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(-) Description

Title :  CRYSTAL STRUCTURE OF NMB1681 FROM NEISSERIA MENINGITIDIS MC58, A FINO-LIKE RNA CHAPERONE
 
Authors :  K. Tan, M. Zhou, E. Duggan, J. Abdullah, A. Joachimiak, Midwest Center Structural Genomics (Mcsg)
Date :  05 May 10  (Deposition) - 23 Jun 10  (Release) - 15 Dec 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.21
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  D (1x),E (1x),F (1x)
Biol. Unit 4:  E,F  (1x)
Keywords :  Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Chaulk, J. Lu, K. Tan, D. C. Arthur, R. A. Edwards, L. S. Frost, A. Joachimiak, J. N. Glover
N. Meningitidis 1681 Is A Member Of The Fino Family Of Rna Chaperones.
Rna Biol. V. 7 112 2010
PubMed-ID: 21045552

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN NMB1681
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: NMB1681
    Organism Scientific: NEISSERIA MENINGITIDIS
    Organism Taxid: 122586
    Strain: MC58

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB    
Biological Unit 2 (1x):   CD  
Biological Unit 3 (1x):    D (1x)E (1x)F (1x)
Biological Unit 4 (1x):     EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 15)

Asymmetric Unit (2, 15)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MSE14Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1GOL-1Ligand/IonGLYCEROL
2MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 6)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MSE5Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 3)
No.NameCountTypeFull Name
1GOL-1Ligand/IonGLYCEROL
2MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (1, 6)
No.NameCountTypeFull Name
1GOL-1Ligand/IonGLYCEROL
2MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3MW6)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3MW6)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3MW6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3MW6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3MW6)

(-) Exons   (0, 0)

(no "Exon" information available for 3MW6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:122
 aligned with Q9JY98_NEIMB | Q9JY98 from UniProtKB/TrEMBL  Length:141

    Alignment length:122
                                    12        22        32        42        52        62        72        82        92       102       112       122  
         Q9JY98_NEIMB     3 QETALGAALKSAVQTMSKKKQTEMIADHIYGKYDVFKRFKPLALGIDQDLIAALPQYDAALIARVLANHCRRPRYLKALARGGKRFDLNNRFKGEVTPEEQAIAQNHPFVQQALQQQSAQAA 124
               SCOP domains d3mw6a_ A: Hypothetical protein NMB1681                                                                                    SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh.eee.....eeee.hhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mw6 A   3 QETALGAALKSAVQTmSKKKQTEmIADHIYGKYDVFKRFKPLALGIDQDLIAALPQYDAALIARVLANHCRRPRYLKALARGGKRFDLNNRFKGEVTPEEQAIAQNHPFVQQALQQQSAQAA 124
                                    12     |  22   |    32        42        52        62        72        82        92       102       112       122  
                                          18-MSE  26-MSE                                                                                              


Chain B from PDB  Type:PROTEIN  Length:94
 aligned with Q9JY98_NEIMB | Q9JY98 from UniProtKB/TrEMBL  Length:141

    Alignment length:94
                                    29        39        49        59        69        79        89        99       109    
         Q9JY98_NEIMB    20 KKKQTEMIADHIYGKYDVFKRFKPLALGIDQDLIAALPQYDAALIARVLANHCRRPRYLKALARGGKRFDLNNRFKGEVTPEEQAIAQNHPFVQ 113
               SCOP domains d3mw6b_ B: Hypothetical protein NMB1681                                                        SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh.eee.....eeee.hhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 3mw6 B  20 KKKQTEmIADHIYGKYDVFKRFKPLALGIDQDLIAALPQYDAALIARVLANHCRRPRYLKALARGGKRFDLNNRFKGEVTPEEQAIAQNHPFVQ 113
                                  | 29        39        49        59        69        79        89        99       109    
                                 26-MSE                                                                                   


Chain C from PDB  Type:PROTEIN  Length:112
 aligned with Q9JY98_NEIMB | Q9JY98 from UniProtKB/TrEMBL  Length:141

    Alignment length:112
                                    14        24        34        44        54        64        74        84        94       104       114  
         Q9JY98_NEIMB     5 TALGAALKSAVQTMSKKKQTEMIADHIYGKYDVFKRFKPLALGIDQDLIAALPQYDAALIARVLANHCRRPRYLKALARGGKRFDLNNRFKGEVTPEEQAIAQNHPFVQQAL 116
               SCOP domains d3mw6c_ C: Hypothetical protein NMB1681                                                                          SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhheeee.....eeeeehhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 3mw6 C   5 TALGAALKSAVQTmSKKKQTEmIADHIYGKYDVFKRFKPLALGIDQDLIAALPQYDAALIARVLANHCRRPRYLKALARGGKRFDLNNRFKGEVTPEEQAIAQNHPFVQQAL 116
                                    14   |    24 |      34        44        54        64        74        84        94       104       114  
                                        18-MSE  26-MSE                                                                                      


Chain D from PDB  Type:PROTEIN  Length:118
 aligned with Q9JY98_NEIMB | Q9JY98 from UniProtKB/TrEMBL  Length:141

    Alignment length:118
                             1                                                                                                                    
                             |       9        19        29        39        49        59        69        79        89        99       109        
         Q9JY98_NEIMB     - -MTQETALGAALKSAVQTMSKKKQTEMIADHIYGKYDVFKRFKPLALGIDQDLIAALPQYDAALIARVLANHCRRPRYLKALARGGKRFDLNNRFKGEVTPEEQAIAQNHPFVQQALQ 117
               SCOP domains d3mw6d_ D: Hypothetical protein NMB1681                                                                                SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh...hhhhhh..hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh.eee.....eeee.hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 3mw6 D   0 AmTQETALGAALKSAVQTmSKKKQTEmIADHIYGKYDVFKRFKPLALGIDQDLIAALPQYDAALIARVLANHCRRPRYLKALARGGKRFDLNNRFKGEVTPEEQAIAQNHPFVQQALQ 117
                             |       9        19      | 29        39        49        59        69        79        89        99       109        
                             1-MSE           18-MSE  26-MSE                                                                                       


Chain E from PDB  Type:PROTEIN  Length:119
 aligned with Q9JY98_NEIMB | Q9JY98 from UniProtKB/TrEMBL  Length:141

    Alignment length:119
                              1                                                                                                                    
                              |      8        18        28        38        48        58        68        78        88        98       108         
         Q9JY98_NEIMB     - --MTQETALGAALKSAVQTMSKKKQTEMIADHIYGKYDVFKRFKPLALGIDQDLIAALPQYDAALIARVLANHCRRPRYLKALARGGKRFDLNNRFKGEVTPEEQAIAQNHPFVQQALQ 117
               SCOP domains d3mw6e_ E: Hypothetical protein NMB1681                                                                                 SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhh.eee.....eeee.hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 3mw6 E  -1 NAmTQETALGAALKSAVQTmSKKKQTEmIADHIYGKYDVFKRFKPLALGIDQDLIAALPQYDAALIARVLANHCRRPRYLKALARGGKRFDLNNRFKGEVTPEEQAIAQNHPFVQQALQ 117
                              |      8        18       |28        38        48        58        68        78        88        98       108         
                              1-MSE           18-MSE  26-MSE                                                                                       


Chain F from PDB  Type:PROTEIN  Length:116
 aligned with Q9JY98_NEIMB | Q9JY98 from UniProtKB/TrEMBL  Length:141

    Alignment length:116
                                    10        20        30        40        50        60        70        80        90       100       110      
         Q9JY98_NEIMB     1 MTQETALGAALKSAVQTMSKKKQTEMIADHIYGKYDVFKRFKPLALGIDQDLIAALPQYDAALIARVLANHCRRPRYLKALARGGKRFDLNNRFKGEVTPEEQAIAQNHPFVQQAL 116
               SCOP domains d3mw6f_ F: Hypothetical protein NMB1681                                                                              SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------------------ProQ-3mw6F01 F:19-116                                                                              Pfam domains (1)
           Pfam domains (2) ------------------ProQ-3mw6F02 F:19-116                                                                              Pfam domains (2)
           Pfam domains (3) ------------------ProQ-3mw6F03 F:19-116                                                                              Pfam domains (3)
           Pfam domains (4) ------------------ProQ-3mw6F04 F:19-116                                                                              Pfam domains (4)
           Pfam domains (5) ------------------ProQ-3mw6F05 F:19-116                                                                              Pfam domains (5)
           Pfam domains (6) ------------------ProQ-3mw6F06 F:19-116                                                                              Pfam domains (6)
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh.eee.....eeee.hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 3mw6 F   1 mTQETALGAALKSAVQTmSKKKQTEmIADHIYGKYDVFKRFKPLALGIDQDLIAALPQYDAALIARVLANHCRRPRYLKALARGGKRFDLNNRFKGEVTPEEQAIAQNHPFVQQAL 116
                            |       10       |20     |  30        40        50        60        70        80        90       100       110      
                            1-MSE           18-MSE  26-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0 ; only for superseded entry 2HXJ: 1,1)

(no "CATH Domain" information available for 3MW6, only for superseded entry 2HXJ replaced by 3MW6)

(-) Pfam Domains  (1, 6)

Asymmetric Unit
(-)
Clan: no clan defined [family: ProQ] (1)
(-)
Family: ProQ (1)
(-)
Neisseria meningitidis serogroup B (1)
1aProQ-3mw6F01F:19-116
1bProQ-3mw6F02F:19-116
1cProQ-3mw6F03F:19-116
1dProQ-3mw6F04F:19-116
1eProQ-3mw6F05F:19-116
1fProQ-3mw6F06F:19-116

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3MW6)

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  3mw6
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 Related Entries

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(-) Related Entries Specified in the PDB File

2hxj THIS NEW DEPOSIT IS A REPLACEMENT OF 2HXJ. RELATED ID: APC83807 RELATED DB: TARGETDB