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(-) Description

Title :  THE STRUCTURE OF A PUTATIVE GLUTATHIONE S-TRANSFERASE FROM CORYNEBACTERIUM GLUTAMICUM
 
Authors :  M. E. Cuff, N. Marshall, G. Cobb, A. Joachimiak, Midwest Center For S Genomics (Mcsg)
Date :  04 Mar 10  (Deposition) - 14 Apr 10  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (2x)
Biol. Unit 2:  B,C  (1x)
Keywords :  Ecm4-Like Subfamily, Gst_c Family, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. E. Cuff, N. Marshall, G. Cobb, A. Joachimiak
The Structure Of A Putative Glutathione S-Transferase From Corynebacterium Glutamicum
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE GLUTATHIONE S-TRANSFERASE
    Chains: A, B, C
    EC Number: 2.5.1.18
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG19
    Expression System Strain: MODIFIED BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: CG1426, CGL1264
    Organism Scientific: CORYNEBACTERIUM GLUTAMICUM
    Organism Taxid: 1718
    Strain: ATCC 13032

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (2x): A  
Biological Unit 2 (1x):  BC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 25)

Asymmetric Unit (3, 25)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2GOL12Ligand/IonGLYCEROL
3MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 18)
No.NameCountTypeFull Name
1EDO-1Ligand/Ion1,2-ETHANEDIOL
2GOL10Ligand/IonGLYCEROL
3MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (3, 16)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2GOL7Ligand/IonGLYCEROL
3MSE8Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPRO C:152 , ILE C:156 , ALA C:183 , MSE C:186 , ARG C:244 , HOH C:500BINDING SITE FOR RESIDUE GOL C 360
02AC2SOFTWAREASP B:30 , LYS B:145 , HOH B:684 , HOH B:694BINDING SITE FOR RESIDUE GOL B 360
03AC3SOFTWAREPRO B:152 , ALA B:183 , MSE B:186 , ARG B:244 , HOH B:450 , HOH B:818BINDING SITE FOR RESIDUE GOL B 361
04AC4SOFTWAREASP A:30 , PHE A:50 , LYS A:145 , HOH A:562 , HOH A:771BINDING SITE FOR RESIDUE GOL A 360
05AC5SOFTWAREGLU A:181 , ARG A:226 , ARG A:230 , MSE A:234 , GLY A:235BINDING SITE FOR RESIDUE GOL A 361
06AC6SOFTWAREPRO C:42 , PHE C:50BINDING SITE FOR RESIDUE GOL C 361
07AC7SOFTWAREARG C:278 , PRO C:324 , HIS C:325 , GLY C:326 , HOH C:778BINDING SITE FOR RESIDUE GOL C 362
08AC8SOFTWAREGLU C:181 , ARG C:230 , MSE C:234BINDING SITE FOR RESIDUE EDO C 363
09AC9SOFTWAREASP A:35 , GLN A:45 , HIS A:51 , HOH A:593 , HOH C:373BINDING SITE FOR RESIDUE GOL A 362
10BC1SOFTWAREPHE C:281 , GLN C:282 , PHE C:357BINDING SITE FOR RESIDUE GOL C 364
11BC2SOFTWAREARG A:278 , PRO A:324 , GLY A:326BINDING SITE FOR RESIDUE GOL A 363
12BC3SOFTWARETRP B:69 , HIS B:95 , ASP B:96 , ASN B:195BINDING SITE FOR RESIDUE GOL B 362
13BC4SOFTWAREPRO A:152 , ILE A:156 , TYR A:174 , ALA A:183 , MSE A:186 , ARG A:244 , HOH A:403 , HOH A:709 , HOH A:710BINDING SITE FOR RESIDUE GOL A 364

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3M1G)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Val A:135 -Pro A:136
2Gly A:315 -Pro A:316
3Val B:135 -Pro B:136
4Gly B:315 -Pro B:316
5Val C:135 -Pro C:136
6Gly C:315 -Pro C:316

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3M1G)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3M1G)

(-) Exons   (0, 0)

(no "Exon" information available for 3M1G)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:297
 aligned with Q8NR03_CORGL | Q8NR03 from UniProtKB/TrEMBL  Length:359

    Alignment length:333
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355   
         Q8NR03_CORGL    26 NYIDDRIVADVPAGSEPIAQEDGTFHWPVEAGRYRLVAARACPWAHRTVITRRLLGLENVISLGLTGPTHDVRSWTFDLDPNHLDPVLQIPRLQDAYFNRFPDYPRGITVPALVEESSKKVVTNDYPSITIDFNLEWKQFHREGAPNLYPAELREEMAPVMKRIFTEVNNGVYRTGFAGSQEAHNEAYKRLWVALDWLEDRLSTRRYLMGDHITEADIRLYPTLVRFDAVYHGHFKCGRNKITEMPNLWGYLRDLFQTPGFGDTTDFTEIKQHYYITHAEINPTRIVPVGPDLSGFATPHGREKLGGSPFAEGVTLPGPIPAGEEVKNPEPFQ 358
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee.........ee.....eeee.....eeeee...hhhhhhhhhhhhhhh.....eeee......------------------------------------....eeee.....eee.hhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh..............hhhhhh..hhhhhh........................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3m1g A  26 NYIDDRIVADVPAGSEPIAQEDGTFHWPVEAGRYRLVAARACPWAHRTVITRRLLGLENVISLGLTGPTHD------------------------------------ITVPALVEESSKKVVTNDYPSITIDFNLEWKQFHREGAPNLYPAELREEmAPVmKRIFTEVNNGVYRTGFAGSQEAHNEAYKRLWVALDWLEDRLSTRRYLmGDHITEADIRLYPTLVRFDAVYHGHFKCGRNKITEmPNLWGYLRDLFQTPGFGDTTDFTEIKQHYYITHAEINPTRIVPVGPDLSGFATPHGREKLGGSPFAEGVTLPGPIPAGEEVKNPEPFQ 358
                                    35        45        55        65        75        85        95|        -         -         -       135       145       155       165       175      |185|      195       205       215       225       235       245       255       265    |  275       285       295       305       315       325       335       345       355   
                                                                                                 96                                  133                                              182-MSE                                             234-MSE                             270-MSE                                                                                    
                                                                                                                                                                                          186-MSE                                                                                                                                                                        


Chain B from PDB  Type:PROTEIN  Length:297
 aligned with Q8NR03_CORGL | Q8NR03 from UniProtKB/TrEMBL  Length:359

    Alignment length:333
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355   
         Q8NR03_CORGL    26 NYIDDRIVADVPAGSEPIAQEDGTFHWPVEAGRYRLVAARACPWAHRTVITRRLLGLENVISLGLTGPTHDVRSWTFDLDPNHLDPVLQIPRLQDAYFNRFPDYPRGITVPALVEESSKKVVTNDYPSITIDFNLEWKQFHREGAPNLYPAELREEMAPVMKRIFTEVNNGVYRTGFAGSQEAHNEAYKRLWVALDWLEDRLSTRRYLMGDHITEADIRLYPTLVRFDAVYHGHFKCGRNKITEMPNLWGYLRDLFQTPGFGDTTDFTEIKQHYYITHAEINPTRIVPVGPDLSGFATPHGREKLGGSPFAEGVTLPGPIPAGEEVKNPEPFQ 358
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee.........ee.....eeee.....eeeee...hhhhhhhhhhhhhhh.....eeee......------------------------------------....eeee.....eee.hhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh..............hhhhhh..hhhhhh........................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3m1g B  26 NYIDDRIVADVPAGSEPIAQEDGTFHWPVEAGRYRLVAARACPWAHRTVITRRLLGLENVISLGLTGPTHD------------------------------------ITVPALVEESSKKVVTNDYPSITIDFNLEWKQFHREGAPNLYPAELREEmAPVmKRIFTEVNNGVYRTGFAGSQEAHNEAYKRLWVALDWLEDRLSTRRYLmGDHITEADIRLYPTLVRFDAVYHGHFKCGRNKITEmPNLWGYLRDLFQTPGFGDTTDFTEIKQHYYITHAEINPTRIVPVGPDLSGFATPHGREKLGGSPFAEGVTLPGPIPAGEEVKNPEPFQ 358
                                    35        45        55        65        75        85        95|        -         -         -       135       145       155       165       175      |185|      195       205       215       225       235       245       255       265    |  275       285       295       305       315       325       335       345       355   
                                                                                                 96                                  133                                              182-MSE                                             234-MSE                             270-MSE                                                                                    
                                                                                                                                                                                          186-MSE                                                                                                                                                                        


Chain C from PDB  Type:PROTEIN  Length:297
 aligned with Q8NR03_CORGL | Q8NR03 from UniProtKB/TrEMBL  Length:359

    Alignment length:334
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355    
         Q8NR03_CORGL    26 NYIDDRIVADVPAGSEPIAQEDGTFHWPVEAGRYRLVAARACPWAHRTVITRRLLGLENVISLGLTGPTHDVRSWTFDLDPNHLDPVLQIPRLQDAYFNRFPDYPRGITVPALVEESSKKVVTNDYPSITIDFNLEWKQFHREGAPNLYPAELREEMAPVMKRIFTEVNNGVYRTGFAGSQEAHNEAYKRLWVALDWLEDRLSTRRYLMGDHITEADIRLYPTLVRFDAVYHGHFKCGRNKITEMPNLWGYLRDLFQTPGFGDTTDFTEIKQHYYITHAEINPTRIVPVGPDLSGFATPHGREKLGGSPFAEGVTLPGPIPAGEEVKNPEPFQK 359
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------------------------------------GST_N_2-3m1gC04 C:66-160                                                                       ---------------------------------------------GST_C_2-3m1gC01 C:206-279                                                 -------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ----------------------------------------GST_N_2-3m1gC05 C:66-160                                                                       ---------------------------------------------GST_C_2-3m1gC02 C:206-279                                                 -------------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) ----------------------------------------GST_N_2-3m1gC06 C:66-160                                                                       ---------------------------------------------GST_C_2-3m1gC03 C:206-279                                                 -------------------------------------------------------------------------------- Pfam domains (3)
         Sec.struct. author .....eee.........ee.....eeee.....eeeee...hhhhhhhhhhhhhhh.....eeee.....-------------------------------------....eeee.....eee.hhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhh....hhhhhh.....hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh..............hhhhhh..hhhhhh............................ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3m1g C  26 NYIDDRIVADVPAGSEPIAQEDGTFHWPVEAGRYRLVAARACPWAHRTVITRRLLGLENVISLGLTGPTH-------------------------------------ITVPALVEESSKKVVTNDYPSITIDFNLEWKQFHREGAPNLYPAELREEmAPVmKRIFTEVNNGVYRTGFAGSQEAHNEAYKRLWVALDWLEDRLSTRRYLmGDHITEADIRLYPTLVRFDAVYHGHFKCGRNKITEmPNLWGYLRDLFQTPGFGDTTDFTEIKQHYYITHAEINPTRIVPVGPDLSGFATPHGREKLGGSPFAEGVTLPGPIPAGEEVKNPEPFQK 359
                                    35        45        55        65        75        85        95         -         -         -       135       145       155       165       175      |185|      195       205       215       225       235       245       255       265    |  275       285       295       305       315       325       335       345       355    
                                                                                                95                                   133                                              182-MSE                                             234-MSE                             270-MSE                                                                                     
                                                                                                                                                                                          186-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3M1G)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3M1G)

(-) Pfam Domains  (2, 6)

Asymmetric Unit
(-)
Clan: GST_C (118)
(-)
Clan: Thioredoxin (367)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (Q8NR03_CORGL | Q8NR03)
molecular function
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.

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