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(-) Description

Title :  CRYSTAL STRUCTURE OF THE ALPHA-GALACTOSIDASE FROM LACTOBACILLUS BREVIS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET LBR11.
 
Authors :  S. Vorobiev, Y. Chen, J. Seetharaman, R. Belote, S. Sahdev, R. Xiao, T. B J. K. Everett, G. T. Montelione, J. F. Hunt, L. Tong, Northeast Struct Genomics Consortium (Nesg)
Date :  09 Apr 10  (Deposition) - 28 Apr 10  (Release) - 28 Apr 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  A,D  (1x)
Biol. Unit 3:  B,C  (1x)
Keywords :  Nesg, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Vorobiev, Y. Chen, J. Seetharaman, R. Belote, S. Sahdev, R. Xiao, T. B. Acton, J. K. Everett, G. T. Montelione, J. F. Hunt, L. Tong
Crystal Structure Of The Alpha-Galactosidase From Lactobacillus Brevis.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ALPHA-GALACTOSIDASE
    Chains: A, B, C, D
    EC Number: 3.2.1.22
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET 21-23C
    Expression System Strain: BL21(DE3) +MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: LVIS_1758
    Organism Scientific: LACTOBACILLUS BREVIS
    Organism Taxid: 387344
    Strain: ATCC 367 / JCM 1170

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): ABCD
Biological Unit 2 (1x): A  D
Biological Unit 3 (1x):  BC 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 96)

Asymmetric Unit (1, 96)
No.NameCountTypeFull Name
1MSE96Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 96)
No.NameCountTypeFull Name
1MSE96Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 48)
No.NameCountTypeFull Name
1MSE48Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 48)
No.NameCountTypeFull Name
1MSE48Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3MI6)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3MI6)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Val A:579 -Pro A:580
2Val B:579 -Pro B:580
3Val C:579 -Pro C:580
4Val D:579 -Pro D:580

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3MI6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3MI6)

(-) Exons   (0, 0)

(no "Exon" information available for 3MI6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:742
 aligned with Q03PP7_LACBA | Q03PP7 from UniProtKB/TrEMBL  Length:737

    Alignment length:742
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         737      
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731     |   -  
         Q03PP7_LACBA     2 SIHVNEANLTFHLQTDHTSYIFQIMKNGEAGQIYYGPRIHVQPTYQNLMSQEWRDATPSLNEENPNFQPATIKAEYASLGKGDFRQPAFQVTQANGSRITELTYDHYQLLTGKQRLANLPSTFDDTDDDAQTLVVSFNDRITGLALDLNYSIFPHQDVIVKSAKFTNPSSEKLVLNRALSSQLDLPDANYDLIQFSGTWARERHLYRHPLRPGMQSISSLRMASSHQQNPFMMLARPQTTDEQGAVFGFNLVYSGNFLDAIEVDQYSTSRILTGINPDEFGWNLAPQATFQTPEAILSYTSAGMNQLSQQMASFYQQHLVNPRFAHEERPVLINNWEATYFDFNEAKLMTIVNQAKRLGIEMFVLDDGWFGHRDDDTTSLGDWFVDQRKFPDGIEHFSQAVHQQGMKFGLWFEPEMVSVDSDLYQQHPDWLIHAPKSTPTPGRHQFVLDMARPEVVDYLFKLMSQMIESANLDYIKWDMNRYATEMFSSRLTSDQQLELPHRYILGVYQLYARLTQAYPNVLFESCASGGGRFDLGMMYYAPQAWTSDDTDAAERLLIQFGTSYGYPQAMMGAHVSAVPNDQMGRITSLKTRGAVAFFGDLGYELDITKMAPTELDQVKKQVAFYKCYRQLFQFGKFYRIDSPFVEDGNVTSWQVVSDDQKQAIAARYQLLNHPNAPYTRFYFKGLRPNQRYQINDDPSTYYGDELMNAGYFVPTILADGQESKDFYTQLFVVTAI------   -
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....eeeee...eeeeeee.....eeeeeeee........hhhhh.................hhhhh................eeee.........eeeeeeeeee...................eeeeeeeee.....eeeeeeeeehhh.eeeeeeeee......eeeeeeeeeeeee.....eeeeeeee..eeeeeeeee...eeeeee.............eeee..........eeeeee.....eeeeeee.....eeeeeee......eee....eee...eeeeee..hhhhhhhhhhhhhhhhh............eeehhhhhh...hhhhhhhhhhhhhhh...eeee..........................hhhhhhhhhhhhh..eeeeee...ee....hhhhhhhhhh..............ee....hhhhhhhhhhhhhhhhhhhh..eeee..............hhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee........hhhhhhhh.eee.....hhhhhhhhhhhhh...hhh.eeeeee...........hhhhhhhhhh..eeeee......hhhhhhhhhhhhhhhhhhhhhhhhheeee..........eeeeeee.....eeeeeeee.........eee.........eeee......eehhhhhhh.eee.............eeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mi6 A   2 SIHVNEANLTFHLQTDHTSYIFQImKNGEAGQIYYGPRIHVQPTYQNLmSQEWRDATPSLNEENPNFQPATIKAEYASLGKGDFRQPAFQVTQANGSRITELTYDHYQLLTGKQRLANLPSTFDDTDDDAQTLVVSFNDRITGLALDLNYSIFPHQDVIVKSAKFTNPSSEKLVLNRALSSQLDLPDANYDLIQFSGTWARERHLYRHPLRPGmQSISSLRmASSHQQNPFmmLARPQTTDEQGAVFGFNLVYSGNFLDAIEVDQYSTSRILTGINPDEFGWNLAPQATFQTPEAILSYTSAGmNQLSQQmASFYQQHLVNPRFAHEERPVLINNWEATYFDFNEAKLmTIVNQAKRLGIEmFVLDDGWFGHRDDDTTSLGDWFVDQRKFPDGIEHFSQAVHQQGmKFGLWFEPEmVSVDSDLYQQHPDWLIHAPKSTPTPGRHQFVLDmARPEVVDYLFKLmSQmIESANLDYIKWDmNRYATEmFSSRLTSDQQLELPHRYILGVYQLYARLTQAYPNVLFESCASGGGRFDLGmmYYAPQAWTSDDTDAAERLLIQFGTSYGYPQAmmGAHVSAVPNDQmGRITSLKTRGAVAFFGDLGYELDITKmAPTELDQVKKQVAFYKCYRQLFQFGKFYRIDSPFVEDGNVTSWQVVSDDQKQAIAARYQLLNHPNAPYTRFYFKGLRPNQRYQINDDPSTYYGDELmNAGYFVPTILADGQESKDFYTQLFVVTAILEHHHH 743
                                    11        21    |   31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211   |   221 |     231 ||    241       251       261       271       281       291       301   |   311|      321       331       341       351       361 |     371       381       391       401     | 411     | 421       431       441       451       461  |  | 471       481     | 491       501       511       521       531      |541       551       561       571|      581  |    591       601       611       621       631       641       651       661       671       681       691       701      |711       721       731       741  
                                                   26-MSE                  50-MSE                                                                                                                                                              215-MSE 223-MSE   233-MSE                                                                 305-MSE  |                                   350-MSE      363-MSE                                     407-MSE   417-MSE                           451-MSE      464-MSE         480-MSE  |                                                538-MSE                          571-MSE      584-MSE                    611-MSE                                                                                          708-MSE                               
                                                                                                                                                                                                                                                                  234-MSE                                                                       312-MSE                                                                                                                                                    467-MSE             487-MSE                                             539-MSE                          572-MSE                                                                                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:736
 aligned with Q03PP7_LACBA | Q03PP7 from UniProtKB/TrEMBL  Length:737

    Alignment length:736
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731      
         Q03PP7_LACBA     2 SIHVNEANLTFHLQTDHTSYIFQIMKNGEAGQIYYGPRIHVQPTYQNLMSQEWRDATPSLNEENPNFQPATIKAEYASLGKGDFRQPAFQVTQANGSRITELTYDHYQLLTGKQRLANLPSTFDDTDDDAQTLVVSFNDRITGLALDLNYSIFPHQDVIVKSAKFTNPSSEKLVLNRALSSQLDLPDANYDLIQFSGTWARERHLYRHPLRPGMQSISSLRMASSHQQNPFMMLARPQTTDEQGAVFGFNLVYSGNFLDAIEVDQYSTSRILTGINPDEFGWNLAPQATFQTPEAILSYTSAGMNQLSQQMASFYQQHLVNPRFAHEERPVLINNWEATYFDFNEAKLMTIVNQAKRLGIEMFVLDDGWFGHRDDDTTSLGDWFVDQRKFPDGIEHFSQAVHQQGMKFGLWFEPEMVSVDSDLYQQHPDWLIHAPKSTPTPGRHQFVLDMARPEVVDYLFKLMSQMIESANLDYIKWDMNRYATEMFSSRLTSDQQLELPHRYILGVYQLYARLTQAYPNVLFESCASGGGRFDLGMMYYAPQAWTSDDTDAAERLLIQFGTSYGYPQAMMGAHVSAVPNDQMGRITSLKTRGAVAFFGDLGYELDITKMAPTELDQVKKQVAFYKCYRQLFQFGKFYRIDSPFVEDGNVTSWQVVSDDQKQAIAARYQLLNHPNAPYTRFYFKGLRPNQRYQINDDPSTYYGDELMNAGYFVPTILADGQESKDFYTQLFVVTAI 737
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....eeeee...eeeeeee.....eeeeeeee..............................hhhhh................eeee.........eeeeeeeeee...................eeeeeeeee.....eeeeeeeee....eeeeeeeee......eeeeeeeeeeeee.....eeeeeeee..eeeeeeeee...eeeeee.............eeee..........eeeeee.....eeeeeee.....eeeeeee......eee....eee...eeeeee..hhhhhhhhhhhhhhhhh............eeehhhhhh...hhhhhhhhhhhhhhhh..eeee..........................hhhhhhhhhhhh...eeeeee...ee...hhhhhhhhhhh..............ee....hhhhhhhhhhhhhhhhhhh...eeee..............hhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee........hhhhhhhh.eee.....hhhhhhhhhhhhh...hhh.eeeeee...........hhhhhhhhhhh.eeeee......hhhhhhhhhhhhhhhhhhhhhhhhheeee..........eeeeeee.....eeeeeeee.........eee.........eeee......eehhhhhhh.eee.............eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mi6 B   2 SIHVNEANLTFHLQTDHTSYIFQImKNGEAGQIYYGPRIHVQPTYQNLmSQEWRDATPSLNEENPNFQPATIKAEYASLGKGDFRQPAFQVTQANGSRITELTYDHYQLLTGKQRLANLPSTFDDTDDDAQTLVVSFNDRITGLALDLNYSIFPHQDVIVKSAKFTNPSSEKLVLNRALSSQLDLPDANYDLIQFSGTWARERHLYRHPLRPGmQSISSLRmASSHQQNPFmmLARPQTTDEQGAVFGFNLVYSGNFLDAIEVDQYSTSRILTGINPDEFGWNLAPQATFQTPEAILSYTSAGmNQLSQQmASFYQQHLVNPRFAHEERPVLINNWEATYFDFNEAKLmTIVNQAKRLGIEmFVLDDGWFGHRDDDTTSLGDWFVDQRKFPDGIEHFSQAVHQQGmKFGLWFEPEmVSVDSDLYQQHPDWLIHAPKSTPTPGRHQFVLDmARPEVVDYLFKLmSQmIESANLDYIKWDmNRYATEmFSSRLTSDQQLELPHRYILGVYQLYARLTQAYPNVLFESCASGGGRFDLGmmYYAPQAWTSDDTDAAERLLIQFGTSYGYPQAmmGAHVSAVPNDQmGRITSLKTRGAVAFFGDLGYELDITKmAPTELDQVKKQVAFYKCYRQLFQFGKFYRIDSPFVEDGNVTSWQVVSDDQKQAIAARYQLLNHPNAPYTRFYFKGLRPNQRYQINDDPSTYYGDELmNAGYFVPTILADGQESKDFYTQLFVVTAI 737
                                    11        21    |   31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211   |   221 |     231 ||    241       251       261       271       281       291       301   |   311|      321       331       341       351       361 |     371       381       391       401     | 411     | 421       431       441       451       461  |  | 471       481     | 491       501       511       521       531      |541       551       561       571|      581  |    591       601       611       621       631       641       651       661       671       681       691       701      |711       721       731      
                                                   26-MSE                  50-MSE                                                                                                                                                              215-MSE 223-MSE   233-MSE                                                                 305-MSE  |                                   350-MSE      363-MSE                                     407-MSE   417-MSE                           451-MSE      464-MSE         480-MSE  |                                                538-MSE                          571-MSE      584-MSE                    611-MSE                                                                                          708-MSE                         
                                                                                                                                                                                                                                                                  234-MSE                                                                       312-MSE                                                                                                                                                    467-MSE             487-MSE                                             539-MSE                          572-MSE                                                                                                                                                                 


Chain C from PDB  Type:PROTEIN  Length:737
 aligned with Q03PP7_LACBA | Q03PP7 from UniProtKB/TrEMBL  Length:737

    Alignment length:737
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         737 
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731     | 
         Q03PP7_LACBA     2 SIHVNEANLTFHLQTDHTSYIFQIMKNGEAGQIYYGPRIHVQPTYQNLMSQEWRDATPSLNEENPNFQPATIKAEYASLGKGDFRQPAFQVTQANGSRITELTYDHYQLLTGKQRLANLPSTFDDTDDDAQTLVVSFNDRITGLALDLNYSIFPHQDVIVKSAKFTNPSSEKLVLNRALSSQLDLPDANYDLIQFSGTWARERHLYRHPLRPGMQSISSLRMASSHQQNPFMMLARPQTTDEQGAVFGFNLVYSGNFLDAIEVDQYSTSRILTGINPDEFGWNLAPQATFQTPEAILSYTSAGMNQLSQQMASFYQQHLVNPRFAHEERPVLINNWEATYFDFNEAKLMTIVNQAKRLGIEMFVLDDGWFGHRDDDTTSLGDWFVDQRKFPDGIEHFSQAVHQQGMKFGLWFEPEMVSVDSDLYQQHPDWLIHAPKSTPTPGRHQFVLDMARPEVVDYLFKLMSQMIESANLDYIKWDMNRYATEMFSSRLTSDQQLELPHRYILGVYQLYARLTQAYPNVLFESCASGGGRFDLGMMYYAPQAWTSDDTDAAERLLIQFGTSYGYPQAMMGAHVSAVPNDQMGRITSLKTRGAVAFFGDLGYELDITKMAPTELDQVKKQVAFYKCYRQLFQFGKFYRIDSPFVEDGNVTSWQVVSDDQKQAIAARYQLLNHPNAPYTRFYFKGLRPNQRYQINDDPSTYYGDELMNAGYFVPTILADGQESKDFYTQLFVVTAI-   -
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....eeeee...eeeeeee.....eeeeeeee........hhhhh.................hhhhh................eeee.........eeeeeeeeee...................eeeeeeeee.....eeeeeeeee....eeeeeeeee......eeeeeeeeeeeee.....eeeeeeee..eeeeeeeee...eeeeee.............eeee..........eeeeee.....eeeeeee.....eeeeeee......eee....eee...eeeeee..hhhhhhhhhhhhhhhhh.hhhhhh.....eeehhhhhh...hhhhhhhhhhhhhh....eeee............................hhhhhhhhhh...eeeeee...ee...hhhhhhhhhhh..............ee....hhhhhhhhhhhhhhhhhhhh..eeee.................hhhhhhhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhh...eee.....hhhhhhhhhhhhhh......eeeee............hhhhhhhhhh..eeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee..........eeeeeee.....eeeeeeee.........eee.........eeee......eehhhhhhh.eee.............eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mi6 C   2 SIHVNEANLTFHLQTDHTSYIFQImKNGEAGQIYYGPRIHVQPTYQNLmSQEWRDATPSLNEENPNFQPATIKAEYASLGKGDFRQPAFQVTQANGSRITELTYDHYQLLTGKQRLANLPSTFDDTDDDAQTLVVSFNDRITGLALDLNYSIFPHQDVIVKSAKFTNPSSEKLVLNRALSSQLDLPDANYDLIQFSGTWARERHLYRHPLRPGmQSISSLRmASSHQQNPFmmLARPQTTDEQGAVFGFNLVYSGNFLDAIEVDQYSTSRILTGINPDEFGWNLAPQATFQTPEAILSYTSAGmNQLSQQmASFYQQHLVNPRFAHEERPVLINNWEATYFDFNEAKLmTIVNQAKRLGIEmFVLDDGWFGHRDDDTTSLGDWFVDQRKFPDGIEHFSQAVHQQGmKFGLWFEPEmVSVDSDLYQQHPDWLIHAPKSTPTPGRHQFVLDmARPEVVDYLFKLmSQmIESANLDYIKWDmNRYATEmFSSRLTSDQQLELPHRYILGVYQLYARLTQAYPNVLFESCASGGGRFDLGmmYYAPQAWTSDDTDAAERLLIQFGTSYGYPQAmmGAHVSAVPNDQmGRITSLKTRGAVAFFGDLGYELDITKmAPTELDQVKKQVAFYKCYRQLFQFGKFYRIDSPFVEDGNVTSWQVVSDDQKQAIAARYQLLNHPNAPYTRFYFKGLRPNQRYQINDDPSTYYGDELmNAGYFVPTILADGQESKDFYTQLFVVTAIL 738
                                    11        21    |   31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211   |   221 |     231 ||    241       251       261       271       281       291       301   |   311|      321       331       341       351       361 |     371       381       391       401     | 411     | 421       431       441       451       461  |  | 471       481     | 491       501       511       521       531      |541       551       561       571|      581  |    591       601       611       621       631       641       651       661       671       681       691       701      |711       721       731       
                                                   26-MSE                  50-MSE                                                                                                                                                              215-MSE 223-MSE   233-MSE                                                                 305-MSE  |                                   350-MSE      363-MSE                                     407-MSE   417-MSE                           451-MSE      464-MSE         480-MSE  |                                                538-MSE                          571-MSE      584-MSE                    611-MSE                                                                                          708-MSE                          
                                                                                                                                                                                                                                                                  234-MSE                                                                       312-MSE                                                                                                                                                    467-MSE             487-MSE                                             539-MSE                          572-MSE                                                                                                                                                                  


Chain D from PDB  Type:PROTEIN  Length:743
 aligned with Q03PP7_LACBA | Q03PP7 from UniProtKB/TrEMBL  Length:737

    Alignment length:743
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        737        
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732    |    -   
         Q03PP7_LACBA     3 IHVNEANLTFHLQTDHTSYIFQIMKNGEAGQIYYGPRIHVQPTYQNLMSQEWRDATPSLNEENPNFQPATIKAEYASLGKGDFRQPAFQVTQANGSRITELTYDHYQLLTGKQRLANLPSTFDDTDDDAQTLVVSFNDRITGLALDLNYSIFPHQDVIVKSAKFTNPSSEKLVLNRALSSQLDLPDANYDLIQFSGTWARERHLYRHPLRPGMQSISSLRMASSHQQNPFMMLARPQTTDEQGAVFGFNLVYSGNFLDAIEVDQYSTSRILTGINPDEFGWNLAPQATFQTPEAILSYTSAGMNQLSQQMASFYQQHLVNPRFAHEERPVLINNWEATYFDFNEAKLMTIVNQAKRLGIEMFVLDDGWFGHRDDDTTSLGDWFVDQRKFPDGIEHFSQAVHQQGMKFGLWFEPEMVSVDSDLYQQHPDWLIHAPKSTPTPGRHQFVLDMARPEVVDYLFKLMSQMIESANLDYIKWDMNRYATEMFSSRLTSDQQLELPHRYILGVYQLYARLTQAYPNVLFESCASGGGRFDLGMMYYAPQAWTSDDTDAAERLLIQFGTSYGYPQAMMGAHVSAVPNDQMGRITSLKTRGAVAFFGDLGYELDITKMAPTELDQVKKQVAFYKCYRQLFQFGKFYRIDSPFVEDGNVTSWQVVSDDQKQAIAARYQLLNHPNAPYTRFYFKGLRPNQRYQINDDPSTYYGDELMNAGYFVPTILADGQESKDFYTQLFVVTAI--------   -
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Melibiase-3mi6D01 D:290-690                                                                                                                                                                                                                                                                                                                                                                                      ------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Melibiase-3mi6D02 D:290-690                                                                                                                                                                                                                                                                                                                                                                                      ------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Melibiase-3mi6D03 D:290-690                                                                                                                                                                                                                                                                                                                                                                                      ------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Melibiase-3mi6D04 D:290-690                                                                                                                                                                                                                                                                                                                                                                                      ------------------------------------------------------- Pfam domains (4)
         Sec.struct. author .eee....eeeee...eeeeeee.....eeeeeeee..............................hhhhh................eeee.........eeeeeeeeee...................eeeeeeeee.....eeeeeeeeehhh.eeeeeeeee......eeeeeeeeeeeee.....eeeeee.......eeeeee...eeeeee.............eeee..........eeeeee.....eeeeeee.....eeeeeee......eee....eee...eeeeee..hhhhhhhhhhhhhhhhh............eeehhhhhh...hhhhhhhhhhhhhhh...eeee..........................hhhhhhhhhhhhh..eeeeee...ee.........hhhhh..............ee....hhhhhhhhhhhhhhhhhhhh..eeee...............hhhhhhhhhhhhhhhhhhhhhhhhhh...eeee........hhhhhh...eee.....hhhhhhhhhhhhhhhhhhh.eeeee............hhhhhhhhhh..eeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeee..........eeeeeee.....eeeeeeee.........eee.........eeee......eehhhhhhh.eee.............eeeeeeeee......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mi6 D   3 IHVNEANLTFHLQTDHTSYIFQImKNGEAGQIYYGPRIHVQPTYQNLmSQEWRDATPSLNEENPNFQPATIKAEYASLGKGDFRQPAFQVTQANGSRITELTYDHYQLLTGKQRLANLPSTFDDTDDDAQTLVVSFNDRITGLALDLNYSIFPHQDVIVKSAKFTNPSSEKLVLNRALSSQLDLPDANYDLIQFSGTWARERHLYRHPLRPGmQSISSLRmASSHQQNPFmmLARPQTTDEQGAVFGFNLVYSGNFLDAIEVDQYSTSRILTGINPDEFGWNLAPQATFQTPEAILSYTSAGmNQLSQQmASFYQQHLVNPRFAHEERPVLINNWEATYFDFNEAKLmTIVNQAKRLGIEmFVLDDGWFGHRDDDTTSLGDWFVDQRKFPDGIEHFSQAVHQQGmKFGLWFEPEmVSVDSDLYQQHPDWLIHAPKSTPTPGRHQFVLDmARPEVVDYLFKLmSQmIESANLDYIKWDmNRYATEmFSSRLTSDQQLELPHRYILGVYQLYARLTQAYPNVLFESCASGGGRFDLGmmYYAPQAWTSDDTDAAERLLIQFGTSYGYPQAmmGAHVSAVPNDQmGRITSLKTRGAVAFFGDLGYELDITKmAPTELDQVKKQVAFYKCYRQLFQFGKFYRIDSPFVEDGNVTSWQVVSDDQKQAIAARYQLLNHPNAPYTRFYFKGLRPNQRYQINDDPSTYYGDELmNAGYFVPTILADGQESKDFYTQLFVVTAILEHHHHHH 745
                                    12        22   |    32        42       |52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212  |    222|      232||     242       252       262       272       282       292       302  |    312       322       332       342       352       362|      372       382       392       402    |  412    |  422       432       442       452       462 |  |  472       482    |  492       502       512       522       532     ||542       552       562       572       582 |     592       602       612       622       632       642       652       662       672       682       692       702     | 712       722       732       742   
                                                  26-MSE                  50-MSE                                                                                                                                                              215-MSE 223-MSE   233-MSE                                                                 305-MSE  |                                   350-MSE      363-MSE                                     407-MSE   417-MSE                           451-MSE      464-MSE         480-MSE  |                                                538-MSE                          571-MSE      584-MSE                    611-MSE                                                                                          708-MSE                                 
                                                                                                                                                                                                                                                                 234-MSE                                                                       312-MSE                                                                                                                                                    467-MSE             487-MSE                                             539-MSE                          572-MSE
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(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: Glyco_hydro_tim (488)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (Q03PP7_LACBA | Q03PP7)
molecular function
    GO:0004557    alpha-galactosidase activity    Catalysis of the hydrolysis of terminal, non-reducing alpha-D-galactose residues in alpha-D-galactosides, including galactose oligosaccharides, galactomannans and galactohydrolase.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0004553    hydrolase activity, hydrolyzing O-glycosyl compounds    Catalysis of the hydrolysis of any O-glycosyl bond.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.

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  3mi6
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  3.2.1.22
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 Related Entries

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