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(-) Description

Title :  STRUCTURE OF THE N-TERMINAL CLASS II ALDOLASE DOMAIN OF A CONSERVED PROTEIN FROM THERMOPLASMA ACIDOPHILUM
 
Authors :  M. E. Cuff, H. Li, S. Clancy, A. Joachimiak, Midwest Center For Struc Genomics (Mcsg)
Date :  11 Mar 10  (Deposition) - 14 Apr 10  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Short Chain Dehydrogenase, Class Ii Aldolase, Adducin Head Domain, Carbohydrate Metabolism, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Oxidoreductase, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. E. Cuff, H. Li, S. Clancy, A. Joachimiak
Structure Of The N-Terminal Class Ii Aldolase Domain Of A Conserved Protein From Thermoplasma Acidophilum
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG19
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: ALDOLASE II DOMAIN RESIDUES 1-219
    Gene: PRK08324, TA0481
    Organism Scientific: THERMOPLASMA ACIDOPHILUM
    Organism Taxid: 2303
    Strain: DSM1728

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric/Biological Unit (3, 9)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2MSE7Mod. Amino AcidSELENOMETHIONINE
3ZN1Ligand/IonZINC ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:113 , HIS A:127 , HIS A:129 , HIS A:185 , HOH A:362BINDING SITE FOR RESIDUE ZN A 220
2AC2SOFTWARELEU A:134 , ASN A:138 , LYS A:148 , LYS A:184BINDING SITE FOR RESIDUE CL A 221

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3M4R)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3M4R)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3M4R)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3M4R)

(-) Exons   (0, 0)

(no "Exon" information available for 3M4R)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:213
 aligned with Q9HKW2_THEAC | Q9HKW2 from UniProtKB/TrEMBL  Length:654

    Alignment length:214
                             1                                                                                                                                                                                                                    
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209    
         Q9HKW2_THEAC     - -MQNRWAETKFDSDIDEVVYGSRLIGSDPDLVLHGGGNTSVKTTERDHAGRIISVLRVKNSGSNLGTIDSRGFTGIRMDDALAAAKIDKMTDEAMVDYLKKSMVNPSEPSPSVETFLHAFLPYKFVMHSHADAILSITNTDLPSDQIAKILGNVVVLPYIPPGFTLAKEVMNCFKKGIDGIVLRKHGLLTFGDTGKEAYDRHINIVSRAENFIR 213
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------Aldolase_II-3m4rA0 1 A:15-212                                                                                                                                                                         - Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhhhh......-...eeeeeeeee.....eeeeeeee....hhhhhhhh.eeeeehhhhhhhhhh...hhhhhhhhhhhh...........hhhhhhh....eeeee.hhhhhhhhh...hhhhhhhhhh.eeee.....hhhhhhhhhhhh.....eeee...eeeeee.hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3m4r A   0 AmQNRWAETKFDSDIDEVVYGSRLIGSDPDLVL-GGGNTSVKTTERDHAGRIISVLRVKNSGSNLGTIDSRGFTGIRmDDALAAAKIDKmTDEAmVDYLKKSmVNPSEPSPSVETFLHAFLPYKFVmHSHADAILSITNTDLPSDQIAKILGNVVVLPYIPPGFTLAKEVmNCFKKGIDGIVLRKHGLLTFGDTGKEAYDRHINIVSRAENFIR 213
                             |       9        19        29  | |   39        49        59        69       |79        89    |   99  |    109       119      |129       139       149       159       169|      179       189       199       209    
                             |                             32 |                                         77-MSE      89-MSE|     102-MSE                 126-MSE                                     170-MSE                                       
                             1-MSE                           34                                                          94-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3M4R)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3M4R)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: Aldolase_II] (19)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q9HKW2_THEAC | Q9HKW2)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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