3LVV - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   BSO-INHIBITED SCGCL

Authors :   J. J. Barycki, E. I. Biterova

Date :   22 Feb 10 (Deposition) - 16 Mar 10 (Release) - 26 May 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym./Biol. Unit : A

Keywords :   Ligase, Glutathione, Atp-Grasp, Atp-Binding, Glutathione Biosynthesis, Nucleotide-Binding, Phosphoprotein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. I. Biterova, J. J. Barycki
Structural Basis For Feedback And Pharmacological Inhibition Of Saccharomyces Cerevisiae Glutamate Cysteine Ligase.
J. Biol. Chem. V. 285 14459 2010
PubMed-ID: 20220146 | Reference-DOI: 10.1074/JBC.M110.104802

Molecule 1 - GLUTAMATE--CYSTEINE LIGASE
	Chains	:	A
	EC Number	:	6.3.2.2
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	ROSETTA 2(DE3)PLYSS
	Expression System Taxid	:	562
	Expression System Vector Type	:	PET24
	Gene	:	GSH1, J0832, YJL101C
	Organism Common	:	BREWER'S YEAST,LAGER BEER YEAST,YEAST
	Organism Scientific	:	SACCHAROMYCES CEREVISIAE
	Organism Taxid	:	4932
	Synonym	:	GAMMA-GLUTAMYLCYSTEINE SYNTHETASE, GAMMA-ECS, GCS

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (4, 6)

No.	Name	Count	Type	Full Name
1	ADP	1	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	LBP	1	Ligand/Ion	(2S)-2-AMINO-4-(S-BUTYL-N-PHOSPHONOSULFONIMIDOYL)BUTANOIC ACID
3	MG	3	Ligand/Ion	MAGNESIUM ION
4	PGE	1	Ligand/Ion	TRIETHYLENE GLYCOL

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLU A:50 , GLU A:52 , GLU A:96 , GLU A:103 , MET A:262 , CYS A:264 , SER A:265 , CYS A:266 , GLN A:268 , ARG A:313 , ILE A:317 , TYR A:362 , TRP A:445 , GLU A:470 , ARG A:472 , ADP A:694 , MG A:695 , MG A:696 , MG A:697 , HOH A:718 , HOH A:723 , HOH A:824 , HOH A:844 , HOH A:862 , HOH A:869	BINDING SITE FOR RESIDUE LBP A 693
2	AC2	SOFTWARE	PHE A:46 , GLY A:48 , ASP A:49 , GLU A:50 , HIS A:94 , GLU A:103 , THR A:270 , GLN A:272 , ARG A:468 , GLU A:470 , LBP A:693 , MG A:696 , MG A:697 , HOH A:740 , HOH A:753 , HOH A:777 , HOH A:824 , HOH A:920 , HOH A:958	BINDING SITE FOR RESIDUE ADP A 694
3	AC3	SOFTWARE	GLU A:52 , GLU A:96 , GLU A:103 , LBP A:693 , HOH A:844	BINDING SITE FOR RESIDUE MG A 695
4	AC4	SOFTWARE	GLU A:50 , GLN A:268 , GLU A:470 , LBP A:693 , ADP A:694	BINDING SITE FOR RESIDUE MG A 696
5	AC5	SOFTWARE	GLU A:50 , GLU A:103 , LBP A:693 , ADP A:694 , HOH A:824	BINDING SITE FOR RESIDUE MG A 697
6	AC6	SOFTWARE	GLY A:163 , CYS A:164 , PRO A:165 , ASP A:166 , PRO A:173 , TRP A:174 , PHE A:185 , HOH A:848	BINDING SITE FOR RESIDUE PGE A 698

(no "SS Bond" information available for 3LVV)

Asymmetric/Biological Unit

No.	Residues
1	Leu A:238	-	Pro A:239

(no "SAP(SNP)/Variant" information available for 3LVV)

(no "PROSITE Motif" information available for 3LVV)

(no "Exon" information available for 3LVV)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:672
 aligned with GSH1_YEAST | P32477 from UniProtKB/Swiss-Prot  Length:678

    Alignment length:672
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671  
           GSH1_YEAST     2 GLLALGTPLQWFESRTYNEHIRDEGIEQLLYIFQAAGKRDNDPLFWGDELEYMVVDFDDKERNSMLDVCHDKILTELNMEDSSLCEANDVSFHPEYGRYMLEATPASPYLNYVGSYVEVNMQKRRAIAEYKLSEYARQDSKNNLHVGSRSVPLTLTVFPRMGCPDFINIKDPWNHKNAASRSLFLPDEVINRHVRFPNLTASIRTRRGEKVCMNVPMYKDIATPETDDSIYDRDWFLPEDKEAKLASKPGFIYMDSMGFGMGCSCLQVTFQAPNINKARYLYDALVNFAPIMLAFSAAAPAFKGWLADQDVRWNVISGAVDDRTPKERGVAPLLPKYNKNGFGGIAKDVQDKVLEIPKSRYSSVDLFLGGSKFFNRTYNDTNVPINEKVLGRLLENDKAPLDYDLAKHFAHLYIRDPVSTFEELLNQDNKTSSNHFENIQSTNWQTLRFKPPTQQATPDKKDSPGWRVEFRPFEVQLLDFENAAYSVLIYLIVDSILTFSDNINAYIHMSKVWENMKIAHHRDAILFEKFHWKKSFRNDTDVETEDYSISEIFHNPENGIFPQFVTPILCQKGFVTKDWKELKHSSKHERLYYYLKLISDRASGELPTTAKFFRNFVLQHPDYKHDSKISKSINYDLLSTCDRLTHLDDSKGELTSFLGAEIAEYVKKNKPS 673
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCS-3lvvA01 A:253-647                                                                                                                                                                                                                                                                                                                                                                                      -------------------------- Pfam domains
         Sec.struct. author .........hhhhhh.hhhhhhhhhhhhhhhhhhhhh.......eeeeeeeeeeeeee....eeee.....hhhhhhh..hhhhhhhh.eeee......eeeeee...ee....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeee................................hhhhh...hhhhhhhhhhhhhhh....eeee.....................hhhhhhhhhh...eeee.hhhhh.....eeeeee..hhhhhhhhhhhhhhhhhhhhhhhh...ee..ee.....hhhhhhhhh...hhhhhh........hhhhh...hhhhhhhh.....................hhhhh......hhhhhhhhhh......hhhhhhhhhhhh.......hhhhhh......hhhhhhhhh.....eeee................eeee.......hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhh...hhhhhheeeee..........eeeeehhhhhhh...hhhhhhhhhhhhhh.....hhhhhhhh..hhhhhhhhhhhhhhhh....hhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3lvv A   2 GLLALGTPLQWFESRTYNEHIRDEGIEQLLYIFQAAGKRDNDPLFWGDELEYMVVDFDDKERNSMLDVCHDKILTELNMEDSSLCEANDVSFHPEYGRYMLEATPASPYLNYVGSYVEVNMQKRRAIAEYKLSEYARQDSKNNLHVGSRSVPLTLTVFPRMGCPDFINIKDPWNHKNAASRSLFLPDEVINRHVRFPNLTASIRTRRGEKVCMNVPMYKDIATPETDDSIYDRDWFLPEDKEAKLASKPGFIYMDSMGFGMGCSCLQVTFQAPNINKARYLYDALVNFAPIMLAFSAAAPAFKGWLADQDVRWNVISGAVDDRTPKERGVAPLLPKYNKNGFGGIAKDVQDKVLEIPKSRYSSVDLFLGGSKFFNRTYNDTNVPINEKVLGRLLENDKAPLDYDLAKHFAHLYIRDPVSTFEELLNQDNKTSSNHFENIQSTNWQTLRFKPPTQQATPDKKDSPGWRVEFRPFEVQLLDFENAAYSVLIYLIVDSILTFSDNINAYIHMSKVWENMKIAHHRDAILFEKFHWKKSFRNDTDVETEDYSISEIFHNPENGIFPQFVTPILCQKGFVTKDWKELKHSSKHERLYYYLKLISDRASGELPTTAKFFRNFVLQHPDYKHDSKISKSINYDLLSTCDRLTHLDDSKGELTSFLGAEIAEYVKKNKPS 673
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3LVV)

(no "CATH Domain" information available for 3LVV)

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: GCS (23)

Family: GCS (2)

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast) (2)

GCS-3lvvA01

A:253-647

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (GSH1_YEAST | P32477)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0004357	glutamate-cysteine ligase activity	Catalysis of the reaction: L-cysteine + L-glutamate + ATP = L-gamma-glutamyl-L-cysteine + ADP + 2 H(+) + phosphate.
	GO:0016874	ligase activity	Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
	GO:0006750	glutathione biosynthetic process	The chemical reactions and pathways resulting in the formation of glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins.
	GO:0046686	response to cadmium ion	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus.
	GO:0042542	response to hydrogen peroxide	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0017109	glutamate-cysteine ligase complex	An enzyme complex that catalyzes the ligation of glutamate to cysteine, forming glutamylcysteine.
	GO:0005622	intracellular	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Leu A:238 - Pro A:239	[ RasMol ]

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	3lvv
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	GSH1_YEAST \| P32477
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	6.3.2.2
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UniProtKB/Swiss-Prot
	GSH1_YEAST \| P32477	:	3ig5 3ig8 3lvw

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 6)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

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Pfam Domains (1, 1)

Gene Ontology (10, 10)

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