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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE NITRATE TRANSPORT PROTEIN (TVN0104) FROM THERMOPLASMA VOLCANIUM AT 1.35 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  29 Apr 10  (Deposition) - 09 Feb 11  (Release) - 13 Mar 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.35
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Putative Nitrate Transport Protein (Tvn0104) From Thermoplasma Volcanium At 1. 35 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE NITRATE TRANSPORT PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TV0103, TVG0108190
    Organism Common: ARCHAEA
    Organism Scientific: THERMOPLASMA VOLCANIUM
    Organism Taxid: 50339

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 19)

Asymmetric/Biological Unit (5, 19)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2CL5Ligand/IonCHLORIDE ION
3EDO4Ligand/Ion1,2-ETHANEDIOL
4MSE8Mod. Amino AcidSELENOMETHIONINE
5UNL1Ligand/IonUNKNOWN LIGAND

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:58 , ILE A:59 , ARG A:128 , LEU A:138 , SER A:140BINDING SITE FOR RESIDUE CL A 227
02AC2SOFTWAREARG A:201 , ARG A:208 , GLU A:222 , ILE A:223 , EDO A:236BINDING SITE FOR RESIDUE CL A 228
03AC3SOFTWAREARG A:77 , LYS A:78 , ASN A:99 , HOH A:361 , HOH A:425BINDING SITE FOR RESIDUE CL A 229
04AC4SOFTWARELYS A:199 , HOH A:415BINDING SITE FOR RESIDUE CL A 230
05AC5SOFTWARELEU A:51 , ILE A:221 , GLU A:222BINDING SITE FOR RESIDUE CL A 231
06AC6SOFTWAREPRO A:10 , MSE A:61 , GLU A:120 , HOH A:396 , HOH A:398 , HOH A:458BINDING SITE FOR RESIDUE ACT A 232
07AC7SOFTWAREGLU A:21 , PRO A:23 , ALA A:155 , GLN A:158 , HOH A:355BINDING SITE FOR RESIDUE EDO A 233
08AC8SOFTWAREGLY A:71 , ARG A:72 , GLN A:96 , HOH A:244 , HOH A:383 , HOH A:390BINDING SITE FOR RESIDUE EDO A 234
09AC9SOFTWAREALA A:95 , GLN A:96 , VAL A:97BINDING SITE FOR RESIDUE EDO A 235
10BC1SOFTWAREASP A:101 , GLY A:102 , ASP A:103 , CL A:228 , HOH A:297 , HOH A:322BINDING SITE FOR RESIDUE EDO A 236

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3MST)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:233
 aligned with Q97CJ8_THEVO | Q97CJ8 from UniProtKB/TrEMBL  Length:225

    Alignment length:233
                                    1                                                                                                                                                                                                                                
                                    |2        12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222   
         Q97CJ8_THEVO     - --------MDVGMPFAGPVSFPLLVIEEELPFRIHNICSETGKFDVVLDSITNMPKYGLKIFAGVRIDMYSILGDESSGRIYTLRKGTLADFNARILAYYDKAQVINADGDTCIKMANEGYSALVGNEISIGKSFRNRMKELGLDLPSCAMASTRRIDEVIEAYEQGIDFIKNNHERAAEIISKKSGYYSEEVMKKIIGIYGHEVTKKRAELVGSRELYSRVVPELNDIEIIG 225
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------DUF3834-3mstA01 A:1-196                                                                                                                                                                             ----------------------------- Pfam domains
         Sec.struct. author hhhhh.....eee...hhhhhhhhhhhhhh...eee.........eeeee.hhhhhh..eeeeeee...eeeee.....eeee....hhhhhhhhhhhhhhh.eeee.hhhhhhhhhhh..eeeee......eehhhhhhhh......eeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh..eee.hhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mst A  -7 HENLYFQGmDVGmPFSGPVSFPLLVIEEELPFRIHNICSETGKFDVVLDSITNmPKYGLKIFAGVRIDmYSILGDESSGRIYTLRKGTLADFNARILAYYDKAQVINADGDTCIKmANEGYSALVGNEISIGKSFRNRmKELGLDLPSCAmASTRRIDEVIEAYEQGIDFIKNNHERAAEIISKKSGYYSEEVmKKIIGIYGHEVTKKRAELVGSRELYSRVVPELNDIEIIG 225
                                    |2  |     12        22        32        42   |    52        62        72        82        92       102     | 112       122       132       142|      152       162       172       182   |   192       202       212       222   
                                    1-MSE                                       46-MSE         61-MSE                                        108-MSE                131-MSE     143-MSE                                    186-MSE                                   
                                        5-MSE
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3MST)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3MST)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: PBP (391)

(-) Gene Ontology  (0, 0)

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