3MD2 - JenaLib

Asymmetric Unit

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	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:142
 aligned with C3W5Z1_I09A0 | C3W5Z1 from UniProtKB/TrEMBL  Length:252

    Alignment length:154
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153    
         C3W5Z1_I09A0     4 LTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEWLKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFVQNALNGNGDPNNMDRAVKLYKKLKREITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADS 157
               SCOP domains d3md2a_ A: automated matches                                                                                                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh....hhhhhhhhhhhhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhh---------hhhhhhhhh---hhhhhhhhhhhhhhhh...hhhhhhhhhh..hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3md2 A   4 LTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEWLKTRPILSPLTKGILGFVFTLT---------RRFVQNALN---DPNNMDRAVKLYKKLKREITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADS 157
                                    13        23        33        43        53        63   |     -   |    83 |   |  93       103       113       123       133       143       153    
                                                                                          67        77      85  89

Chain A from PDB  Type:PROTEIN  Length:142
 aligned with D3TEK8_9INFA | D3TEK8 from UniProtKB/TrEMBL  Length:252

    Alignment length:154
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153    
         D3TEK8_9INFA     4 LTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEWLKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFVQNALNGNGDPNNMDRAVKLYKKLKREITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADS 157
               SCOP domains d3md2a_ A: automated matches                                                                                                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh....hhhhhhhhhhhhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhh---------hhhhhhhhh---hhhhhhhhhhhhhhhh...hhhhhhhhhh..hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3md2 A   4 LTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEWLKTRPILSPLTKGILGFVFTLT---------RRFVQNALN---DPNNMDRAVKLYKKLKREITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADS 157
                                    13        23        33        43        53        63   |     -   |    83 |   |  93       103       113       123       133       143       153    
                                                                                          67        77      85  89

Chain B from PDB  Type:PROTEIN  Length:142
 aligned with C3W5Z1_I09A0 | C3W5Z1 from UniProtKB/TrEMBL  Length:252

    Alignment length:154
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153    
         C3W5Z1_I09A0     4 LTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEWLKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFVQNALNGNGDPNNMDRAVKLYKKLKREITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADS 157
               SCOP domains d3md2b_ B: automated matches                                                                                                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh....hhhhhhhhhhhhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhh---------hhhhhhhhh---hhhhhhhhhhhhhhhh...hhhhhhhhhh..hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3md2 B   4 LTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEWLKTRPILSPLTKGILGFVFTLT---------RRFVQNALN---DPNNMDRAVKLYKKLKREITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADS 157
                                    13        23        33        43        53        63   |     -   |    83 |   |  93       103       113       123       133       143       153    
                                                                                          67        77      85  89

Chain B from PDB  Type:PROTEIN  Length:142
 aligned with D3TEK8_9INFA | D3TEK8 from UniProtKB/TrEMBL  Length:252

    Alignment length:154
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153    
         D3TEK8_9INFA     4 LTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEWLKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFVQNALNGNGDPNNMDRAVKLYKKLKREITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADS 157
               SCOP domains d3md2b_ B: automated matches                                                                                                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh....hhhhhhhhhhhhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhh---------hhhhhhhhh---hhhhhhhhhhhhhhhh...hhhhhhhhhh..hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3md2 B   4 LTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEWLKTRPILSPLTKGILGFVFTLT---------RRFVQNALN---DPNNMDRAVKLYKKLKREITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADS 157
                                    13        23        33        43        53        63   |     -   |    83 |   |  93       103       113       123       133       143       153    
                                                                                          67        77      85  89

Chain C from PDB  Type:PROTEIN  Length:142
 aligned with C3W5Z1_I09A0 | C3W5Z1 from UniProtKB/TrEMBL  Length:252

    Alignment length:154
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153    
         C3W5Z1_I09A0     4 LTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEWLKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFVQNALNGNGDPNNMDRAVKLYKKLKREITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADS 157
               SCOP domains d3md2c_ C: automated matches                                                                                                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh....hhhhhhhhhhhhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhh---------hhhhhhhhh---hhhhhhhhhhhhhhhh...hhhhhhhhhh..hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3md2 C   4 LTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEWLKTRPILSPLTKGILGFVFTLT---------RRFVQNALN---DPNNMDRAVKLYKKLKREITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADS 157
                                    13        23        33        43        53        63   |     -   |    83 |   |  93       103       113       123       133       143       153    
                                                                                          67        77      85  89

Chain C from PDB  Type:PROTEIN  Length:142
 aligned with D3TEK8_9INFA | D3TEK8 from UniProtKB/TrEMBL  Length:252

    Alignment length:154
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153    
         D3TEK8_9INFA     4 LTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEWLKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFVQNALNGNGDPNNMDRAVKLYKKLKREITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADS 157
               SCOP domains d3md2c_ C: automated matches                                                                                                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh....hhhhhhhhhhhhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhh---------hhhhhhhhh---hhhhhhhhhhhhhhhh...hhhhhhhhhh..hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3md2 C   4 LTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEWLKTRPILSPLTKGILGFVFTLT---------RRFVQNALN---DPNNMDRAVKLYKKLKREITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADS 157
                                    13        23        33        43        53        63   |     -   |    83 |   |  93       103       113       123       133       143       153    
                                                                                          67        77      85  89

Chain D from PDB  Type:PROTEIN  Length:142
 aligned with C3W5Z1_I09A0 | C3W5Z1 from UniProtKB/TrEMBL  Length:252

    Alignment length:154
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153    
         C3W5Z1_I09A0     4 LTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEWLKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFVQNALNGNGDPNNMDRAVKLYKKLKREITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADS 157
               SCOP domains d3md2d_ D: automated matches                                                                                                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) Flu_M1-3md2D01 D:4-157                                                                                                                                     Pfam domains (1)
           Pfam domains (2) Flu_M1-3md2D02 D:4-157                                                                                                                                     Pfam domains (2)
           Pfam domains (3) Flu_M1-3md2D03 D:4-157                                                                                                                                     Pfam domains (3)
           Pfam domains (4) Flu_M1-3md2D04 D:4-157                                                                                                                                     Pfam domains (4)
         Sec.struct. author hhhhhhhhhh....hhhhhhhhhhhhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhh---------hhhhhhhhh---hhhhhhhhhhhhhhhh...hhhhhhhhhh..hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3md2 D   4 LTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEWLKTRPILSPLTKGILGFVFTLT---------RRFVQNALN---DPNNMDRAVKLYKKLKREITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADS 157
                                    13        23        33        43        53        63   |     -   |    83 |   |  93       103       113       123       133       143       153    
                                                                                          67        77      85  89

Chain D from PDB  Type:PROTEIN  Length:142
 aligned with D3TEK8_9INFA | D3TEK8 from UniProtKB/TrEMBL  Length:252

    Alignment length:154
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153    
         D3TEK8_9INFA     4 LTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEWLKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFVQNALNGNGDPNNMDRAVKLYKKLKREITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADS 157
               SCOP domains d3md2d_ D: automated matches                                                                                                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) Flu_M1-3md2D01 D:4-157                                                                                                                                     Pfam domains (1)
           Pfam domains (2) Flu_M1-3md2D02 D:4-157                                                                                                                                     Pfam domains (2)
           Pfam domains (3) Flu_M1-3md2D03 D:4-157                                                                                                                                     Pfam domains (3)
           Pfam domains (4) Flu_M1-3md2D04 D:4-157                                                                                                                                     Pfam domains (4)
         Sec.struct. author hhhhhhhhhh....hhhhhhhhhhhhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhh---------hhhhhhhhh---hhhhhhhhhhhhhhhh...hhhhhhhhhh..hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3md2 D   4 LTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEWLKTRPILSPLTKGILGFVFTLT---------RRFVQNALN---DPNNMDRAVKLYKKLKREITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADS 157
                                    13        23        33        43        53        63   |     -   |    83 |   |  93       103       113       123       133       143       153    
                                                                                          67        77      85  89

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (C3W5Z1_I09A0 | C3W5Z1)

molecular function
	GO:0003723	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
	GO:0039660	structural constituent of virion	The action of a molecule that contributes to the structural integrity of a virion.
	GO:0005198	structural molecule activity	The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
biological process
	GO:0039573	suppression by virus of host complement activation	Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of complement activation. The activation of complement involves the sequential proteolysis of proteins to generate enzymes with catalytic activities. The biological functions of the complement include opsonization, inflammation, lysis of immune complexes, or enhancement of the humoral immune response. For example, the virus complement control protein (VCP) of vaccinia virus, and the complement control protein of herpesvirus inhibit C3 convertase.
	GO:0016032	viral process	A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
	GO:0042025	host cell nucleus	A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0019012	virion	The complete fully infectious extracellular virus particle.
	GO:0055036	virion membrane	The lipid bilayer surrounding a virion.

Chain A,B,C,D (D3TEK8_9INFA | D3TEK8)

molecular function
	GO:0003723	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
	GO:0039660	structural constituent of virion	The action of a molecule that contributes to the structural integrity of a virion.
	GO:0005198	structural molecule activity	The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
biological process
	GO:0039573	suppression by virus of host complement activation	Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of complement activation. The activation of complement involves the sequential proteolysis of proteins to generate enzymes with catalytic activities. The biological functions of the complement include opsonization, inflammation, lysis of immune complexes, or enhancement of the humoral immune response. For example, the virus complement control protein (VCP) of vaccinia virus, and the complement control protein of herpesvirus inhibit C3 convertase.
	GO:0016032	viral process	A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
	GO:0042025	host cell nucleus	A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0019012	virion	The complete fully infectious extracellular virus particle.
	GO:0055036	virion membrane	The lipid bilayer surrounding a virion.

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 4)

CATH Domains (0, 0)

Pfam Domains (1, 4)

Gene Ontology (9, 18)

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Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File