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Title :   CRYSTAL STRUCTURE OF GLUTAREDOXIN 1 FROM FRANCISELLA TULARENSIS COMPLEXED WITH CACODYLATE

Authors :   N. Maltseva, Y. Kim, K. Kwon, W. F. Anderson, A. Joachimiak

Date :   29 Apr 10 (Deposition) - 19 May 10 (Release) - 14 Dec 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.05

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Alpha-Beta Sandwich, Center For Structural Genomics Of Infectious Diseases, Csgid, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   N. Maltseva, Y. Kim, K. Kwon, W. F. Anderson, A. Joachimiak
Crystal Structure Of Glutaredoxin 1 From Francisella Tularensis Complexed With Cacodylate
To Be Published
PubMed: search

Molecule 1 - GLUTAREDOXIN 1
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG7
	Expression System Strain	:	BL21MAGIC
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	FTT_0533C, GRXA
	Organism Scientific	:	FRANCISELLA TULARENSIS SUBSP. TULARENSIS
	Organism Taxid	:	177416
	Strain	:	SCHU S4

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 8)

No.	Name	Count	Type	Full Name
1	CAC	1	Ligand/Ion	CACODYLATE ION
2	GOL	1	Ligand/Ion	GLYCEROL
3	GSH	2	Ligand/Ion	GLUTATHIONE
4	MSE	4	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (3, 4)

No.	Name	Count	Type	Full Name
1	CAC	1	Ligand/Ion	CACODYLATE ION
2	GOL	-1	Ligand/Ion	GLYCEROL
3	GSH	1	Ligand/Ion	GLUTATHIONE
4	MSE	2	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (3, 4)

No.	Name	Count	Type	Full Name
1	CAC	-1	Ligand/Ion	CACODYLATE ION
2	GOL	1	Ligand/Ion	GLYCEROL
3	GSH	1	Ligand/Ion	GLUTATHIONE
4	MSE	2	Mod. Amino Acid	SELENOMETHIONINE

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:8 , ARG A:39 , THR A:58 , VAL A:59 , GLU A:67	BINDING SITE FOR RESIDUE CAC A 91
2	AC2	SOFTWARE	TYR A:13 , PRO A:60 , GLY A:71 , PHE A:72 , THR A:73 , GLU A:74 , HOH A:100 , HOH A:109	BINDING SITE FOR RESIDUE GSH A 92
3	AC3	SOFTWARE	GLN A:48 , LYS B:2 , LYS B:4 , TYR B:6 , PHE B:63 , ILE B:64 , ASP B:65 , ASP B:66 , HOH B:98 , HOH B:129	BINDING SITE FOR RESIDUE GSH B 92
4	AC4	SOFTWARE	PRO B:60 , GLY B:71 , PHE B:72 , THR B:73 , GLU B:74 , HOH B:105 , HOH B:136	BINDING SITE FOR RESIDUE GOL B 93

Asymmetric Unit

No.	Residues
1	A:11	-	A:14
2	B:11	-	B:14

Asymmetric Unit

No.	Residues
1	Val A:59	-	Pro A:60
2	Val B:59	-	Pro B:60

(no "SAP(SNP)/Variant" information available for 3MSZ)

(no "PROSITE Motif" information available for 3MSZ)

(no "Exon" information available for 3MSZ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:86
 aligned with Q5NHD0_FRATT | Q5NHD0 from UniProtKB/TrEMBL  Length:86

    Alignment length:86
                             1                                                                                    
                             |       9        19        29        39        49        59        69        79      
          Q5NHD0_FRATT    - -MKVKIYTRNGCPYCVWAKQWFEENNIAFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFIDDEHIGGFTELKANADKILNK 85
               SCOP domains d3msza_ A: automated matches                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...hhhhhhhhhhhhhh....eeee..hhhhhhhhhhhhhh............eeee..eeeehhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------- Transcript
                  3msz A  0 AmKVKIYTRNGCPYCVWAKQWFEENNIAFDETIIDDYAQRSKFYDEmNQSGKVIFPISTVPQIFIDDEHIGGFTELKANADKILNK 85
                            |||      9        19        29        39      | 49        59        69        79      
                            |||                                          46-MSE                                   
                            0||                                                                                   
                            93-MSE                                                                                
                              2

Chain B from PDB  Type:PROTEIN  Length:87
 aligned with Q5NHD0_FRATT | Q5NHD0 from UniProtKB/TrEMBL  Length:86

    Alignment length:87
                             1                                                                                     
                             |       9        19        29        39        49        59        69        79       
          Q5NHD0_FRATT    - -MKVKIYTRNGCPYCVWAKQWFEENNIAFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFIDDEHIGGFTELKANADKILNKK 86
               SCOP domains d3mszb_ B: automated matches                                                            SCOP domains
               CATH domains --------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---Glutaredoxin-3mszB01 B:3-69                                        ----------------- Pfam domains (1)
           Pfam domains (2) ---Glutaredoxin-3mszB02 B:3-69                                        ----------------- Pfam domains (2)
         Sec.struct. author ...eeeee...hhhhhhhhhhhhhh....eeee..hhhhhhhhhhhhhhhh..........eeee..eeeehhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------- Transcript
                  3msz B  0 AmKVKIYTRNGCPYCVWAKQWFEENNIAFDETIIDDYAQRSKFYDEmNQSGKVIFPISTVPQIFIDDEHIGGFTELKANADKILNKK 86
                             |       9        19        29        39      | 49        59        69        79       
                             1-MSE                                       46-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Thioredoxin fold (994)

Superfamily: Thioredoxin-like (992)

Family: automated matches (347)

Protein domain: automated matches (347)

Francisella tularensis [TaxId: 177416] (2)

1a	d3msza_	A:
1b	d3mszb_	B:

(no "CATH Domain" information available for 3MSZ)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Thioredoxin (367)

Family: Glutaredoxin (22)

Francisella tularensis subsp. tularensis (2)

1a	Glutaredoxin-3mszB01	B:3-69
1b	Glutaredoxin-3mszB02	B:3-69

Asymmetric Unit(hide GO term definitions)

Chain A,B (Q5NHD0_FRATT | Q5NHD0)

molecular function
	GO:0009055	electron carrier activity	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
	GO:0015035	protein disulfide oxidoreductase activity	Catalysis of the reaction: a protein with reduced sulfide groups = a protein with oxidized disulfide bonds.
biological process
	GO:0045454	cell redox homeostasis	Any process that maintains the redox environment of a cell or compartment within a cell.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0005623	cell	The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.

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	Cis Peptide Bonds
		Val A:59 - Pro A:60	[ RasMol ]
		Val B:59 - Pro B:60	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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	Q5NHD0_FRATT \| Q5NHD0	:	3lgc

3lgc	SAME PROTEIN APO FORM RELATED ID: IDP01801 RELATED DB: TARGETDB

Description

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Structural Features

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Ligands, Modified Residues, Ions (4, 8)

Sites (4, 4)

SS Bonds (2, 2)

Cis Peptide Bonds (2, 2)

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