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(-) Description

Title :  CRYSTAL STRUCTURE OF SARO_0823 (YP_496102.1) A PROTEIN OF UNKNOWN FUNCTION FROM NOVOSPHINGOBIUM AROMATICIVORANS DSM 12444 AT 1.22 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  16 Mar 10  (Deposition) - 21 Apr 10  (Release) - 21 Apr 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.22
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Structural Genomics, Unknown Function, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Uncharacterized Acr, Cog1430 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Saro_0823 (Yp_496102. 1) A Protein Of Unknown Function From Novosphingobium Aromaticivorans Dsm 12444 At 1. 22 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: SARO_0823
    Organism Scientific: NOVOSPHINGOBIUM AROMATICIVORANS
    Organism Taxid: 279238
    Strain: DSM 12444

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 16)

Asymmetric Unit (2, 16)
No.NameCountTypeFull Name
1EDO6Ligand/Ion1,2-ETHANEDIOL
2MSE10Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
1EDO3Ligand/Ion1,2-ETHANEDIOL
2MSE5Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 8)
No.NameCountTypeFull Name
1EDO3Ligand/Ion1,2-ETHANEDIOL
2MSE5Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:45 , THR A:68 , GLU A:71 , HOH A:213 , HOH A:229 , HOH A:323 , HOH A:363BINDING SITE FOR RESIDUE EDO A 201
2AC2SOFTWAREGLY A:150 , LEU A:151 , ARG A:154 , HOH A:448 , HOH A:518 , GLY B:149 , GLY B:150 , LEU B:151 , HOH B:452BINDING SITE FOR RESIDUE EDO A 204
3AC3SOFTWAREASN A:126 , VAL A:128 , HOH A:302 , HOH A:325 , HOH A:466 , ALA B:153 , ARG B:154 , LEU B:155 , GLY B:156 , HOH B:287BINDING SITE FOR RESIDUE EDO A 205
4AC4SOFTWAREALA A:153 , ARG A:154 , LEU A:155 , HOH A:450 , HOH B:282 , HOH B:367 , HOH B:654BINDING SITE FOR RESIDUE EDO B 202
5AC5SOFTWAREHOH A:343 , ARG B:67 , SER B:69 , GLN B:72 , ARG B:92 , ASN B:93 , HOH B:443BINDING SITE FOR RESIDUE EDO B 203
6AC6SOFTWAREGLU B:33 , PRO B:49 , THR B:51 , ARG B:58 , ARG B:103 , GLU B:164BINDING SITE FOR RESIDUE EDO B 206

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3M7A)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Asn A:93 -Pro A:94
2Asn B:93 -Pro B:94

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3M7A)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3M7A)

(-) Exons   (0, 0)

(no "Exon" information available for 3M7A)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:140
 aligned with Q2GA55_NOVAD | Q2GA55 from UniProtKB/TrEMBL  Length:165

    Alignment length:140
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165
         Q2GA55_NOVAD    26 AGTKTAAEAAAPAVHPVSGLQIVPVTVTGTSGRHVFRSELARTSAEQAKGLMFRTELGDEEGMIFLRNPPDMATFWMRNTVIPLDIIFVGLDRRVMNIAANAVPYDETPLPAAGPTLAVLEINGGLAARLGIKPGDKVEW 165
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhh..ee......eeeeeeeee..eeeeeeeeee.hhhhhhhh..........eeeeee.....eeee........eeeeee.....eeeeeeee.......eeeeee..eeeeee.hhhhhhh.....eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3m7a A   0 GGTKTAAEAAAPAVHPVSGLQIVPVTVTGTSGRHVFRSELARTSAEQAKGLmFRTELGDEEGmIFLRNPPDmATFWmRNTVIPLDIIFVGLDRRVmNIAANAVPYDETPLPAAGPTLAVLEINGGLAARLGIKPGDKVEW 165
                            ||      35        45        55        65        75 |      85  |     95 |    |105       115     | 125       135       145       155       165
                            ||                                                77-MSE     88-MSE   97-MSE|                121-MSE                                        
                            0|                                                                        102-MSE                                                           
                            27                                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:140
 aligned with Q2GA55_NOVAD | Q2GA55 from UniProtKB/TrEMBL  Length:165

    Alignment length:140
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165
         Q2GA55_NOVAD    26 AGTKTAAEAAAPAVHPVSGLQIVPVTVTGTSGRHVFRSELARTSAEQAKGLMFRTELGDEEGMIFLRNPPDMATFWMRNTVIPLDIIFVGLDRRVMNIAANAVPYDETPLPAAGPTLAVLEINGGLAARLGIKPGDKVEW 165
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------------------------------DUF192-3m7aB01 B:60-165                                                                                    Pfam domains (1)
           Pfam domains (2) ----------------------------------DUF192-3m7aB02 B:60-165                                                                                    Pfam domains (2)
         Sec.struct. author ....hhhhhh..ee......eeeeeeeee..eeeeeeeeee.hhhhhhhh..........eeeeeeeeeee..ee........eeeeee.....eeeeeeee.......ee....eeeeeeee.hhhhhhh.....eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3m7a B   0 GGTKTAAEAAAPAVHPVSGLQIVPVTVTGTSGRHVFRSELARTSAEQAKGLmFRTELGDEEGmIFLRNPPDmATFWmRNTVIPLDIIFVGLDRRVmNIAANAVPYDETPLPAAGPTLAVLEINGGLAARLGIKPGDKVEW 165
                            ||      35        45        55        65        75 |      85  |     95 |    |105       115     | 125       135       145       155       165
                            0|                                                77-MSE     88-MSE   97-MSE|                121-MSE                                        
                            27                                                                        102-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3M7A)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3M7A)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: no clan defined [family: DUF192] (1)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3M7A)

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