3LYA - JenaLib

Title :   CRYSTAL STRUCTURE OF THE PERIPLASMIC DOMAIN OF CADC IN THE PRESENCE OF K2RECL6

Authors :   A. Eichinger, A. Skerra

Date :   26 Feb 10 (Deposition) - 09 Feb 11 (Release) - 06 Apr 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Alpha/Beta Domain, Alpha Domain, Activator, Dna-Binding, Transcription Regulation, Two-Component Regulatory System, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Eichinger, I. Haneburger, C. Koller, K. Jung, A. Skerra
Crystal Structure Of The Sensory Domain Of Escherichia Coli Cadc, A Member Of The Toxr-Like Protein Family.
Protein Sci. V. 20 656 2011
PubMed-ID: 21308846 | Reference-DOI: 10.1002/PRO.594

Compounds

Molecule 1 - TRANSCRIPTIONAL ACTIVATOR CADC
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET32A
	Expression System Strain	:	ORIGAMI B (DE3) PLYSS
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	RESIDUES 188-512
	Gene	:	B4133, CADC, JW4094
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	511145
	Strain	:	MG1655

Structural Features

Chains, Units

		1
Asymmetric Unit	:	A
Biological Unit 1 (2x)	:	A

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (1, 16)

Asymmetric Unit (1, 16)

No.	Name	Count	Type	Full Name
1	RHE	16	Ligand/Ion	RHENIUM (IV) HEXACHLORIDE

Biological Unit 1 (1, 32)

No.	Name	Count	Type	Full Name
1	RHE	32	Ligand/Ion	RHENIUM (IV) HEXACHLORIDE

Sites (16, 16)

Asymmetric Unit (16, 16)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	PRO A:331 , HIS A:332 , ARG A:333 , GLU A:371 , PHE A:372 , MET A:462 , PHE A:494	BINDING SITE FOR RESIDUE RHE A 1
02	AC2	SOFTWARE	ALA A:335 , ASN A:339 , ASN A:356 , ARG A:357 , GLU A:360 , HIS A:390 , LEU A:392 , ASP A:393	BINDING SITE FOR RESIDUE RHE A 2
03	AC3	SOFTWARE	HOH A:34 , ASP A:225 , THR A:229 , HIS A:344 , GLU A:447 , SER A:449 , TRP A:450 , LEU A:451	BINDING SITE FOR RESIDUE RHE A 3
04	AC4	SOFTWARE	RHE A:5 , ASN A:356 , ARG A:386 , HIS A:390 , GLN A:396 , HOH A:515	BINDING SITE FOR RESIDUE RHE A 4
05	AC5	SOFTWARE	RHE A:4 , GLN A:396 , ALA A:399	BINDING SITE FOR RESIDUE RHE A 5
06	AC6	SOFTWARE	RHE A:16 , VAL A:366 , LYS A:379	BINDING SITE FOR RESIDUE RHE A 6
07	AC7	SOFTWARE	TYR A:245 , PHE A:477 , GLY A:482 , ALA A:483	BINDING SITE FOR RESIDUE RHE A 7
08	AC8	SOFTWARE	ASP A:352 , LYS A:353	BINDING SITE FOR RESIDUE RHE A 8
09	AC9	SOFTWARE	ALA A:282 , ASP A:283 , ALA A:470 , VAL A:501 , VAL A:502 , PRO A:503 , TYR A:504	BINDING SITE FOR RESIDUE RHE A 9
10	BC1	SOFTWARE	LEU A:300 , ALA A:301 , ASN A:304 , GLU A:490 , GLN A:495 , THR A:496	BINDING SITE FOR RESIDUE RHE A 10
11	BC2	SOFTWARE	LEU A:217 , ILE A:221 , ASN A:244 , ASP A:345 , HIS A:349 , ASN A:484	BINDING SITE FOR RESIDUE RHE A 11
12	BC3	SOFTWARE	GLU A:308 , TRP A:318 , GLN A:323 , SER A:497 , TYR A:500	BINDING SITE FOR RESIDUE RHE A 12
13	BC4	SOFTWARE	LYS A:423 , SER A:426 , ALA A:427	BINDING SITE FOR RESIDUE RHE A 13
14	BC5	SOFTWARE	ILE A:302	BINDING SITE FOR RESIDUE RHE A 14
15	BC6	SOFTWARE	GLU A:324	BINDING SITE FOR RESIDUE RHE A 15
16	BC7	SOFTWARE	RHE A:6 , SER A:359 , GLU A:360 , GLY A:363 , LYS A:379 , ASP A:393 , GLU A:394 , LYS A:395	BINDING SITE FOR RESIDUE RHE A 16

SS Bonds (1, 1)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:318
 aligned with CADC_ECOLI | P23890 from UniProtKB/Swiss-Prot  Length:512

    Alignment length:318
                                   201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501        
           CADC_ECOLI   192 ILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQTSVPYVVPYLDKFL 509
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeeeee........hhhhhhhhhhhhhhhhhhhhhhh..eeee...........eeeeeeeeeee........eeeeeeeee....eeeeeeee.....hhhhhhhhhhhhhhhhh....hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhh....hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3lya A 192 ILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQTSVPYVVPYLDKFL 509
                                   201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (9, 9)

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