3MXU - JenaLib

Title :   CRYSTAL STRUCTURE OF GLYCINE CLEAVAGE SYSTEM PROTEIN H FROM BARTONELLA HENSELAE

Authors :   Seattle Structural Genomics Center For Infectious Disease (S

Date :   07 May 10 (Deposition) - 26 May 10 (Release) - 26 May 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym. Unit : A
Biol. Unit 1: A  (1x)
Biol. Unit 2: A  (3x)

Keywords :   Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Cat-Scratch Disease, Bacteremia, Lymphadenopathy, Endocarditis, Hiv Co-Infection, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. E. Edwards, A. S. Gardberg, Seattle Structural Genomics Center For Infectious Disease (Ssgcid)
Crystal Structure Of Glycine Cleavage System Protein H From Bartonella Henselae
To Be Published
PubMed: search

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 4)

Sites (4, 4)

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:10 , THR A:25 , ASP A:26 , TYR A:27 , LYS A:49 , GLU A:92 , ARG A:110 , LEU A:111 , GLU A:114 , LEU A:120 , HOH A:159 , HOH A:180	BINDING SITE FOR RESIDUE CIT A 123
2	AC2	SOFTWARE	GLN A:8 , LYS A:118 , HOH A:161	BINDING SITE FOR RESIDUE SO4 A 124
3	AC3	SOFTWARE	LYS A:49 , GLN A:107 , ARG A:110 , HOH A:157 , HOH A:162	BINDING SITE FOR RESIDUE SO4 A 125
4	AC4	SOFTWARE	ASP A:39 , LEU A:40 , ALA A:53 , HOH A:144 , HOH A:241	BINDING SITE FOR RESIDUE EDO A 126

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 2)

Asymmetric Unit (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	BIOTINYL_LIPOYL	PS50968	Biotinyl/lipoyl domain profile.	GCSH_BARHE	19-101	1	A:19-101
2	LIPOYL	PS00189	2-oxo acid dehydrogenases acyltransferase component lipoyl binding site.	GCSH_BARHE	44-73	1	A:44-73

Biological Unit 1 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	BIOTINYL_LIPOYL	PS50968	Biotinyl/lipoyl domain profile.	GCSH_BARHE	19-101	1	A:19-101
2	LIPOYL	PS00189	2-oxo acid dehydrogenases acyltransferase component lipoyl binding site.	GCSH_BARHE	44-73	1	A:44-73

Biological Unit 2 (2, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	BIOTINYL_LIPOYL	PS50968	Biotinyl/lipoyl domain profile.	GCSH_BARHE	19-101	3	A:19-101
2	LIPOYL	PS00189	2-oxo acid dehydrogenases acyltransferase component lipoyl binding site.	GCSH_BARHE	44-73	3	A:44-73

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:134
 aligned with GCSH_BARHE | Q6G2F0 from UniProtKB/Swiss-Prot  Length:122

    Alignment length:134
                                         1                                                                                                                        
                                     -   |     7        17        27        37        47        57        67        77        87        97       107       117    
           GCSH_BARHE     - -------------MSKTYFTQDHEWLSVEGQVVTVGITDYAQEQLGDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAALAESPELVNQKAETEGWLWKMTVQDETQLERLLDEAAYKELI 121
               SCOP domains d3mxua_ A: automated matches                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------GCV_H-3mxuA01 A:4-121                                                                                                  Pfam domains
         Sec.struct. author hhhhhhhhh......eeee....eeeeee..eeeeeehhhhhhhhh.eeeee......ee....eeeeeee...eeeee....eeeeee.hhhhhhhhhhhhh.......eeee...hhhhhhhhhh...ee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -------------------------------BIOTINYL_LIPOYL  PDB: A:19-101 UniProt: 19-101                                     -------------------- PROSITE (1)
                PROSITE (2) --------------------------------------------------------LIPOYL  PDB: A:44-73          ------------------------------------------------ PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mxu A -12 MGTLEAQTQGPGSMSKTYFTQDHEWLSVEGQVVTVGITDYAQEQLGDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAALAESPELVNQKAETEGWLWKMTVQDETQLERLLDEAAYKELI 121
                                    -3         7        17        27        37        47        57        67        77        87        97       107       117

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Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (1, 1)

Gene Ontology (2, 2)

Asymmetric Unit(hide GO term definitions)

Chain A (GCSH_BARHE | Q6G2F0)

biological process
	GO:0019464	glycine decarboxylation via glycine cleavage system	The chemical reactions and pathways resulting in the breakdown of glycine by oxidative cleavage to carbon dioxide, ammonia, and a methylene group, mediated by enzymes of the glycine cleavage complex.
cellular component
	GO:0005960	glycine cleavage complex	A protein complex that catalyzes the reversible oxidation of glycine. In E. coli, it has four components: dihydrolipoamide dehydrogenase, glycine dehydrogenase (decarboxylating), lipoyl-GcvH-protein and aminomethyltransferase, also known as L, P, H, and T.

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