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(-) Description

Title :  CRYSTAL STRUCTURE OF AMIDOHYDROLASE EAJ56179
 
Authors :  Y. Patskovsky, J. Bonanno, S. Ozyurt, J. M. Sauder, J. Freeman, B. Wu, D. K. Bain, L. Rodgers, S. R. Wasserman, F. M. Raushel, S. K. Burley, S. C. A York Sgx Research Center For Structural Genomics (Nysgxrc)
Date :  15 Apr 10  (Deposition) - 28 Apr 10  (Release) - 02 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H
Keywords :  Sargasso Sea, Structural Genomics, Protein Structure Initiative, Psi, New York Structural Genomix Research Consortium, Nysgxrc, Prolidase, Hydrolase, New York Sgx Research Center For Structural Genomics (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. F. Xiang, Y. Patskovsky, C. Xu, A. A. Fedorov, E. V. Fedorov, A. A. Sisco, J. M. Sauder, S. K. Burley, S. C. Almo, F. M. Raushel
Functional Identification And Structure Determination Of Tw Novel Prolidases From Cog1228 In The Amidohydrolase Superfamily .
Biochemistry V. 49 6791 2010
PubMed-ID: 20604542  |  Reference-DOI: 10.1021/BI100897U

(-) Compounds

Molecule 1 - PUTATIVE AMIDOHYDROLASE
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSGX3(BC)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: EAJ56179
    Organism Scientific: UNIDENTIFIED
    Organism Taxid: 32644
    Other Details: ENVIRONMENTAL SAMPLE FROM SARGASSO SEA

 Structural Features

(-) Chains, Units

  12345678
Asymmetric/Biological Unit : ABCDEFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 41)

Asymmetric/Biological Unit (5, 41)
No.NameCountTypeFull Name
1CO32Ligand/IonCARBONATE ION
2GOL2Ligand/IonGLYCEROL
3KCX8Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
4SO413Ligand/IonSULFATE ION
5ZN16Ligand/IonZINC ION

(-) Sites  (33, 33)

Asymmetric Unit (33, 33)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:63 , HIS A:65 , KCX A:191 , ASP A:324 , ZN A:426BINDING SITE FOR RESIDUE ZN A 425
02AC2SOFTWAREKCX A:191 , HIS A:232 , HIS A:252 , ZN A:425 , SO4 A:427BINDING SITE FOR RESIDUE ZN A 426
03AC3SOFTWAREHIS A:140 , GLY A:197 , VAL A:198 , ALA A:199 , HIS A:232 , TYR A:234 , ZN A:426 , HOH A:435 , HOH A:558BINDING SITE FOR RESIDUE SO4 A 427
04AC4SOFTWAREARG A:248 , TYR A:270 , LYS A:318BINDING SITE FOR RESIDUE SO4 A 428
05AC5SOFTWAREHIS B:63 , HIS B:65 , KCX B:191 , ASP B:324 , ZN B:426 , HOH B:546BINDING SITE FOR RESIDUE ZN B 425
06AC6SOFTWAREKCX B:191 , HIS B:232 , HIS B:252 , ZN B:425 , SO4 B:427 , HOH B:546BINDING SITE FOR RESIDUE ZN B 426
07AC7SOFTWAREHIS B:140 , GLY B:197 , VAL B:198 , ALA B:199 , HIS B:232 , TYR B:234 , ZN B:426 , HOH B:513 , HOH B:546BINDING SITE FOR RESIDUE SO4 B 427
08AC8SOFTWAREARG B:248 , GLY B:268 , TYR B:270 , LYS B:318BINDING SITE FOR RESIDUE SO4 B 428
09AC9SOFTWAREHIS C:63 , HIS C:65 , KCX C:191 , ASP C:324 , ZN C:426BINDING SITE FOR RESIDUE ZN C 425
10BC1SOFTWAREKCX C:191 , HIS C:232 , HIS C:252 , ZN C:425 , SO4 C:427 , HOH C:557BINDING SITE FOR RESIDUE ZN C 426
11BC2SOFTWAREHIS C:140 , GLY C:197 , VAL C:198 , ALA C:199 , HIS C:232 , TYR C:234 , ZN C:426 , HOH C:557BINDING SITE FOR RESIDUE SO4 C 427
12BC3SOFTWARELEU C:73 , ALA C:141 , ALA C:164 , LEU C:165 , GLY C:166 , HOH C:542 , HOH C:561BINDING SITE FOR RESIDUE GOL C 428
13BC4SOFTWAREHIS D:63 , HIS D:65 , KCX D:191 , ASP D:324 , ZN D:426BINDING SITE FOR RESIDUE ZN D 425
14BC5SOFTWAREKCX D:191 , HIS D:232 , HIS D:252 , ZN D:425BINDING SITE FOR RESIDUE ZN D 426
15BC6SOFTWAREARG D:248 , GLY D:268 , TYR D:270 , LYS D:318BINDING SITE FOR RESIDUE SO4 D 427
16BC7SOFTWAREARG D:244 , GLU D:266 , HIS D:267 , LYS F:318BINDING SITE FOR RESIDUE SO4 D 428
17BC8SOFTWARELEU D:73 , ALA D:77 , ALA D:141 , GLY D:163 , LEU D:165 , GLY D:166 , HOH D:455BINDING SITE FOR RESIDUE GOL D 429
18BC9SOFTWAREHIS E:63 , HIS E:65 , KCX E:191 , ASP E:324 , ZN E:426BINDING SITE FOR RESIDUE ZN E 425
19CC1SOFTWAREKCX E:191 , HIS E:232 , HIS E:252 , ZN E:425 , SO4 E:428BINDING SITE FOR RESIDUE ZN E 426
20CC2SOFTWAREARG E:248 , GLY E:268 , TYR E:270 , LYS E:318BINDING SITE FOR RESIDUE SO4 E 427
21CC3SOFTWAREHIS E:140 , VAL E:198 , ALA E:199 , HIS E:232 , TYR E:234 , ZN E:426 , HOH E:489BINDING SITE FOR RESIDUE SO4 E 428
22CC4SOFTWAREHIS F:63 , HIS F:65 , KCX F:191 , ASP F:324 , ZN F:426BINDING SITE FOR RESIDUE ZN F 425
23CC5SOFTWAREKCX F:191 , HIS F:232 , HIS F:252 , ZN F:425 , HOH F:494BINDING SITE FOR RESIDUE ZN F 426
24CC6SOFTWAREHIS F:140 , VAL F:198 , ALA F:199 , TYR F:234 , ASP F:324 , HOH F:494 , HOH F:501BINDING SITE FOR RESIDUE CO3 F 427
25CC7SOFTWAREHIS G:63 , HIS G:65 , KCX G:191 , ASP G:324 , ZN G:426BINDING SITE FOR RESIDUE ZN G 425
26CC8SOFTWAREKCX G:191 , HIS G:232 , HIS G:252 , ZN G:425 , HOH G:554BINDING SITE FOR RESIDUE ZN G 426
27CC9SOFTWAREARG G:248 , GLY G:268 , TYR G:270 , LYS G:318BINDING SITE FOR RESIDUE SO4 G 427
28DC1SOFTWAREHIS G:140 , VAL G:198 , ALA G:199 , HIS G:232 , TYR G:234 , ASP G:324BINDING SITE FOR RESIDUE CO3 G 428
29DC2SOFTWAREHIS H:63 , HIS H:65 , KCX H:191 , ASP H:324 , ZN H:426 , HOH H:496BINDING SITE FOR RESIDUE ZN H 425
30DC3SOFTWAREKCX H:191 , HIS H:232 , HIS H:252 , ZN H:425 , SO4 H:427 , HOH H:496BINDING SITE FOR RESIDUE ZN H 426
31DC4SOFTWAREHIS H:140 , GLY H:197 , VAL H:198 , ALA H:199 , HIS H:232 , TYR H:234 , HIS H:252 , ZN H:426 , HOH H:496 , HOH H:502BINDING SITE FOR RESIDUE SO4 H 427
32DC5SOFTWAREARG H:248 , TYR H:270 , LYS H:318BINDING SITE FOR RESIDUE SO4 H 428
33DC6SOFTWAREARG H:244 , LEU H:263 , GLU H:266 , HIS H:267BINDING SITE FOR RESIDUE SO4 H 429

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1A:159 -B:156
2C:159 -H:156
3D:156 -G:159
4E:156 -F:156

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3MKV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3MKV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3MKV)

(-) Exons   (0, 0)

(no "Exon" information available for 3MKV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:414
 aligned with B2T4I1_PARPJ | B2T4I1 from UniProtKB/TrEMBL  Length:416

    Alignment length:414
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410    
         B2T4I1_PARPJ     1 MTTFVLRNGALLDPTRADLLEGFEILIEDGFVREVSDKPINSSKAHVIDVKGKTIMPGLIDLHVHVVAIEFNLPRVATLPNVLVTLRAVPIMRAMLRRGFTTVRDAGGAGYPFKQAVESGLIEGPRLFVSGRALSQTGGHADPRARSDYMPPDAPCGCCVRVGALGRVADGVDEVRRAVREELQMGADQIKIMASGGVASPTDPVGAFGYSEDEIRAIVAEAEGRGTYVLAHAYTPAAIARAVRCGVRTIEHGNLIDEETARLVAEHGAYVVPTLVTYDALASEGEKYGLPPASIAKVADVHGAGLQSIEIMKRAGVKMGFGTDLLGEAQRLQSDEFRILADVMSPAEVIASATLVGAEVLGMQDKLGRIMPGAHADVLVVDGNPLKSVDCLLGQGEHIPLVMKDGRIFVNELE 414
               SCOP domains d3mkva1 A:1-57,A:369-414 Uncharacterized protein EAJ56179d3mkva2 A:58-368 Uncharacterized protein EAJ56179                                                                                                                                                                                                                                                                      d3mkva1 A:1-57,A:369-414                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeee........eeeeeeeee..eeeeee.........eeee....eeee.eeeeee.......hhhhhh..hhhhhhhhhhhhhhhhhhh.eeeeee....hhhhhhhhhh......eeee...eee..............................eee..hhhhhhhhhhhhhhhh...eeee.................hhhhhhhhhhhhhh....eeeee.hhhhhhhhhhh...eeee....hhhhhhhhhhhh.eee.hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh................eeee...................eeee..eeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3mkv A   1 LTTFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIKSSNAHVIDVKGKTIMPGLIDLHVHVVAIEFNLPRVATLPNVLVTLRAVPIMRAMLRRGFTTVRDAGGAGYPFKQAVESGLVEGPRLFVSGRALSQTGGHADPRARSDYMPPDSPCGCCVRVGALGRVADGVDEVRRAVREELQMGADQIkIMASGGVASPTDPVGVFGYSEDEIRAIVAEAQGRGTYVLAHAYTPAAIARAVRCGVRTIEHGNLIDDETARLVAEHGAYVVPTLVTYDALASEGEKYGLPPESIAKIADVHGAGLHSIEIMKRAGVKMGFGTDLLGEAQRLQSDEFRILAEVLSPAEVIASATIVSAEVLGMQDKLGRIVPGAHADVLVVDGNPLKSVDCLLGQGEHIPLVMKDGRLFVNELE 414
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190|      200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410    
                                                                                                                                                                                                                        191-KCX                                                                                                                                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:413
 aligned with B2T4I1_PARPJ | B2T4I1 from UniProtKB/TrEMBL  Length:416

    Alignment length:413
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411   
         B2T4I1_PARPJ     2 TTFVLRNGALLDPTRADLLEGFEILIEDGFVREVSDKPINSSKAHVIDVKGKTIMPGLIDLHVHVVAIEFNLPRVATLPNVLVTLRAVPIMRAMLRRGFTTVRDAGGAGYPFKQAVESGLIEGPRLFVSGRALSQTGGHADPRARSDYMPPDAPCGCCVRVGALGRVADGVDEVRRAVREELQMGADQIKIMASGGVASPTDPVGAFGYSEDEIRAIVAEAEGRGTYVLAHAYTPAAIARAVRCGVRTIEHGNLIDEETARLVAEHGAYVVPTLVTYDALASEGEKYGLPPASIAKVADVHGAGLQSIEIMKRAGVKMGFGTDLLGEAQRLQSDEFRILADVMSPAEVIASATLVGAEVLGMQDKLGRIMPGAHADVLVVDGNPLKSVDCLLGQGEHIPLVMKDGRIFVNELE 414
               SCOP domains d3mkvb1 B:2-57,B:369-414                                d3mkvb2 B:58-368 Uncharacterized protein EAJ56179                                                                                                                                                                                                                                                                      d3mkvb1 B:2-57,B:369-414                       SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeee..eeeeeeeeeeeee..eeeeee.........eeee....eeee.eeeeee.......hhhhhh..hhhhhhhhhhhhhhhhhhh.eeeeee....hhhhhhhhhh......eeee...eee..............................eee..hhhhhhhhhhhhhhh....eeee.................hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhh...eeee....hhhhhhhhhhh..eee.hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhh.ee......hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh................eeee......hhhhhh.......eeee..eeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mkv B   2 TTFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIKSSNAHVIDVKGKTIMPGLIDLHVHVVAIEFNLPRVATLPNVLVTLRAVPIMRAMLRRGFTTVRDAGGAGYPFKQAVESGLVEGPRLFVSGRALSQTGGHADPRARSDYMPPDSPCGCCVRVGALGRVADGVDEVRRAVREELQMGADQIkIMASGGVASPTDPVGVFGYSEDEIRAIVAEAQGRGTYVLAHAYTPAAIARAVRCGVRTIEHGNLIDDETARLVAEHGAYVVPTLVTYDALASEGEKYGLPPESIAKIADVHGAGLHSIEIMKRAGVKMGFGTDLLGEAQRLQSDEFRILAEVLSPAEVIASATIVSAEVLGMQDKLGRIVPGAHADVLVVDGNPLKSVDCLLGQGEHIPLVMKDGRLFVNELE 414
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411   
                                                                                                                                                                                                                       191-KCX                                                                                                                                                                                                                           


Chain C from PDB  Type:PROTEIN  Length:413
 aligned with B2T4I1_PARPJ | B2T4I1 from UniProtKB/TrEMBL  Length:416

    Alignment length:413
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411   
         B2T4I1_PARPJ     2 TTFVLRNGALLDPTRADLLEGFEILIEDGFVREVSDKPINSSKAHVIDVKGKTIMPGLIDLHVHVVAIEFNLPRVATLPNVLVTLRAVPIMRAMLRRGFTTVRDAGGAGYPFKQAVESGLIEGPRLFVSGRALSQTGGHADPRARSDYMPPDAPCGCCVRVGALGRVADGVDEVRRAVREELQMGADQIKIMASGGVASPTDPVGAFGYSEDEIRAIVAEAEGRGTYVLAHAYTPAAIARAVRCGVRTIEHGNLIDEETARLVAEHGAYVVPTLVTYDALASEGEKYGLPPASIAKVADVHGAGLQSIEIMKRAGVKMGFGTDLLGEAQRLQSDEFRILADVMSPAEVIASATLVGAEVLGMQDKLGRIMPGAHADVLVVDGNPLKSVDCLLGQGEHIPLVMKDGRIFVNELE 414
               SCOP domains d3mkvc1 C:2-57,C:369-414                                d3mkvc2 C:58-368 Uncharacterized protein EAJ56179                                                                                                                                                                                                                                                                      d3mkvc1 C:2-57,C:369-414                       SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..ee............eeeee..eeeeee.........eeee....eeee.eeeeee.......hhhhhh..hhhhhhhhhhhhhhhhhhh.eeeeee....hhhhhhhhhh......eee....eee..............................eee..hhhhhhhhhhhhhhh....eeee.................hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhh...eeee....hhhhhhhhhhhh.eee.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.ee......hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh................eeee......hhhhhh.......eeee..eeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mkv C   2 TTFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIKSSNAHVIDVKGKTIMPGLIDLHVHVVAIEFNLPRVATLPNVLVTLRAVPIMRAMLRRGFTTVRDAGGAGYPFKQAVESGLVEGPRLFVSGRALSQTGGHADPRARSDYMPPDSPCGCCVRVGALGRVADGVDEVRRAVREELQMGADQIkIMASGGVASPTDPVGVFGYSEDEIRAIVAEAQGRGTYVLAHAYTPAAIARAVRCGVRTIEHGNLIDDETARLVAEHGAYVVPTLVTYDALASEGEKYGLPPESIAKIADVHGAGLHSIEIMKRAGVKMGFGTDLLGEAQRLQSDEFRILAEVLSPAEVIASATIVSAEVLGMQDKLGRIVPGAHADVLVVDGNPLKSVDCLLGQGEHIPLVMKDGRLFVNELE 414
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411   
                                                                                                                                                                                                                       191-KCX                                                                                                                                                                                                                           


Chain D from PDB  Type:PROTEIN  Length:413
 aligned with B2T4I1_PARPJ | B2T4I1 from UniProtKB/TrEMBL  Length:416

    Alignment length:413
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411   
         B2T4I1_PARPJ     2 TTFVLRNGALLDPTRADLLEGFEILIEDGFVREVSDKPINSSKAHVIDVKGKTIMPGLIDLHVHVVAIEFNLPRVATLPNVLVTLRAVPIMRAMLRRGFTTVRDAGGAGYPFKQAVESGLIEGPRLFVSGRALSQTGGHADPRARSDYMPPDAPCGCCVRVGALGRVADGVDEVRRAVREELQMGADQIKIMASGGVASPTDPVGAFGYSEDEIRAIVAEAEGRGTYVLAHAYTPAAIARAVRCGVRTIEHGNLIDEETARLVAEHGAYVVPTLVTYDALASEGEKYGLPPASIAKVADVHGAGLQSIEIMKRAGVKMGFGTDLLGEAQRLQSDEFRILADVMSPAEVIASATLVGAEVLGMQDKLGRIMPGAHADVLVVDGNPLKSVDCLLGQGEHIPLVMKDGRIFVNELE 414
               SCOP domains d3mkvd1 D:2-57,D:369-414                                d3mkvd2 D:58-368 Uncharacterized protein EAJ56179                                                                                                                                                                                                                                                                      d3mkvd1 D:2-57,D:369-414                       SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee........eeeeeeee....eeeee.........eeee....eeee.eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee....hhhhhhhhhh......eeee...eee..............................eee..hhhhhhhhhhhhhhhh...eeee.................hhhhhhhhhhhhhh....eeeee.hhhhhhhhhhh...eeee....hhhhhhhhhhh..eee.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.ee......hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh................eeee......hhhhh........eeee..eeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mkv D   2 TTFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIKSSNAHVIDVKGKTIMPGLIDLHVHVVAIEFNLPRVATLPNVLVTLRAVPIMRAMLRRGFTTVRDAGGAGYPFKQAVESGLVEGPRLFVSGRALSQTGGHADPRARSDYMPPDSPCGCCVRVGALGRVADGVDEVRRAVREELQMGADQIkIMASGGVASPTDPVGVFGYSEDEIRAIVAEAQGRGTYVLAHAYTPAAIARAVRCGVRTIEHGNLIDDETARLVAEHGAYVVPTLVTYDALASEGEKYGLPPESIAKIADVHGAGLHSIEIMKRAGVKMGFGTDLLGEAQRLQSDEFRILAEVLSPAEVIASATIVSAEVLGMQDKLGRIVPGAHADVLVVDGNPLKSVDCLLGQGEHIPLVMKDGRLFVNELE 414
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411   
                                                                                                                                                                                                                       191-KCX                                                                                                                                                                                                                           


Chain E from PDB  Type:PROTEIN  Length:413
 aligned with B2T4I1_PARPJ | B2T4I1 from UniProtKB/TrEMBL  Length:416

    Alignment length:413
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411   
         B2T4I1_PARPJ     2 TTFVLRNGALLDPTRADLLEGFEILIEDGFVREVSDKPINSSKAHVIDVKGKTIMPGLIDLHVHVVAIEFNLPRVATLPNVLVTLRAVPIMRAMLRRGFTTVRDAGGAGYPFKQAVESGLIEGPRLFVSGRALSQTGGHADPRARSDYMPPDAPCGCCVRVGALGRVADGVDEVRRAVREELQMGADQIKIMASGGVASPTDPVGAFGYSEDEIRAIVAEAEGRGTYVLAHAYTPAAIARAVRCGVRTIEHGNLIDEETARLVAEHGAYVVPTLVTYDALASEGEKYGLPPASIAKVADVHGAGLQSIEIMKRAGVKMGFGTDLLGEAQRLQSDEFRILADVMSPAEVIASATLVGAEVLGMQDKLGRIMPGAHADVLVVDGNPLKSVDCLLGQGEHIPLVMKDGRIFVNELE 414
               SCOP domains d3mkve1 E:2-57,E:369-414                                d3mkve2 E:58-368 Uncharacterized protein EAJ56179                                                                                                                                                                                                                                                                      d3mkve1 E:2-57,E:369-414                       SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee........eeeeeeeee..eeeeee.........eeee....eeee.eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee....hhhhhhhhhh......eee....eee..............................eee..hhhhhhhhhhhhhhh....eeee.................hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhh...eeee....hhhhhhhhhhhh.eee..hhhhhhhhhhhhhhh.hhhhhhhhhhh..hhhhhhhhhhhhh.ee......hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh................eeee......hhhhh........eeee..eeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mkv E   2 TTFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIKSSNAHVIDVKGKTIMPGLIDLHVHVVAIEFNLPRVATLPNVLVTLRAVPIMRAMLRRGFTTVRDAGGAGYPFKQAVESGLVEGPRLFVSGRALSQTGGHADPRARSDYMPPDSPCGCCVRVGALGRVADGVDEVRRAVREELQMGADQIkIMASGGVASPTDPVGVFGYSEDEIRAIVAEAQGRGTYVLAHAYTPAAIARAVRCGVRTIEHGNLIDDETARLVAEHGAYVVPTLVTYDALASEGEKYGLPPESIAKIADVHGAGLHSIEIMKRAGVKMGFGTDLLGEAQRLQSDEFRILAEVLSPAEVIASATIVSAEVLGMQDKLGRIVPGAHADVLVVDGNPLKSVDCLLGQGEHIPLVMKDGRLFVNELE 414
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411   
                                                                                                                                                                                                                       191-KCX                                                                                                                                                                                                                           


Chain F from PDB  Type:PROTEIN  Length:413
 aligned with B2T4I1_PARPJ | B2T4I1 from UniProtKB/TrEMBL  Length:416

    Alignment length:413
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411   
         B2T4I1_PARPJ     2 TTFVLRNGALLDPTRADLLEGFEILIEDGFVREVSDKPINSSKAHVIDVKGKTIMPGLIDLHVHVVAIEFNLPRVATLPNVLVTLRAVPIMRAMLRRGFTTVRDAGGAGYPFKQAVESGLIEGPRLFVSGRALSQTGGHADPRARSDYMPPDAPCGCCVRVGALGRVADGVDEVRRAVREELQMGADQIKIMASGGVASPTDPVGAFGYSEDEIRAIVAEAEGRGTYVLAHAYTPAAIARAVRCGVRTIEHGNLIDEETARLVAEHGAYVVPTLVTYDALASEGEKYGLPPASIAKVADVHGAGLQSIEIMKRAGVKMGFGTDLLGEAQRLQSDEFRILADVMSPAEVIASATLVGAEVLGMQDKLGRIMPGAHADVLVVDGNPLKSVDCLLGQGEHIPLVMKDGRIFVNELE 414
               SCOP domains d3mkvf1 F:2-57,F:369-414                                d3mkvf2 F:58-368 Uncharacterized protein EAJ56179                                                                                                                                                                                                                                                                      d3mkvf1 F:2-57,F:369-414                       SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..ee............eeeee..eeeeee.........eeee....eeee.eeeeee.......hhhhhhh.hhhhhhhhhhhhhhhhhhh.eeeeee....hhhhhhhhhhh.....eee....eee..............................eee..hhhhhhhhhhhhhhhh...eeee.................hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhh...eeee....hhhhhhhhhhhh.eee..hhhhhhhhhhh.....hhhhhhhhhhh.hhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................eeee...................eee....eeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mkv F   2 TTFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIKSSNAHVIDVKGKTIMPGLIDLHVHVVAIEFNLPRVATLPNVLVTLRAVPIMRAMLRRGFTTVRDAGGAGYPFKQAVESGLVEGPRLFVSGRALSQTGGHADPRARSDYMPPDSPCGCCVRVGALGRVADGVDEVRRAVREELQMGADQIkIMASGGVASPTDPVGVFGYSEDEIRAIVAEAQGRGTYVLAHAYTPAAIARAVRCGVRTIEHGNLIDDETARLVAEHGAYVVPTLVTYDALASEGEKYGLPPESIAKIADVHGAGLHSIEIMKRAGVKMGFGTDLLGEAQRLQSDEFRILAEVLSPAEVIASATIVSAEVLGMQDKLGRIVPGAHADVLVVDGNPLKSVDCLLGQGEHIPLVMKDGRLFVNELE 414
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411   
                                                                                                                                                                                                                       191-KCX                                                                                                                                                                                                                           


Chain G from PDB  Type:PROTEIN  Length:413
 aligned with B2T4I1_PARPJ | B2T4I1 from UniProtKB/TrEMBL  Length:416

    Alignment length:413
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411   
         B2T4I1_PARPJ     2 TTFVLRNGALLDPTRADLLEGFEILIEDGFVREVSDKPINSSKAHVIDVKGKTIMPGLIDLHVHVVAIEFNLPRVATLPNVLVTLRAVPIMRAMLRRGFTTVRDAGGAGYPFKQAVESGLIEGPRLFVSGRALSQTGGHADPRARSDYMPPDAPCGCCVRVGALGRVADGVDEVRRAVREELQMGADQIKIMASGGVASPTDPVGAFGYSEDEIRAIVAEAEGRGTYVLAHAYTPAAIARAVRCGVRTIEHGNLIDEETARLVAEHGAYVVPTLVTYDALASEGEKYGLPPASIAKVADVHGAGLQSIEIMKRAGVKMGFGTDLLGEAQRLQSDEFRILADVMSPAEVIASATLVGAEVLGMQDKLGRIMPGAHADVLVVDGNPLKSVDCLLGQGEHIPLVMKDGRIFVNELE 414
               SCOP domains d3mkvg1 G:2-57,G:369-414                                d3mkvg2 G:58-368 Uncharacterized protein EAJ56179                                                                                                                                                                                                                                                                      d3mkvg1 G:2-57,G:369-414                       SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee........eeeeeeeee..eeeeee..........eee....eeee.eeeeee.......hhhhhh..hhhhhhhhhhhhhhhhhhh.eeeeee....hhhhhhhhhh......eee....eee..............................eee..hhhhhhhhhhhhhhh....eeee.................hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhh...eeee....hhhhhhhhhhh..eee.hhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhh.ee......hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh...............eeee......hhhhhh.......eeee..eeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mkv G   2 TTFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIKSSNAHVIDVKGKTIMPGLIDLHVHVVAIEFNLPRVATLPNVLVTLRAVPIMRAMLRRGFTTVRDAGGAGYPFKQAVESGLVEGPRLFVSGRALSQTGGHADPRARSDYMPPDSPCGCCVRVGALGRVADGVDEVRRAVREELQMGADQIkIMASGGVASPTDPVGVFGYSEDEIRAIVAEAQGRGTYVLAHAYTPAAIARAVRCGVRTIEHGNLIDDETARLVAEHGAYVVPTLVTYDALASEGEKYGLPPESIAKIADVHGAGLHSIEIMKRAGVKMGFGTDLLGEAQRLQSDEFRILAEVLSPAEVIASATIVSAEVLGMQDKLGRIVPGAHADVLVVDGNPLKSVDCLLGQGEHIPLVMKDGRLFVNELE 414
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411   
                                                                                                                                                                                                                       191-KCX                                                                                                                                                                                                                           


Chain H from PDB  Type:PROTEIN  Length:413
 aligned with B2T4I1_PARPJ | B2T4I1 from UniProtKB/TrEMBL  Length:416

    Alignment length:413
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411   
         B2T4I1_PARPJ     2 TTFVLRNGALLDPTRADLLEGFEILIEDGFVREVSDKPINSSKAHVIDVKGKTIMPGLIDLHVHVVAIEFNLPRVATLPNVLVTLRAVPIMRAMLRRGFTTVRDAGGAGYPFKQAVESGLIEGPRLFVSGRALSQTGGHADPRARSDYMPPDAPCGCCVRVGALGRVADGVDEVRRAVREELQMGADQIKIMASGGVASPTDPVGAFGYSEDEIRAIVAEAEGRGTYVLAHAYTPAAIARAVRCGVRTIEHGNLIDEETARLVAEHGAYVVPTLVTYDALASEGEKYGLPPASIAKVADVHGAGLQSIEIMKRAGVKMGFGTDLLGEAQRLQSDEFRILADVMSPAEVIASATLVGAEVLGMQDKLGRIMPGAHADVLVVDGNPLKSVDCLLGQGEHIPLVMKDGRIFVNELE 414
               SCOP domains d3mkvh1 H:2-57,H:369-414                                d3mkvh2 H:58-368 Uncharacterized protein EAJ56179                                                                                                                                                                                                                                                                      d3mkvh1 H:2-57,H:369-414                       SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..ee.............eeee..eeee...........eeee....eeee.eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee....hhhhhhhhhh......eee....eee..............................eee..hhhhhhhhhhhhhhh....eeee.................hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhh...eeee....hhhhhhhhhhhh.eee.hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh.ee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................eeee...................eeee..eeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mkv H   2 TTFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIKSSNAHVIDVKGKTIMPGLIDLHVHVVAIEFNLPRVATLPNVLVTLRAVPIMRAMLRRGFTTVRDAGGAGYPFKQAVESGLVEGPRLFVSGRALSQTGGHADPRARSDYMPPDSPCGCCVRVGALGRVADGVDEVRRAVREELQMGADQIkIMASGGVASPTDPVGVFGYSEDEIRAIVAEAQGRGTYVLAHAYTPAAIARAVRCGVRTIEHGNLIDDETARLVAEHGAYVVPTLVTYDALASEGEKYGLPPESIAKIADVHGAGLHSIEIMKRAGVKMGFGTDLLGEAQRLQSDEFRILAEVLSPAEVIASATIVSAEVLGMQDKLGRIVPGAHADVLVVDGNPLKSVDCLLGQGEHIPLVMKDGRLFVNELE 414
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411   
                                                                                                                                                                                                                       191-KCX
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 16)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0 ; only for superseded entry 2R8C: 2,16)

(no "CATH Domain" information available for 3MKV, only for superseded entry 2R8C replaced by 3MKV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3MKV)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (B2T4I1_PARPJ | B2T4I1)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016810    hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds    Catalysis of the hydrolysis of any carbon-nitrogen bond, C-N, with the exception of peptide bonds.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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 Related Entries

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