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(-) Description

Title :  THE CRYSTAL STRUCTURE OF A CONSERVED FUNCTIONALLY UNKNOWN PROTEIN FROM VIBRIO PARAHAEMOLYTICUS RIMD 2210633
 
Authors :  K. Tan, R. Wu, J. Bearden, A. Joachimiak, Midwest Center For Structu Genomics (Mcsg)
Date :  03 May 10  (Deposition) - 12 May 10  (Release) - 12 May 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A,B  (2x)
Keywords :  Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Tan, R. Wu, J. Bearden, A. Joachimiak
The Crystal Structure Of A Conserved Functionally Unknown Protein From Vibrio Parahaemolyticus Rimd 2210633
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED CONSERVED PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG19
    Expression System Strain: PPK1037
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: VP1501
    Organism Scientific: VIBRIO PARAHAEMOLYTICUS
    Organism Taxid: 223926
    Strain: RIMD 2210633

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 16)

Asymmetric Unit (1, 16)
No.NameCountTypeFull Name
1MSE16Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 16)
No.NameCountTypeFull Name
1MSE16Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 32)
No.NameCountTypeFull Name
1MSE32Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3MUQ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3MUQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3MUQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3MUQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3MUQ)

(-) Exons   (0, 0)

(no "Exon" information available for 3MUQ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:233
 aligned with Q87PK2_VIBPA | Q87PK2 from UniProtKB/TrEMBL  Length:272

    Alignment length:233
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256   
         Q87PK2_VIBPA    27 EHVRLATTTSTYHSGLLDYLLPQFEKDTGYKVDVIAAGTGKALKMGENGDVDLVMTHAPKAEGTFVEKGYGVLPRKLMYNDFVIVGPKADPAKIKDDESVLDVFKEIANKNATFISRGDDSGTHKKEMGFWAQTKIEPNFGGYRSVGQGMGPTLNMASEMQGYTMSDRGTWLAYQNKLDLEILFQGDEKLFNPYQVILVNPERYPTINYQGAKAFSDWLVNPRGQELINGFRL 259
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeehhhhhhhhhhhhhhhhhhhhh.eeeeeeehhhhhhhhhhh....eeee.hhhhhhhhhhh..eeeeeeeeeeeeeeee............hhhhhhhhhhhh...eee....hhhhhhhhhhhhhhh.......eee...hhhhhhhhhhhh...eeeehhhhhhhhhhh..eeee..hhh.eeeeeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3muq A  27 EHVRLATTTSTYHSGLLDYLLPQFEKDTGYKVDVIAAGTGKALKmGENGDVDLVmTHAPKAEGTFVEKGYGVLPRKLmYNDFVIVGPKADPAKIKDDESVLDVFKEIANKNATFISRGDDSGTHKKEmGFWAQTKIEPNFGGYRSVGQGmGPTLNmASEmQGYTmSDRGTWLAYQNKLDLEILFQGDEKLFNPYQVILVNPERYPTINYQGAKAFSDWLVNPRGQELINGFRL 259
                                    36        46        56        66    |   76    |   86        96       106       116       126       136       146       156       166       176     | 186    |  196       206       216       226       236       246       256   
                                                                       71-MSE    81-MSE                104-MSE                                           154-MSE               176-MSE |   |    |                                                                    
                                                                                                                                                                                     182-MSE    |                                                                    
                                                                                                                                                                                         186-MSE|                                                                    
                                                                                                                                                                                              191-MSE                                                                


Chain B from PDB  Type:PROTEIN  Length:233
 aligned with Q87PK2_VIBPA | Q87PK2 from UniProtKB/TrEMBL  Length:272

    Alignment length:233
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256   
         Q87PK2_VIBPA    27 EHVRLATTTSTYHSGLLDYLLPQFEKDTGYKVDVIAAGTGKALKMGENGDVDLVMTHAPKAEGTFVEKGYGVLPRKLMYNDFVIVGPKADPAKIKDDESVLDVFKEIANKNATFISRGDDSGTHKKEMGFWAQTKIEPNFGGYRSVGQGMGPTLNMASEMQGYTMSDRGTWLAYQNKLDLEILFQGDEKLFNPYQVILVNPERYPTINYQGAKAFSDWLVNPRGQELINGFRL 259
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) PBP_like_2-3muqB01 B:27-249                                                                                                                                                                                                    ---------- Pfam domains (1)
           Pfam domains (2) PBP_like_2-3muqB02 B:27-249                                                                                                                                                                                                    ---------- Pfam domains (2)
         Sec.struct. author .eeeeeeehhhhhhhhhhhhhhhhhhhhh.eeeeeeehhhhhhhhhhh....eeee.hhhhhhhhhhh..eeeeeeeeeeeeeeee............hhhhhhhhhhhh...eee....hhhhhhhhhhhhhhh.......eee...hhhhhhhhhhhhh.eeeeehhhhhhhhhhh..eeee..hhh.eeeeeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3muq B  27 EHVRLATTTSTYHSGLLDYLLPQFEKDTGYKVDVIAAGTGKALKmGENGDVDLVmTHAPKAEGTFVEKGYGVLPRKLmYNDFVIVGPKADPAKIKDDESVLDVFKEIANKNATFISRGDDSGTHKKEmGFWAQTKIEPNFGGYRSVGQGmGPTLNmASEmQGYTmSDRGTWLAYQNKLDLEILFQGDEKLFNPYQVILVNPERYPTINYQGAKAFSDWLVNPRGQELINGFRL 259
                                    36        46        56        66    |   76    |   86        96       106       116       126       136       146       156       166       176     | 186    |  196       206       216       226       236       246       256   
                                                                       71-MSE    81-MSE                104-MSE                                           154-MSE               176-MSE |   |    |                                                                    
                                                                                                                                                                                     182-MSE    |                                                                    
                                                                                                                                                                                         186-MSE|                                                                    
                                                                                                                                                                                              191-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3MUQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3MUQ)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: PBP (391)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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