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(-) Description

Title :  CRYSTAL STRUCTURE OF C-TERMINAL DOMAIN OF PF110239.
 
Authors :  A. K. Wernimont, J. D. Artz, A. Hutchinson, H. Sullivan, J. Weadge, W. Te A. Bochkarev, C. H. Arrowsmith, A. M. Edwards, C. Bountra, J. Weigelt, Y. H. Lin, A. M. Neculai, M. Amani, Structural Genomics Consortium
Date :  29 Apr 10  (Deposition) - 23 Jun 10  (Release) - 20 Jun 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  B
Biol. Unit 1:  B  (2x)
Keywords :  Cdpks, Malaria, Structural Genomics Consortium, Sgc, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. K. Wernimont, J. D. Artz, A. Hutchinson, H. Sullivan, J. Weadge, W. Tempel, A. Bochkarev, C. H. Arrowsmith, A. M. Edwards, C. Bountra, J. Weigelt, R. Hui, Y. H. Lin, A. M. Neculai, M. Amani, Structural Genomics Consortium (Sgc)
Crystal Structure Of C-Terminal Domain Of Pf110239
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CALCIUM-DEPENDENT PROTEIN KINASE, PUTATIVE
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15MLH
    Expression System Strain: BL21DE3
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: PF11_0239
    Organism Scientific: PLASMODIUM FALCIPARUM
    Organism Taxid: 5833

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : B
Biological Unit 1 (2x): B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION
2SO42Ligand/IonSULFATE ION
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2SO44Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP B:117 , ASP B:121 , TYR B:123 , ASP B:128 , HOH B:184 , HOH B:199BINDING SITE FOR RESIDUE CA B 180
2AC2SOFTWARELYS B:14 , SER B:56 , ARG B:58 , ARG B:76 , HOH B:205BINDING SITE FOR RESIDUE SO4 B 181
3AC3SOFTWAREHIS B:57 , HOH B:201 , HOH B:232 , HOH B:241BINDING SITE FOR RESIDUE SO4 B 182
4AC4SOFTWAREASP B:48 , ASN B:50 , ASN B:52 , SER B:54 , GLU B:59 , HOH B:185BINDING SITE FOR RESIDUE CA B 183

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3MSE)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3MSE)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3MSE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3MSE)

(-) Exons   (0, 0)

(no "Exon" information available for 3MSE)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain B from PDB  Type:PROTEIN  Length:168
 aligned with Q8IID5_PLAF7 | Q8IID5 from UniProtKB/TrEMBL  Length:1617

    Alignment length:179
                                  1448      1458      1468      1478      1488      1498      1508      1518      1528      1538      1548      1558      1568      1578      1588      1598      1608         
        Q8IID5_PLAF7   1439 ISPNVLNNMKSYMKHSNIRNIIINIMAHELSVINNHIKYINELFYKLDTNHNGSLSHREIYTVLASVGIKKWDINRILQALDINDRGNITYTEFMAGCYRWKNIESTFLKAAFNKIDKDEDGYISKSDIVSLVHDKVLDNNDIDNFFLSVHSIKKGIPREHIINKISFQEFKDYMLSTF 1617
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------EF_hand_3-3mseB01 B:40-65 ------------------------------------------EF_hand_4-3mseB02 B:108-141       -------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eehhhhhhhhhhh..hhhhhhhhhhhhh.....eehhhhhhhhhh.....--hhhhhhhhhhh.......hhhhhhhhh.....hhhhhhhhhhhhhh.---------....hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3mse B    1 ISPNVLNNMKSYMKHSNIRNIIINIMAHELSVINNHIKYINELFYKLDTNHNGSLSHREIYTVLASVGIKKWDINRILQALDINDRGNITYTEFMAGCYRWKNI--TFLKAAFNKIDKDEDGYISKSDIVSLVHDKVLDNNDIDNFFLSVHSI---------INKISFQEFKDYMLSTF  179
                                    10        20        30        40        50        60        70        80        90       100   |  |110       120       130       140       150  |      -  |    170         
                                                                                                                                 104  |                                           153       163                
                                                                                                                                    107
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3MSE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3MSE)

(-) Pfam Domains  (2, 2)

Asymmetric Unit
(-)
Clan: EF_hand (270)

(-) Gene Ontology  (15, 15)

Asymmetric Unit(hide GO term definitions)
Chain B   (Q8IID5_PLAF7 | Q8IID5)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0009931    calcium-dependent protein serine/threonine kinase activity    Catalysis of the reactions: ATP + a protein serine = ADP + protein serine phosphate; and ATP + a protein threonine = ADP + protein threonine phosphate. These reactions are dependent on the presence of calcium ions.
    GO:0005516    calmodulin binding    Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states.
    GO:0004683    calmodulin-dependent protein kinase activity    Catalysis of the reactions: ATP + a protein serine = ADP + protein serine phosphate; and ATP + a protein threonine = ADP + protein threonine phosphate. These reactions require the presence of calcium-bound calmodulin.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004672    protein kinase activity    Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
biological process
    GO:0035556    intracellular signal transduction    The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell.
    GO:0018105    peptidyl-serine phosphorylation    The phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0046777    protein autophosphorylation    The phosphorylation by a protein of one or more of its own amino acid residues (cis-autophosphorylation), or residues on an identical protein (trans-autophosphorylation).
    GO:0006468    protein phosphorylation    The process of introducing a phosphate group on to a protein.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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