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(-) Description

Title :  CRYSTAL STRUCTURE OF PUTATIVE AROMATIC AMINO ACID BETA-ELIMINATING LYASE/THREONINE ALDOLASE. (YP_001813866.1) FROM EXIGUOBACTERIUM SP. 255-15 AT 2.00 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  24 Feb 10  (Deposition) - 31 Mar 10  (Release) - 31 Mar 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Keywords :  Aromatic Amino Acid Beta-Eliminating Lyase/Threonine Aldolase, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Lyase, Pyridoxal Phosphate, Glycine Biosynthesis (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Aromatic Amino Acid Beta-Eliminating Lyase/Threonine Aldolase. (Yp_001813866. 1) From Exiguobacterium Sp. 255-15 At 2. 00 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - AROMATIC AMINO ACID BETA-ELIMINATING LYASE/THREONINE ALDOLASE
    ChainsA, B, C, D, E, F
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidSPEEDET
    Expression System StrainHK100
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneEXIG_1379
    Organism ScientificEXIGUOBACTERIUM SIBIRICUM
    Organism Taxid262543
    StrainDSM 17290 / JCM 13490 / 255-15

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit ABCDEF
Biological Unit 1 (1x)AB    
Biological Unit 2 (1x)  CD  
Biological Unit 3 (1x)    EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 51)

Asymmetric Unit (2, 51)
No.NameCountTypeFull Name
1LLP6Mod. Amino Acid2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
2MSE45Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 17)
No.NameCountTypeFull Name
1LLP2Mod. Amino Acid2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
2MSE15Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 17)
No.NameCountTypeFull Name
1LLP2Mod. Amino Acid2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
2MSE15Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (2, 17)
No.NameCountTypeFull Name
1LLP2Mod. Amino Acid2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
2MSE15Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3LWS)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3LWS)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Leu A:142 -Pro A:143
2Thr A:280 -Pro A:281
3Leu B:142 -Pro B:143
4Thr B:280 -Pro B:281
5Leu C:142 -Pro C:143
6Thr C:280 -Pro C:281
7Leu D:142 -Pro D:143
8Thr D:280 -Pro D:281
9Leu E:142 -Pro E:143
10Thr E:280 -Pro E:281
11Leu F:142 -Pro F:143
12Thr F:280 -Pro F:281

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3LWS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3LWS)

(-) Exons   (0, 0)

(no "Exon" information available for 3LWS)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:355
 aligned with B1YFH3_EXIS2 | B1YFH3 from UniProtKB/TrEMBL  Length:356

    Alignment length:355
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350     
         B1YFH3_EXIS2     1 MNRLRTSFQQTTGQISGHGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLGMDDAVFFPSGTMAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDGLKELHPIETILVGAADRLMTLDEIKALPDIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIAGLFDSIYISFYKGLGGIAGAILAGPAAFCQTARIWKRRYGGDLISLYPYIVSADYYYELRKDRMGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQAADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 355
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh..ee.......hhhhhhhhhh........ee..ee.hhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhhhhhh..eeee...hhhhhh..hhhhhhh..eeee........hhhhhhh.....eeeee..hhhhh....hhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhh.hhhhhhh...eeeee..........eeeeehhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh...eeee.......eeeeeee.hhhhhhhhhhhhhhhhhee.....ee...eeeeeee...hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lws A   1 mNRLRTSFQQTTGQISGHGKRNVGVLKTAFAAVADEmASDQYGTGAIIEPFEQKFADVLGmDDAVFFPSGTmAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDGLKELHPIETILVGAADRLmTLDEIKALPDIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEmLPYYEKTAAEIAGLFDSIYISFYkGLGGIAGAILAGPAAFCQTARIWKRRYGGDLISLYPYIVSADYYYELRKDRmGQYYEQAKQLAEQFNALPGVHTTPEVPVSNmFHLHFDGQAADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 355
                            |       10        20        30      | 40        50        60|       70 |      80        90       100       110       120   |   130       140       150       160       170       180|      190       200    |  210       220       230       240       250      |260       270       280       290       300       310       320       330       340       350     
                            |                                  37-MSE                  61-MSE     72-MSE                                             124-MSE                                                  181-MSE                 205-LLP                                             257-MSE                        288-MSE                                                               
                            1-MSE                                                                                                                                                                                                                                                                                                                                                              

Chain B from PDB  Type:PROTEIN  Length:354
 aligned with B1YFH3_EXIS2 | B1YFH3 from UniProtKB/TrEMBL  Length:356

    Alignment length:354
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351    
         B1YFH3_EXIS2     2 NRLRTSFQQTTGQISGHGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLGMDDAVFFPSGTMAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDGLKELHPIETILVGAADRLMTLDEIKALPDIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIAGLFDSIYISFYKGLGGIAGAILAGPAAFCQTARIWKRRYGGDLISLYPYIVSADYYYELRKDRMGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQAADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 355
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhh..ee........hhhhhhhhh........ee..ee.hhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhhhhhh..eeee...hhhhhh..hhhhhhh..eeee........hhhhhhh.....eeeee..hhhhh....hhhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhh.hhhhhhh...eeeee..........eeeeehhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh...eeee.......eeeeeee.hhhhhhhhhhhhhhhhhee.....ee...eeeeeee.hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3lws B   2 NRLRTSFQQTTGQISGHGKRNVGVLKTAFAAVADEmASDQYGTGAIIEPFEQKFADVLGmDDAVFFPSGTmAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDGLKELHPIETILVGAADRLmTLDEIKALPDIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEmLPYYEKTAAEIAGLFDSIYISFYkGLGGIAGAILAGPAAFCQTARIWKRRYGGDLISLYPYIVSADYYYELRKDRmGQYYEQAKQLAEQFNALPGVHTTPEVPVSNmFHLHFDGQAADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 355
                                    11        21        31     |  41        51        61        71|       81        91       101       111       121  |    131       141       151       161       171       181       191       201   |   211       221       231       241       251     | 261       271       281      |291       301       311       321       331       341       351    
                                                              37-MSE                  61-MSE     72-MSE                                             124-MSE                                                  181-MSE                 205-LLP                                             257-MSE                        288-MSE                                                               

Chain C from PDB  Type:PROTEIN  Length:356
 aligned with B1YFH3_EXIS2 | B1YFH3 from UniProtKB/TrEMBL  Length:356

    Alignment length:356
                             1                                                                                                                                                                                                                                                                                                                                                                  
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349      
         B1YFH3_EXIS2     - -MNRLRTSFQQTTGQISGHGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLGMDDAVFFPSGTMAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDGLKELHPIETILVGAADRLMTLDEIKALPDIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIAGLFDSIYISFYKGLGGIAGAILAGPAAFCQTARIWKRRYGGDLISLYPYIVSADYYYELRKDRMGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQAADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 355
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh..ee.......hhhhhhhhhh...............hhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhhhhhh..eeee...hhhhhh..hhhhhhh..eeee........hhhhhhh.....eeeee..hhhhh....hhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhh.hhhhhhh...eeeee..........eeeeehhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh...eeee.......eeeeeee.hhhhhhhhhhhhhhhhhee.....ee...eeeeeee.hhhhhh.hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lws C   0 GmNRLRTSFQQTTGQISGHGKRNVGVLKTAFAAVADEmASDQYGTGAIIEPFEQKFADVLGmDDAVFFPSGTmAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDGLKELHPIETILVGAADRLmTLDEIKALPDIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEmLPYYEKTAAEIAGLFDSIYISFYkGLGGIAGAILAGPAAFCQTARIWKRRYGGDLISLYPYIVSADYYYELRKDRmGQYYEQAKQLAEQFNALPGVHTTPEVPVSNmFHLHFDGQAADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 355
                             |       9        19        29       |39        49        59 |      69  |     79        89        99       109       119    |  129       139       149       159       169       179 |     189       199     | 209       219       229       239       249       259       269       279       289       299       309       319       329       339       349      
                             1-MSE                              37-MSE                  61-MSE     72-MSE                                             124-MSE                                                  181-MSE                 205-LLP                                             257-MSE                        288-MSE                                                               

Chain D from PDB  Type:PROTEIN  Length:354
 aligned with B1YFH3_EXIS2 | B1YFH3 from UniProtKB/TrEMBL  Length:356

    Alignment length:354
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351    
         B1YFH3_EXIS2     2 NRLRTSFQQTTGQISGHGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLGMDDAVFFPSGTMAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDGLKELHPIETILVGAADRLMTLDEIKALPDIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIAGLFDSIYISFYKGLGGIAGAILAGPAAFCQTARIWKRRYGGDLISLYPYIVSADYYYELRKDRMGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQAADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 355
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhh..ee........hhhhhhhhh........ee..ee.hhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhhhhhh..eeee...hhhhhh..hhhhhhh..eeee........hhhhhhh.....eeeee...........hhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhh.hhhhhhh...eeeee..........eeeeehhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh...eeee.......eeeeeee.hhhhhhhhhhhhhhhhhee.....ee...eeeeeee.hhhhhh...hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3lws D   2 NRLRTSFQQTTGQISGHGKRNVGVLKTAFAAVADEmASDQYGTGAIIEPFEQKFADVLGmDDAVFFPSGTmAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDGLKELHPIETILVGAADRLmTLDEIKALPDIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEmLPYYEKTAAEIAGLFDSIYISFYkGLGGIAGAILAGPAAFCQTARIWKRRYGGDLISLYPYIVSADYYYELRKDRmGQYYEQAKQLAEQFNALPGVHTTPEVPVSNmFHLHFDGQAADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 355
                                    11        21        31     |  41        51        61        71|       81        91       101       111       121  |    131       141       151       161       171       181       191       201   |   211       221       231       241       251     | 261       271       281      |291       301       311       321       331       341       351    
                                                              37-MSE                  61-MSE     72-MSE                                             124-MSE                                                  181-MSE                 205-LLP                                             257-MSE                        288-MSE                                                               

Chain E from PDB  Type:PROTEIN  Length:354
 aligned with B1YFH3_EXIS2 | B1YFH3 from UniProtKB/TrEMBL  Length:356

    Alignment length:354
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351    
         B1YFH3_EXIS2     2 NRLRTSFQQTTGQISGHGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLGMDDAVFFPSGTMAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDGLKELHPIETILVGAADRLMTLDEIKALPDIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIAGLFDSIYISFYKGLGGIAGAILAGPAAFCQTARIWKRRYGGDLISLYPYIVSADYYYELRKDRMGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQAADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 355
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhh..ee.......hhhhhhhhhh........ee..ee.hhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhhhhh...eeee...hhhhhh..hhhhhhh..eeee........hhhhhhh.....eeeee..hhhhh....hhhhhhhhhhhhhhhh.eeeeee..hhhhhhhhh.hhhhhhh...eeeee..........eeeeehhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh...eeee.......eeeeeee.hhhhhhhhhhhhhhhhhee.....ee...eeeeeee.hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3lws E   2 NRLRTSFQQTTGQISGHGKRNVGVLKTAFAAVADEmASDQYGTGAIIEPFEQKFADVLGmDDAVFFPSGTmAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDGLKELHPIETILVGAADRLmTLDEIKALPDIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEmLPYYEKTAAEIAGLFDSIYISFYkGLGGIAGAILAGPAAFCQTARIWKRRYGGDLISLYPYIVSADYYYELRKDRmGQYYEQAKQLAEQFNALPGVHTTPEVPVSNmFHLHFDGQAADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 355
                                    11        21        31     |  41        51        61        71|       81        91       101       111       121  |    131       141       151       161       171       181       191       201   |   211       221       231       241       251     | 261       271       281      |291       301       311       321       331       341       351    
                                                              37-MSE                  61-MSE     72-MSE                                             124-MSE                                                  181-MSE                 205-LLP                                             257-MSE                        288-MSE                                                               

Chain F from PDB  Type:PROTEIN  Length:357
 aligned with B1YFH3_EXIS2 | B1YFH3 from UniProtKB/TrEMBL  Length:356

    Alignment length:357
                             1                                                                                                                                                                                                                                                                                                                                                                   
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       
         B1YFH3_EXIS2     - -MNRLRTSFQQTTGQISGHGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLGMDDAVFFPSGTMAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDGLKELHPIETILVGAADRLMTLDEIKALPDIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIAGLFDSIYISFYKGLGGIAGAILAGPAAFCQTARIWKRRYGGDLISLYPYIVSADYYYELRKDRMGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQAADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAFS 356
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --------------------------Beta_elim_lyase-3lwsF01 F:26-294                                                                                                                                                                                                                                             -------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) --------------------------Beta_elim_lyase-3lwsF02 F:26-294                                                                                                                                                                                                                                             -------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) --------------------------Beta_elim_lyase-3lwsF03 F:26-294                                                                                                                                                                                                                                             -------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) --------------------------Beta_elim_lyase-3lwsF04 F:26-294                                                                                                                                                                                                                                             -------------------------------------------------------------- Pfam domains (4)
           Pfam domains (5) --------------------------Beta_elim_lyase-3lwsF05 F:26-294                                                                                                                                                                                                                                             -------------------------------------------------------------- Pfam domains (5)
           Pfam domains (6) --------------------------Beta_elim_lyase-3lwsF06 F:26-294                                                                                                                                                                                                                                             -------------------------------------------------------------- Pfam domains (6)
         Sec.struct. author ..hhhhhhhhh..ee.......hhhhhhhhhh........ee..ee.hhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhhh..eeee...hhhhhh..hhhhhhh..eeee........hhhhhhhh....eeeee..hhhhh....hhhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhh.hhhhhhh...eeeee..........eeeeehhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..eeee.......eeeeeee.hhhhhhhhhhhhhhhhhee.....ee...eeeeeee.hhhhhh.hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lws F   0 GmNRLRTSFQQTTGQISGHGKRNVGVLKTAFAAVADEmASDQYGTGAIIEPFEQKFADVLGmDDAVFFPSGTmAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDGLKELHPIETILVGAADRLmTLDEIKALPDIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEmLPYYEKTAAEIAGLFDSIYISFYkGLGGIAGAILAGPAAFCQTARIWKRRYGGDLISLYPYIVSADYYYELRKDRmGQYYEQAKQLAEQFNALPGVHTTPEVPVSNmFHLHFDGQAADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAFS 356
                             |       9        19        29       |39        49        59 |      69  |     79        89        99       109       119    |  129       139       149       159       169       179 |     189       199     | 209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       
                             1-MSE                              37-MSE                  61-MSE     72-MSE                                             124-MSE                                                  181-MSE                 205-LLP                                             257-MSE                        288-MSE                                                                

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3LWS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3LWS)

(-) Pfam Domains  (1, 6)

Asymmetric Unit

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (B1YFH3_EXIS2 | B1YFH3)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
biological process
    GO:0006520    cellular amino acid metabolic process    The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
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