLVRDKPVINVPGCPPIPMVITGVIAHYLVFGRLPELDGYGRPLAFYGQSIHDRCYRRPFYDKGLFAESFDDEGAKQGWCLYRLGCKGPTTYNACATMKWNDGTSWPVEAGHPCLGCSEPQFWDAGGFYEPVSVPL  271
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262         


Chain D from PDB  Type:PROTEIN  Length:561
 aligned with D3RV26_ALLVD | D3RV26 from UniProtKB/TrEMBL  Length:576

    Alignment length:561
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560 
        D3RV26_ALLVD      1 MSERIVVDPITRIEGHLRIEAQMDGATIAQAYSSGTMVRGIETILKGRDPRDAWAFVQRICGVCTLVHGIASVRAVEDALRIELPLNAQLIRNLMIGAQYIHDHVMHFYHLHALDWVDVVSALSADPRATSELAQSISAWPKSSPGYFADTQKRIKTFVESGQLGIFANGYWGHPAYRLPPEANLMAVAHYLEALAWQRDTAKFHAIFGGKNPHPNFVVGGVPSPIDLDSDSALNAKRLAEVRNLIQSMRTFVDQVYVPDTLAIAGFYKDWGERGEGLGNFLCYGDLPTGASLDPATFLFPRGAILDRDLSTIHEVDLEATGEIQEFVNHSWYEYSVGNDRGLHPYEGQTNLEYDRRGGVAPPYKQLDVSDGYSWLKAPRWKGRSVEVGPLARVLMLYATGHDQARELVDSTLSRLDLPVDALYSTLGRTAARALESKILVDAMQGWYDGLIANVKSGDTKTFNETLWEPSSWPSRAQGVGIMEAPRGALGHWIVIEDGRIANYQAVVPSTWNAGPRDGRGQAGAYEAALQDNHQLVDVKQPIEILRTIHSFDPCIACAVH  561
               SCOP domains d3myrd_ D: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee.........eeeeeeee..eeeeeeeee....hhhhhhh..hhhhhhhhhhh......hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh..hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh..hhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eee..eee.....hhh.eee..eee..................eeee.....ee.........hhhhh..ee.hhhhh...................eeee.......hhhhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhh..eeeeeeeeee..eeeeeeeeee..eeeeeeeehhhhhhhh........hhhhhhhhh.........hhhhhhhhhhh..hhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3myr D 1001 MSERIVVDPITRIEGHLRIEAQMDGATIAQAYSSGTMVRGIETILKGRDPRDAWAFVQRICGVCTLVHGIASVRAVEDALRIELPLNAQLIRNLMIGAQYIHDHVMHFYHLHALDWVDVVSALSADPRATSELAQSISAWPKSSPGYFADTQKRIKTFVESGQLGIFANGYWGHPAYRLPPEANLMAVAHYLEALAWQRDTAKFHAIFGGKNPHPNFVVGGVPSPIDLDSDSALNAKRLAEVRNLIQSMRTFVDQVYVPDTLAIAGFYKDWGERGEGLGNFLCYGDLPTGASLDPATFLFPRGAILDRDLSTIHEVDLEATGEIQEFVNHSWYEYSVGNDRGLHPYEGQTNLEYDRRGGVAPPYKQLDVSDGYSWLKAPRWKGRSVEVGPLARVLMLYATGHDQARELVDSTLSRLDLPVDALYSTLGRTAARALESKILVDAMQGWYDGLIANVKSGDTKTFNETLWEPSSWPSRAQGVGIMEAPRGALGHWIVIEDGRIANYQAVVPSTWNAGPRDGRGQAGAYEAALQDNHQLVDVKQPIEILRTIHSFDPCIACAVH 1561
                                  1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110      1120      1130      1140      1150      1160      1170      1180      1190      1200      1210      1220      1230      1240      1250      1260      1270      1280      1290      1300      1310      1320      1330      1340      1350      1360      1370      1380      1390      1400      1410      1420      1430      1440      1450      1460      1470      1480      1490      1500      1510      1520      1530      1540      1550      1560 


Chain E from PDB  Type:PROTEIN  Length:268
 aligned with D3RV29_ALLVD | D3RV29 from UniProtKB/TrEMBL  Length:367

    Alignment length:268
                                    60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310        
        D3RV29_ALLVD     51 ARRPSVIWLSFQECTGCTESLTRAHAPTLEDLILDFISLDYHHTLQAASGEAAEAARLQAMDENRGQYLVIVDGSIPGPDANPGFSTVAGHSNYSILMETVEHAAAVIAVGTCAAFGGLPQARPNPTGAMSVMDLVRDKPVINVPGCPPIPMVITGVIAHYLVFGRLPELDGYGRPLAFYGQSIHDRCYRRPFYDKGLFAESFDDEGAKQGWCLYRLGCKGPTTYNACATMKWNDGTSWPVEAGHPCLGCSEPQFWDAGGFYEPVSVP  318
               SCOP domains d3myre_ E: automated matches                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....hhhhhhhhhh...hhhhhhhhh.eeee.......hhhhhhhhhhhhhhhh....eeeee..ee....hhhh.ee..eehhhhhhhhhh...eeeeehhhhhhhhhhhh......eehhhhhh....eeee.....hhhhhhhhhhhhhhhh..........hhhhhh.hhhhh..hhhhhhh........hhhhhh...hhhhh.hhhhh.............................hhhhh.......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3myr E    3 ARRPSVIWLSFQECTGCTESLTRAHAPTLEDLILDFISLDYHHTLQAASGEAAEAARLQAMDENRGQYLVIVDGSIPGPDANPGFSTVAGHSNYSILMETVEHAAAVIAVGTCAAFGGLPQARPNPTGAMSVMDLVRDKPVINVPGCPPIPMVITGVIAHYLVFGRLPELDGYGRPLAFYGQSIHDRCYRRPFYDKGLFAESFDDEGAKQGWCLYRLGCKGPTTYNACATMKWNDGTSWPVEAGHPCLGCSEPQFWDAGGFYEPVSVP  270
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262        


Chain F from PDB  Type:PROTEIN  Length:561
 aligned with D3RV26_ALLVD | D3RV26 from UniProtKB/TrEMBL  Length:576

    Alignment length:561
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560 
        D3RV26_ALLVD      1 MSERIVVDPITRIEGHLRIEAQMDGATIAQAYSSGTMVRGIETILKGRDPRDAWAFVQRICGVCTLVHGIASVRAVEDALRIELPLNAQLIRNLMIGAQYIHDHVMHFYHLHALDWVDVVSALSADPRATSELAQSISAWPKSSPGYFADTQKRIKTFVESGQLGIFANGYWGHPAYRLPPEANLMAVAHYLEALAWQRDTAKFHAIFGGKNPHPNFVVGGVPSPIDLDSDSALNAKRLAEVRNLIQSMRTFVDQVYVPDTLAIAGFYKDWGERGEGLGNFLCYGDLPTGASLDPATFLFPRGAILDRDLSTIHEVDLEATGEIQEFVNHSWYEYSVGNDRGLHPYEGQTNLEYDRRGGVAPPYKQLDVSDGYSWLKAPRWKGRSVEVGPLARVLMLYATGHDQARELVDSTLSRLDLPVDALYSTLGRTAARALESKILVDAMQGWYDGLIANVKSGDTKTFNETLWEPSSWPSRAQGVGIMEAPRGALGHWIVIEDGRIANYQAVVPSTWNAGPRDGRGQAGAYEAALQDNHQLVDVKQPIEILRTIHSFDPCIACAVH  561
               SCOP domains d3myrf_ F: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee.........eeeeeeee..eeeeeeeee....hhhhhh...hhhhhhhhhhh......hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh..hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh..hhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eee..eee.....hhh.eee..eee..................eeee................hhhhh.............................eeee.......hhhhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhh..eeeeeeeeee..eeeeeeeeee..eeeeeeeehhhhhhhh........hhhhhhhhh.........hhhhhhhhhhh..hhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3myr F 1001 MSERIVVDPITRIEGHLRIEAQMDGATIAQAYSSGTMVRGIETILKGRDPRDAWAFVQRICGVCTLVHGIASVRAVEDALRIELPLNAQLIRNLMIGAQYIHDHVMHFYHLHALDWVDVVSALSADPRATSELAQSISAWPKSSPGYFADTQKRIKTFVESGQLGIFANGYWGHPAYRLPPEANLMAVAHYLEALAWQRDTAKFHAIFGGKNPHPNFVVGGVPSPIDLDSDSALNAKRLAEVRNLIQSMRTFVDQVYVPDTLAIAGFYKDWGERGEGLGNFLCYGDLPTGASLDPATFLFPRGAILDRDLSTIHEVDLEATGEIQEFVNHSWYEYSVGNDRGLHPYEGQTNLEYDRRGGVAPPYKQLDVSDGYSWLKAPRWKGRSVEVGPLARVLMLYATGHDQARELVDSTLSRLDLPVDALYSTLGRTAARALESKILVDAMQGWYDGLIANVKSGDTKTFNETLWEPSSWPSRAQGVGIMEAPRGALGHWIVIEDGRIANYQAVVPSTWNAGPRDGRGQAGAYEAALQDNHQLVDVKQPIEILRTIHSFDPCIACAVH 1561
                                  1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110      1120      1130      1140      1150      1160      1170      1180      1190      1200      1210      1220      1230      1240      1250      1260      1270      1280      1290      1300      1310      1320      1330      1340      1350      1360      1370      1380      1390      1400      1410      1420      1430      1440      1450      1460      1470      1480      1490      1500      1510      1520      1530      1540      1550      1560 


Chain G from PDB  Type:PROTEIN  Length:268
 aligned with D3RV29_ALLVD | D3RV29 from UniProtKB/TrEMBL  Length:367

    Alignment length:268
                                    60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310        
        D3RV29_ALLVD     51 ARRPSVIWLSFQECTGCTESLTRAHAPTLEDLILDFISLDYHHTLQAASGEAAEAARLQAMDENRGQYLVIVDGSIPGPDANPGFSTVAGHSNYSILMETVEHAAAVIAVGTCAAFGGLPQARPNPTGAMSVMDLVRDKPVINVPGCPPIPMVITGVIAHYLVFGRLPELDGYGRPLAFYGQSIHDRCYRRPFYDKGLFAESFDDEGAKQGWCLYRLGCKGPTTYNACATMKWNDGTSWPVEAGHPCLGCSEPQFWDAGGFYEPVSVP  318
               SCOP domains d3myrg_ G: automated matches                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -------------Oxidored_q6-3myrG01 G:16-163                                                                                                                        ----------------------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) -------------Oxidored_q6-3myrG02 G:16-163                                                                                                                        ----------------------------------------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) -------------Oxidored_q6-3myrG03 G:16-163                                                                                                                        ----------------------------------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) -------------Oxidored_q6-3myrG04 G:16-163                                                                                                                        ----------------------------------------------------------------------------------------------------------- Pfam domains (4)
         Sec.struct. author ....eeeeee....hhhhhhhhhh...hhhhhhhhh.eeee.......hhhhhhhhhhhhhhhh....eeeee..ee....hhhh.ee..eehhhhhhhhhh...eeeeehhhhhhhhhhhh......eehhhhhh....eeee.....hhhhhhhhhhhhhhhh..........hhhhhh........hhhhhhh........hhhhhhh..hhhhh.hhhhh.............................hhhhh.......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3myr G    3 ARRPSVIWLSFQECTGCTESLTRAHAPTLEDLILDFISLDYHHTLQAASGEAAEAARLQAMDENRGQYLVIVDGSIPGPDANPGFSTVAGHSNYSILMETVEHAAAVIAVGTCAAFGGLPQARPNPTGAMSVMDLVRDKPVINVPGCPPIPMVITGVIAHYLVFGRLPELDGYGRPLAFYGQSIHDRCYRRPFYDKGLFAESFDDEGAKQGWCLYRLGCKGPTTYNACATMKWNDGTSWPVEAGHPCLGCSEPQFWDAGGFYEPVSVP  270
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262        


Chain H from PDB  Type:PROTEIN  Length:559
 aligned with D3RV26_ALLVD | D3RV26 from UniProtKB/TrEMBL  Length:576

    Alignment length:559
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552         
        D3RV26_ALLVD      3 ERIVVDPITRIEGHLRIEAQMDGATIAQAYSSGTMVRGIETILKGRDPRDAWAFVQRICGVCTLVHGIASVRAVEDALRIELPLNAQLIRNLMIGAQYIHDHVMHFYHLHALDWVDVVSALSADPRATSELAQSISAWPKSSPGYFADTQKRIKTFVESGQLGIFANGYWGHPAYRLPPEANLMAVAHYLEALAWQRDTAKFHAIFGGKNPHPNFVVGGVPSPIDLDSDSALNAKRLAEVRNLIQSMRTFVDQVYVPDTLAIAGFYKDWGERGEGLGNFLCYGDLPTGASLDPATFLFPRGAILDRDLSTIHEVDLEATGEIQEFVNHSWYEYSVGNDRGLHPYEGQTNLEYDRRGGVAPPYKQLDVSDGYSWLKAPRWKGRSVEVGPLARVLMLYATGHDQARELVDSTLSRLDLPVDALYSTLGRTAARALESKILVDAMQGWYDGLIANVKSGDTKTFNETLWEPSSWPSRAQGVGIMEAPRGALGHWIVIEDGRIANYQAVVPSTWNAGPRDGRGQAGAYEAALQDNHQLVDVKQPIEILRTIHSFDPCIACAVH  561
               SCOP domains d3myrh_ H: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------------------------------------NiFeSe_Hases-3myrH01 H:1039-1561                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Pfam domains (1)
           Pfam domains (2) ------------------------------------NiFeSe_Hases-3myrH02 H:1039-1561                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Pfam domains (2)
           Pfam domains (3) ------------------------------------NiFeSe_Hases-3myrH03 H:1039-1561                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Pfam domains (3)
           Pfam domains (4) ------------------------------------NiFeSe_Hases-3myrH04 H:1039-1561                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Pfam domains (4)
         Sec.struct. author ..eee.........eeeeeeee..eeeeeeeee....hhhhhhh..hhhhhhhhhhh......hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh..hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh..hhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eee..eee.....hhh.eee..eee..................eeee.....ee.........hhhhh..ee.hhhhh...................eeee.......hhhhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhh..eeeeeeeeee..eeeeeeeeee..eeeeeeeehhhhhhhh........hhhhhhhhh.........hhhhhhhhhhh..hhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3myr H 1003 ERIVVDPITRIEGHLRIEAQMDGATIAQAYSSGTMVRGIETILKGRDPRDAWAFVQRICGVCTLVHGIASVRAVEDALRIELPLNAQLIRNLMIGAQYIHDHVMHFYHLHALDWVDVVSALSADPRATSELAQSISAWPKSSPGYFADTQKRIKTFVESGQLGIFANGYWGHPAYRLPPEANLMAVAHYLEALAWQRDTAKFHAIFGGKNPHPNFVVGGVPSPIDLDSDSALNAKRLAEVRNLIQSMRTFVDQVYVPDTLAIAGFYKDWGERGEGLGNFLCYGDLPTGASLDPATFLFPRGAILDRDLSTIHEVDLEATGEIQEFVNHSWYEYSVGNDRGLHPYEGQTNLEYDRRGGVAPPYKQLDVSDGYSWLKAPRWKGRSVEVGPLARVLMLYATGHDQARELVDSTLSRLDLPVDALYSTLGRTAARALESKILVDAMQGWYDGLIANVKSGDTKTFNETLWEPSSWPSRAQGVGIMEAPRGALGHWIVIEDGRIANYQAVVPSTWNAGPRDGRGQAGAYEAALQDNHQLVDVKQPIEILRTIHSFDPCIACAVH 1561
                                  1012      1022      1032      1042      1052      1062      1072      1082      1092      1102      1112      1122      1132      1142      1152      1162      1172      1182      1192      1202      1212      1222      1232      1242      1252      1262      1272      1282      1292      1302      1312      1322      1332      1342      1352      1362      1372      1382      1392      1402      1412      1422      1432      1442      1452      1462      1472      1482      1492      1502      1512      1522      1532      1542      1552
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric Unit
(-)
Class: Multi-domain proteins (alpha and beta) (2421)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3MYR)

(-) Pfam Domains  (2, 8)

Asymmetric Unit
(-)
Clan: no clan defined [family: NiFeSe_Hases] (17)
(-)
Clan: no clan defined [family: Oxidored_q6] (18)

(-) Gene Ontology  (10, 14)

Asymmetric Unit(hide GO term definitions)
Chain A,C,E,G   (D3RV29_ALLVD | D3RV29)
molecular function
    GO:0051538    3 iron, 4 sulfur cluster binding    Interacting selectively and non-covalently with a 3 iron, 4 sulfur (3Fe-4S) cluster; this cluster consists of three iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands. It is essentially a 4Fe-4S cluster with one iron missing.
    GO:0051539    4 iron, 4 sulfur cluster binding    Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
    GO:0008901    ferredoxin hydrogenase activity    Catalysis of the reaction: 2 reduced ferredoxin + 2 H+ = 2 oxidized ferredoxin + H2.
    GO:0033748    hydrogenase (acceptor) activity    Catalysis of the reaction: H2 + A = AH2.
    GO:0051536    iron-sulfur cluster binding    Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0009375    ferredoxin hydrogenase complex    An enzyme complex that catalyzes the oxidation of reduced ferredoxin. Hydrogenase contains iron-sulfur clusters, and some contain nickel; it can use molecular hydrogen for the reduction of a variety of substances.

Chain B,D,F,H   (D3RV26_ALLVD | D3RV26)
molecular function
    GO:0008901    ferredoxin hydrogenase activity    Catalysis of the reaction: 2 reduced ferredoxin + 2 H+ = 2 oxidized ferredoxin + H2.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016151    nickel cation binding    Interacting selectively and non-covalently with nickel (Ni) cations.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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  Cis Peptide Bonds
    Ala A:28 - Pro A:29   [ RasMol ]  
    Ala C:28 - Pro C:29   [ RasMol ]  
    Ala E:28 - Pro E:29   [ RasMol ]  
    Ala G:28 - Pro G:29   [ RasMol ]  
    Arg A:125 - Pro A:126   [ RasMol ]  
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  3myr
    Family and Domain Information: ProDom | SYSTERS
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    Orientation in Membranes: OPM
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    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
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  D3RV26_ALLVD | D3RV26
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  D3RV29_ALLVD | D3RV29
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    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
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  1.12.99.6
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