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(-) Description

Title :  CRYSTAL STRUCTURE OF PROBABLE DIHYDROLIPAMIDE ACETYLTRANSFERASE FROM LISTERIA MONOCYTOGENES 4B F2365
 
Authors :  Y. Patskovsky, R. Toro, M. Gilmore, J. M. Sauder, S. K. Burley, S. C. Almo, New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date :  23 Mar 10  (Deposition) - 07 Apr 10  (Release) - 07 Apr 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  2-Oxoacid Dehydrogenases Acyltransferase, Structural Genomics, Psi, Protein Structure Initiative, New York Structural Genomix Research Consortium, Nysgxrc, Acyltransferase, Lipoyl, Transferase, New York Sgx Research Center For Structural Genomics (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Patskovsky, R. Toro, M. Gilmore, J. M. Sauder, S. K. Burley, S. C. Almo
Crystal Structure Of A Catalytic Domain Of Dihydrolipamide Acetyltransferase From Listeria Monocytogenes 4B F2365
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - 2-OXOISOVALERATE DEHYDROGENASE E2 COMPONENT, DIHYDROLIPAMIDE ACETYLTRANSFERASE
    Chains: A, B, C
    EC Number: 2.3.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: C-TERMINAL FRAGMENT, RESIDUES 172-416
    Gene: LMOF2365_1391
    Organism Scientific: LISTERIA MONOCYTOGENES
    Organism Taxid: 265669
    Strain: F2365

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 28)

Asymmetric/Biological Unit (3, 28)
No.NameCountTypeFull Name
1CL9Ligand/IonCHLORIDE ION
2GOL8Ligand/IonGLYCEROL
3PO411Ligand/IonPHOSPHATE ION

(-) Sites  (28, 28)

Asymmetric Unit (28, 28)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:206 , ILE A:209 , HIS A:211BINDING SITE FOR RESIDUE CL A 1
02AC2SOFTWAREHIS A:386 , ARG A:387 , ILE A:388 , ARG C:195 , LEU C:288 , LEU C:289BINDING SITE FOR RESIDUE PO4 A 2
03AC3SOFTWARELYS A:257 , ASP A:298 , GLU A:299 , ARG B:181BINDING SITE FOR RESIDUE PO4 A 9
04AC4SOFTWAREARG A:227 , LYS A:231BINDING SITE FOR RESIDUE PO4 A 10
05AC5SOFTWARESER A:335 , SER A:338 , VAL A:358 , GLU A:359 , ILE A:361BINDING SITE FOR RESIDUE PO4 A 11
06AC6SOFTWAREHIS A:274 , GLY A:328 , GLY A:329 , PRO A:351 , PRO C:179 , SER C:182BINDING SITE FOR RESIDUE GOL A 425
07AC7SOFTWAREMET A:202 , LEU A:289 , ILE A:347 , ASN A:349 , HIS B:386BINDING SITE FOR RESIDUE GOL A 426
08AC8SOFTWARELYS A:206 , CL B:1 , HOH B:72 , LYS B:206 , CL C:1 , LYS C:206 , HOH C:428BINDING SITE FOR RESIDUE GOL A 427
09AC9SOFTWARESER A:344 , GLN A:357BINDING SITE FOR RESIDUE CL A 428
10BC1SOFTWAREGLU A:217 , GLN A:343 , ASN A:379 , GLU B:217 , ARG C:364BINDING SITE FOR RESIDUE GOL A 429
11BC2SOFTWAREGLY A:391 , ASN C:334 , GOL C:425BINDING SITE FOR RESIDUE CL A 430
12BC3SOFTWAREARG A:225 , VAL A:374 , ARG A:375 , ASP B:369 , ASP B:370 , MET B:371BINDING SITE FOR RESIDUE GOL A 431
13BC4SOFTWARELYS A:206 , GOL A:427 , HOH B:72 , LYS B:206 , ILE B:209 , HIS B:211BINDING SITE FOR RESIDUE CL B 1
14BC5SOFTWAREGLU B:208 , TRP B:266 , HIS B:350 , ARG B:387BINDING SITE FOR RESIDUE PO4 B 3
15BC6SOFTWAREARG B:195 , ASP B:287 , LEU B:289 , HIS C:386 , ARG C:387 , ILE C:388 , LEU C:389 , ASP C:390BINDING SITE FOR RESIDUE PO4 B 12
16BC7SOFTWAREASN B:334 , GLY B:346 , ILE B:347 , ILE B:355 , CL B:428 , HIS C:386BINDING SITE FOR RESIDUE GOL B 425
17BC8SOFTWAREASN A:334 , GLY B:391BINDING SITE FOR RESIDUE CL B 426
18BC9SOFTWARESER B:344 , GLN B:357BINDING SITE FOR RESIDUE CL B 427
19CC1SOFTWAREASN B:334 , GOL B:425 , HIS C:386 , GLY C:391BINDING SITE FOR RESIDUE CL B 428
20CC2SOFTWAREGOL A:427 , LYS B:206 , LYS C:206 , ILE C:209 , HIS C:211BINDING SITE FOR RESIDUE CL C 1
21CC3SOFTWAREARG C:227 , LYS C:231BINDING SITE FOR RESIDUE PO4 C 4
22CC4SOFTWAREARG C:181 , ALA C:184 , LYS C:257 , ASP C:298 , GLU C:299BINDING SITE FOR RESIDUE PO4 C 5
23CC5SOFTWARESER C:335 , GLY C:337 , VAL C:358 , GLU C:359 , ILE C:361BINDING SITE FOR RESIDUE PO4 C 6
24CC6SOFTWAREGLU C:208 , HIS C:350 , ARG C:387BINDING SITE FOR RESIDUE PO4 C 7
25CC7SOFTWARELYS C:300 , SER C:301 , LYS C:303 , GLY C:304BINDING SITE FOR RESIDUE PO4 C 8
26CC8SOFTWAREHIS A:386 , CL A:430 , MET C:202 , LEU C:289 , GLY C:346 , ILE C:347BINDING SITE FOR RESIDUE GOL C 425
27CC9SOFTWAREHOH C:67 , VAL C:293 , MET C:326 , GLY C:328 , GLY C:329 , ASN C:349 , HIS C:350 , PRO C:351BINDING SITE FOR RESIDUE GOL C 426
28DC1SOFTWAREGLN C:357BINDING SITE FOR RESIDUE CL C 427

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3MAE)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1His A:350 -Pro A:351
2His B:350 -Pro B:351
3His C:350 -Pro C:351

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3MAE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3MAE)

(-) Exons   (0, 0)

(no "Exon" information available for 3MAE)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:234
                                                                                                                                                                                                                                                                          
               SCOP domains d3maea_ A: automated matches                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeee.hhhhhhhhhhhhhhhhhh.eeeeeeeeehhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh....eeee..eeee.....eee...........ee.hhhhhhhhhhhhhhhhhhhhhhh...hhhhhh...eeeehhhhhh..eee........eeeeeeeeeeeeeee..eeeeeeeeeeeeeee....hhhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3mae A 183 AAGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQLNSTWAGDKIIEHANINISIAIAAGDLLYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQSMGIINHPQAAILQVESIVKRPVIIDDMIAVRDMVNLCLSIDHRILDGLLAGKFLQAIKANVEKISKENTALY 416
                                   192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412    


Chain B from PDB  Type:PROTEIN  Length:240
                                                                                                                                                                                                                                                                                
               SCOP domains d3maeb_ B: automated matches                                                                                                                                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........eeee.hhhhhhhhhhhhhhhhhh.eeeeeeeeehhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.eee...eeee.....eee.eee..eee..ee......hhhhhhhhhhhhhhhhhhh..hhhhhh...eeeehhhhhh..eee........eeeeeeeeeeeeeee..eeeeeeeeeeeeeee....hhhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3mae B 177 TPPVRSAAGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQLNSTWAGDKIIEHANINISIAIAAGDLLYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQSMGIINHPQAAILQVESIVKRPVIIDDMIAVRDMVNLCLSIDHRILDGLLAGKFLQAIKANVEKISKENTALY 416
                                   186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416


Chain C from PDB  Type:PROTEIN  Length:239
                                                                                                                                                                                                                                                                               
               SCOP domains d3maec_ C: automated matches                                                                                                                                                                                                                    SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeee.hhhhhhhhhhhhhhhhhh.eeeeeeeeehhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.eeee..eeee.....eee.ee....ee..ee.hhhhhhhhhhhhhhhhhhhhhhh...hhhhhh...eeeehhhhhh..eee........eeeeeeeeeeeeeee..eeeeeeeeeeeeeee....hhhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mae C 178 PPVRSAAGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQLNSTWAGDKIIEHANINISIAIAAGDLLYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQSMGIINHPQAAILQVESIVKRPVIIDDMIAVRDMVNLCLSIDHRILDGLLAGKFLQAIKANVEKISKENTALY 416
                                   187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3MAE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3MAE)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3MAE)

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