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(-) Description

Title :  CRYSTAL STRUCTURE OF PUTATIVE ALDOLASE FROM KLEBSIELLA PNEUMONIAE.
 
Authors :  C. Chang, E. Rakowski, S. Clancy, A. Joachimiak, Midwest Center For Structural Genomics (Mcsg)
Date :  03 Mar 10  (Deposition) - 31 Mar 10  (Release) - 31 Mar 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.20
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Mcsg, Psi-2, Structural Genomics, Protein Structure Initiative, Midwest Center For Structural Genomics, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Chang, E. Rakowski, S. Clancy, A. Joachimiak
Crystal Structure Of Putative Aldolase From Klebsiella Pneumoniae.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE ALDOLASE
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG19
    Expression System Strain: BL21(DE3)MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: KPN78578_45670, KPN_04640
    Organism Scientific: KLEBSIELLA PNEUMONIAE SUBSP. PNEUMONIAE
    Organism Taxid: 272620
    Strain: ATCC 700721 / MGH 78578
    Synonym: PUTATIVE PERIPLASMIC PROTEIN

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 34)

Asymmetric/Biological Unit (4, 34)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MSE28Mod. Amino AcidSELENOMETHIONINE
3SO44Ligand/IonSULFATE ION
4TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:191 , GLY A:192 , TYR A:218 , SER A:219 , HOH A:251 , HOH A:425 , HOH A:723 , HOH A:956 , HOH A:1037 , HOH A:1174 , HOH A:1436BINDING SITE FOR RESIDUE SO4 A 301
2AC2SOFTWAREGLY B:191 , GLY B:192 , TYR B:218 , SER B:219 , HOH B:277 , HOH B:594 , HOH B:1167 , HOH B:1440 , HOH B:1451 , HOH B:1476BINDING SITE FOR RESIDUE SO4 B 301
3AC3SOFTWAREASN B:109 , GLU B:110 , HOH B:334 , HOH B:897 , HOH B:1219 , HOH B:1273BINDING SITE FOR RESIDUE GOL B 302
4AC4SOFTWAREGLY C:191 , GLY C:192 , TYR C:218 , SER C:219 , HOH C:265 , HOH C:459 , HOH C:1011 , HOH C:1148 , HOH C:1204 , HOH C:1442 , HOH C:1478BINDING SITE FOR RESIDUE SO4 C 301
5AC5SOFTWARESER C:20 , ASP C:22 , ASN C:228 , HOH C:333 , HOH C:360 , HOH C:1257 , HOH C:1280 , HOH C:1507BINDING SITE FOR RESIDUE TRS C 302
6AC6SOFTWAREGLY D:191 , GLY D:192 , TYR D:218 , SER D:219 , HOH D:263 , HOH D:299 , HOH D:824 , HOH D:1015 , HOH D:1025BINDING SITE FOR RESIDUE SO4 D 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3M0Z)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Phe A:162 -Pro A:163
2Phe B:162 -Pro B:163
3Phe C:162 -Pro C:163
4Phe D:162 -Pro D:163

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3M0Z)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3M0Z)

(-) Exons   (0, 0)

(no "Exon" information available for 3M0Z)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:248
 aligned with A6THF7_KLEP7 | A6THF7 from UniProtKB/TrEMBL  Length:246

    Alignment length:248
                              1                                                                                                                                                                                                                                                     
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238        
         A6THF7_KLEP7     - --MKLTPNFYRDRVCLNVLAGSKDNAREIYDAAEGHVLVGVLSKNYPDVASAVVDMRDYAKLIDNALSVGLGAGDPNQSAMVSEISRQVQPQHVNQVFTGVATSRALLGQNETVVNGLVSPTGTPGMVKISTGPLSSGAADGIVPLETAIALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVSKIIPHIYSSIIDKASGNTRPADVRQLLEMTKQLVK 246
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhh..eeee..hhhhhhhhhhhh...eeeeee.hhh.hhhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhhh..ee..hhhhhhhhhhhhh....eeeeee.......eee.....hhhhh...eeehhhhhhhhhhh...eeee.......hhhhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhh........hhhhh.......hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3m0z A  -1 NAmKLTPNFYRDRVCLNVLAGSKDNAREIYDAAEGHVLVGVLSKNYPDVASAVVDmRDYAKLIDNALSVGLGAGDPNQSAmVSEISRQVQPQHVNQVFTGVATSRALLGQNETVVNGLVSPTGTPGmVKISTGPLSSGAADGIVPLETAIALLKDmGGSSIKYFPmGGLKHRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVSKIIPHIYSSIIDKASGNTRPADVRQLLEmTKQLVK 246
                              |      8        18        28        38        48     |  58        68        78|       88        98       108       118      |128       138       148     | 158     | 168       178       188       198       208       218       228       238 |      
                              |                                                   54-MSE                   79-MSE                                       125-MSE                      154-MSE   164-MSE                                                                     240-MSE  
                              1-MSE                                                                                                                                                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:247
 aligned with A6THF7_KLEP7 | A6THF7 from UniProtKB/TrEMBL  Length:246

    Alignment length:247
                             1                                                                                                                                                                                                                                                     
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       
         A6THF7_KLEP7     - -MKLTPNFYRDRVCLNVLAGSKDNAREIYDAAEGHVLVGVLSKNYPDVASAVVDMRDYAKLIDNALSVGLGAGDPNQSAMVSEISRQVQPQHVNQVFTGVATSRALLGQNETVVNGLVSPTGTPGMVKISTGPLSSGAADGIVPLETAIALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVSKIIPHIYSSIIDKASGNTRPADVRQLLEMTKQLVK 246
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhh..eeee..hhhhhhhhhhhh...eeeeee.hhh.hhhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhhh..ee..hhhhhhhhhhhhh....eeeeee.......eee.....hhhhh...eeehhhhhhhhhhh...eeee.......hhhhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhh........hhhhh.......hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3m0z B   0 AmKLTPNFYRDRVCLNVLAGSKDNAREIYDAAEGHVLVGVLSKNYPDVASAVVDmRDYAKLIDNALSVGLGAGDPNQSAmVSEISRQVQPQHVNQVFTGVATSRALLGQNETVVNGLVSPTGTPGmVKISTGPLSSGAADGIVPLETAIALLKDmGGSSIKYFPmGGLKHRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVSKIIPHIYSSIIDKASGNTRPADVRQLLEmTKQLVK 246
                             |       9        19        29        39        49    |   59        69        79        89        99       109       119     | 129       139       149    |  159    |  169       179       189       199       209       219       229       239|      
                             1-MSE                                               54-MSE                   79-MSE                                       125-MSE                      154-MSE   164-MSE                                                                     240-MSE  


Chain C from PDB  Type:PROTEIN  Length:248
 aligned with A6THF7_KLEP7 | A6THF7 from UniProtKB/TrEMBL  Length:246

    Alignment length:248
                              1                                                                                                                                                                                                                                                     
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238        
         A6THF7_KLEP7     - --MKLTPNFYRDRVCLNVLAGSKDNAREIYDAAEGHVLVGVLSKNYPDVASAVVDMRDYAKLIDNALSVGLGAGDPNQSAMVSEISRQVQPQHVNQVFTGVATSRALLGQNETVVNGLVSPTGTPGMVKISTGPLSSGAADGIVPLETAIALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVSKIIPHIYSSIIDKASGNTRPADVRQLLEMTKQLVK 246
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhh..eeee..hhhhhhhhhhhh...eeeeee.hhh.hhhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhhh..ee..hhhhhhhhhhhhh....eeeeee.......eee.....hhhhh...eeehhhhhhhhhhh...eeee.......hhhhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhh........hhhhh.......hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3m0z C  -1 NAmKLTPNFYRDRVCLNVLAGSKDNAREIYDAAEGHVLVGVLSKNYPDVASAVVDmRDYAKLIDNALSVGLGAGDPNQSAmVSEISRQVQPQHVNQVFTGVATSRALLGQNETVVNGLVSPTGTPGmVKISTGPLSSGAADGIVPLETAIALLKDmGGSSIKYFPmGGLKHRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVSKIIPHIYSSIIDKASGNTRPADVRQLLEmTKQLVK 246
                              |      8        18        28        38        48     |  58        68        78|       88        98       108       118      |128       138       148     | 158     | 168       178       188       198       208       218       228       238 |      
                              1-MSE                                               54-MSE                   79-MSE                                       125-MSE                      154-MSE   164-MSE                                                                     240-MSE  


Chain D from PDB  Type:PROTEIN  Length:249
 aligned with A6THF7_KLEP7 | A6THF7 from UniProtKB/TrEMBL  Length:246

    Alignment length:249
                               1                                                                                                                                                                                                                                                     
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237         
         A6THF7_KLEP7     - ---MKLTPNFYRDRVCLNVLAGSKDNAREIYDAAEGHVLVGVLSKNYPDVASAVVDMRDYAKLIDNALSVGLGAGDPNQSAMVSEISRQVQPQHVNQVFTGVATSRALLGQNETVVNGLVSPTGTPGMVKISTGPLSSGAADGIVPLETAIALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVSKIIPHIYSSIIDKASGNTRPADVRQLLEMTKQLVK 246
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------DUF1341-3m0zD01 D:8-225                                                                                                                                                                                                   --------------------- Pfam domains (1)
           Pfam domains (2) ----------DUF1341-3m0zD02 D:8-225                                                                                                                                                                                                   --------------------- Pfam domains (2)
           Pfam domains (3) ----------DUF1341-3m0zD03 D:8-225                                                                                                                                                                                                   --------------------- Pfam domains (3)
           Pfam domains (4) ----------DUF1341-3m0zD04 D:8-225                                                                                                                                                                                                   --------------------- Pfam domains (4)
         Sec.struct. author .........hhhhh..eeee..hhhhhhhhhhhh...eeeeee.hhh.hhhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhhh..ee..hhhhhhhhhhhhh....eeeeee.......eee.....hhhhh...eeehhhhhhhhhhh...eeee.......hhhhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhh........hhhhh.......hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3m0z D  -2 SNAmKLTPNFYRDRVCLNVLAGSKDNAREIYDAAEGHVLVGVLSKNYPDVASAVVDmRDYAKLIDNALSVGLGAGDPNQSAmVSEISRQVQPQHVNQVFTGVATSRALLGQNETVVNGLVSPTGTPGmVKISTGPLSSGAADGIVPLETAIALLKDmGGSSIKYFPmGGLKHRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVSKIIPHIYSSIIDKASGNTRPADVRQLLEmTKQLVK 246
                               |     7        17        27        37        47      | 57        67        77 |      87        97       107       117       127       137       147      |157      |167       177       187       197       207       217       227       237  |      
                               1-MSE                                               54-MSE                   79-MSE                                       125-MSE                      154-MSE   164-MSE                                                                     240-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3M0Z)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3M0Z)

(-) Pfam Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Clan: TIM_barrel (694)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3M0Z)

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