3M16 - JenaLib

Title :   STRUCTURE OF A TRANSALDOLASE FROM OLEISPIRA ANTARCTICA

Authors :   A. U. Singer, O. Kagan, R. Zhang, A. Joachimiak, A. M. Edwards, A. Savche Midwest Center For Structural Genomics (Mcsg)

Date :   04 Mar 10 (Deposition) - 23 Jun 10 (Release) - 07 Aug 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.79

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Oleispira Antarctica, Transaldolase, Dimer, Molecular Replacement, Swiss-Model, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Kube, T. N. Chernikova, Y. Al-Ramahi, A. Beloqui, N. Lopez-Cortez, M. E. Guazzaroni, H. J. Heipieper, S. Klages, O. R. Kotsyurbenko, I. Langer, T. Y. Nechitaylo, H. Lunsdorf, M. Fernandez, S. Juarez, S. Ciordia, A. Singer, O. Kagan, O. Egorova, P. Alain Petit, P. Stogios, Y. Kim, A. Tchigvintsev, R. Flick, R. Denaro, M. Genovese, J. P. Albar, O. N. Reva, M. Martinez-Gomariz, H. Tran, M. Ferrer, A. Savchenko, A. F. Yakunin, M. M. Yakimov, O. V. Golyshina, R. Reinhardt, P. N. Golyshin
Genome Sequence And Functional Genomic Analysis Of The Oil-Degrading Bacterium Oleispira Antarctica.
Nat Commun V. 4 2156 2013
PubMed-ID: 23877221 | Reference-DOI: 10.1038/NCOMMS3156

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 6)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:326
 aligned with U3KRE8_OLEAN | U3KRE8 from UniProtKB/TrEMBL  Length:329

    Alignment length:328
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320        
         U3KRE8_OLEAN     1 GMSAQAKNKLEALKAMTTVVADTGDIEAIKQFKPVDATTNPSLILKAAKLANYQHLIEEAIDWALQIKGNDKNSQTTLENVGDKLAVNIGCEVLTSIPGVISTEVDARLSFDTQATVAKARKLIRLYQDAGIDSDRILIKIASTWEGIQAAKILEAEGIHCNLTLLFHFAQAQACAEAGTTLISPFVGRILDWYKANSGQSEYSASEDPGVVSVTEIYNFYKSHGFKTIVMGASFRNTGEIEELAGCDRLTISPELLAQLEADTSPLEQKLFPIKETKDTPELLTEASFRWAMNNDPMAHDKLADGIRRFAADQVTLESMLSKKISQR 328
               SCOP domains d3m1 6a_ A: automated matches                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....-..hhhhhhh...eeeee..hhhhhhhhh..eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..-...hhhhhhhhhhhhhhhhhhhhh.....eeee.hhhhh.hhhhhhhhhhhhhhhhhhh..hhh.eeeeee.hhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhh...eeeehhhhhhhhhhh...........hhhhhhhhhhhhhhhhh....eeee....hhhhhhh.....eeeehhhhhhhhhhh.....................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3m16 A   0 GmSA-AKNKLEALKAmTTVVADTGDIEAIKQFKPVDATTNPSLILKAAKLANYQHLIEEAIDWALQIKGN-KNSQTTLENVGDKLAVNIGCEVLTSIPGVISTEVDARLSFDTQATVAKARKLIRLYQDAGIDSDRILIKIASTWEGIQAAKILEAEGIHCNLTLLFHFAQAQACAEAGTTLISPFVGRILDWYKANSGQSEYSASEDPGVVSVTEIYNFYKSHGFKTIVmGASFRNTGEIEELAGCDRLTISPELLAQLEADTSPLEQKLFPIKETKDTPELLTEASFRWAmNNDPmAHDKLADGIRRFAADQVTLESmLSKKISQR 327
                             | | |   9     |  19        29        39        49        59        69 |      79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229|      239       249       259       269       279       289  |    299       309       319        
                             | 3 5        15-MSE                                                69 |                                                                                                                                                            230-MSE                                                       292-MSE|                   319-MSE    
                             1-MSE                                                                71                                                                                                                                                                                                                               297-MSE

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (6, 6)

Asymmetric Unit(hide GO term definitions)

Chain A (U3KRE8_OLEAN | U3KRE8)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0004801	sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	Catalysis of the reaction: sedoheptulose 7-phosphate + D-glyceraldehyde 3-phosphate = D-erythrose 4-phosphate + D-fructose 6-phosphate.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0006098	pentose-phosphate shunt	The glucose-6-phosphate catabolic process in which, coupled to NADPH synthesis, glucose-6-P is oxidized with the formation of carbon dioxide (CO2) and ribulose 5-phosphate; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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