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(-) Description

Title :  CRYSTAL STRUCTURE OF GLUTATHIONE S-TRANSFERASE FROM RHODOBACTER SPHAEROIDES
 
Authors :  S. Eswaramoorthy, S. K. Burley, S. Swaminathan, New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date :  14 Feb 10  (Deposition) - 23 Mar 10  (Release) - 23 Mar 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Xenobiotic, Biodegradative Metabolism, Psi2, Nysgxrc, Transferase, Structural Genomics, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Eswaramoorthy, S. K. Burley, S. Swaminathan
Crystal Structure Of Glutathione S-Transferase From Rhodobacter Sphaeroides
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GLUTATHIONE S-TRANSFERASE
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: CODON+RIL - STRATAGENE
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: RHOS4_23800, RSP_0769
    Organism Scientific: RHODOBACTER SPHAEROIDES
    Organism Taxid: 272943
    Strain: ATCC 17023, 2.4.1

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 22)

Asymmetric/Biological Unit (4, 22)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2GSH4Ligand/IonGLUTATHIONE
3MSE12Mod. Amino AcidSELENOMETHIONINE
4TRS4Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:11 , THR A:49 , GLY A:61 , GLN A:62 , ILE A:63 , GLU A:75 , SER A:76 , HOH A:246 , HOH A:247 , HOH A:262 , HOH A:270 , THR C:111 , ARG C:147BINDING SITE FOR RESIDUE GSH A 300
02AC2SOFTWAREILE A:72 , LEU A:73 , THR A:74 , SER C:104 , TRP C:105 , ARG C:151BINDING SITE FOR RESIDUE TRS A 301
03AC3SOFTWAREARG B:11 , THR B:49 , GLY B:61 , GLN B:62 , ILE B:63 , GLU B:75 , SER B:76 , HOH B:227 , HOH B:259 , HOH B:268 , HOH B:296 , HOH B:321 , HOH B:365 , THR D:111 , HOH D:290BINDING SITE FOR RESIDUE GSH B 300
04AC4SOFTWAREILE B:72 , LEU B:73 , THR B:74 , LEU D:101 , SER D:104 , TRP D:105 , ARG D:151BINDING SITE FOR RESIDUE TRS B 301
05AC5SOFTWARESER B:10 , ARG B:11 , SER B:13 , ARG B:14 , GLU B:176 , ARG B:179 , TYR B:180BINDING SITE FOR RESIDUE GOL B 302
06AC6SOFTWARETHR A:111 , ARG A:147 , ARG C:11 , THR C:49 , GLY C:61 , GLN C:62 , ILE C:63 , GLU C:75 , SER C:76 , HOH C:225 , HOH C:265 , HOH C:331 , HOH C:353BINDING SITE FOR RESIDUE GSH C 300
07AC7SOFTWARELEU A:101 , SER A:104 , TRP A:105 , HOH A:253 , ILE C:72 , LEU C:73 , THR C:74BINDING SITE FOR RESIDUE TRS C 301
08AC8SOFTWARETHR B:111 , ARG B:147 , ARG D:11 , THR D:49 , GLY D:61 , GLN D:62 , ILE D:63 , PRO D:64 , GLU D:75 , SER D:76 , HOH D:226 , HOH D:231 , HOH D:233 , HOH D:238 , HOH D:271 , HOH D:412BINDING SITE FOR RESIDUE GSH D 300
09AC9SOFTWARELEU B:101 , SER B:104 , TRP B:105 , ILE D:72 , LEU D:73 , THR D:74BINDING SITE FOR RESIDUE TRS D 301
10BC1SOFTWARESER D:10 , ARG D:11 , SER D:13 , ARG D:14 , GLU D:176 , ARG D:179 , TYR D:180BINDING SITE FOR RESIDUE GOL D 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3LSZ)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Ile A:63 -Pro A:64
2Ile B:63 -Pro B:64
3Ile C:63 -Pro C:64
4Ile D:63 -Pro D:64

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3LSZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3LSZ)

(-) Exons   (0, 0)

(no "Exon" information available for 3LSZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:223
 aligned with Q3IZT6_RHOS4 | Q3IZT6 from UniProtKB/TrEMBL  Length:219

    Alignment length:223
                                                                                                                                                                                                                                                    219    
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210        |-   
         Q3IZT6_RHOS4     1 MLKIYGVYRSRASRPLWLLAELDLPFEHVPVIQANRVAHPHGPEAPLNTASAAYLAVNPLGQIPCLEEEGLILTESLAITLHIARTQGGQLGPRSEPEDALMVSWSLFAATAVEPPALEIQLIQRSGGGTSPEGQAAIAIAAERLRRPLARLERHFAAEDYLVGGRFTVADLNLAETLRYGQAHPALLEPFPAVAAWLDRCQSRPAFRLMMERRAAEPE----   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee......hhhhhhhhhhhh...eee...hhhhh.............hhhhhh........eeee..eeeehhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lsz A   1 SLKIYGVYRSRASRPLWLLAELDLPFEHVPVIQANRVAHPHGPEAPLNTASAAYLAVNPLGQIPCLEEEGLILTESLAITLHIARTQGGQLGPRSEPEDALmVSWSLFAATAVEPPALEIQLIQRSGGGTSPEGQAAIAIAAERLRRPLARLERHFAAEDYLVGGRFTVADLNLAETLRYGQAHPALLEPFPAVAAWLDRCQSRPAFRLmmERRAAEGHHHHH 223
                                    10        20        30        40        50        60        70        80        90       100 |     110       120       130       140       150       160       170       180       190       200       210|      220   
                                                                                                                               102-MSE                                                                                                     210-MSE         
                                                                                                                                                                                                                                            211-MSE        


Chain B from PDB  Type:PROTEIN  Length:220
 aligned with Q3IZT6_RHOS4 | Q3IZT6 from UniProtKB/TrEMBL  Length:219

    Alignment length:220
                                                                                                                                                                                                                                                   219  
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       | -
         Q3IZT6_RHOS4     2 LKIYGVYRSRASRPLWLLAELDLPFEHVPVIQANRVAHPHGPEAPLNTASAAYLAVNPLGQIPCLEEEGLILTESLAITLHIARTQGGQLGPRSEPEDALMVSWSLFAATAVEPPALEIQLIQRSGGGTSPEGQAAIAIAAERLRRPLARLERHFAAEDYLVGGRFTVADLNLAETLRYGQAHPALLEPFPAVAAWLDRCQSRPAFRLMMERRAAEPE--   -
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee......hhhhhhhhhhh....eee...hhhhh.............hhhhhh........eeee..eeeehhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh...hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lsz B   2 LKIYGVYRSRASRPLWLLAELDLPFEHVPVIQANRVAHPHGPEAPLNTASAAYLAVNPLGQIPCLEEEGLILTESLAITLHIARTQGGQLGPRSEPEDALmVSWSLFAATAVEPPALEIQLIQRSGGGTSPEGQAAIAIAAERLRRPLARLERHFAAEDYLVGGRFTVADLNLAETLRYGQAHPALLEPFPAVAAWLDRCQSRPAFRLmmERRAAEGHHH 221
                                    11        21        31        41        51        61        71        81        91       101|      111       121       131       141       151       161       171       181       191       201       211       221
                                                                                                                              102-MSE                                                                                                     210-MSE       
                                                                                                                                                                                                                                           211-MSE      


Chain C from PDB  Type:PROTEIN  Length:217
 aligned with Q3IZT6_RHOS4 | Q3IZT6 from UniProtKB/TrEMBL  Length:219

    Alignment length:217
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       
         Q3IZT6_RHOS4     1 MLKIYGVYRSRASRPLWLLAELDLPFEHVPVIQANRVAHPHGPEAPLNTASAAYLAVNPLGQIPCLEEEGLILTESLAITLHIARTQGGQLGPRSEPEDALMVSWSLFAATAVEPPALEIQLIQRSGGGTSPEGQAAIAIAAERLRRPLARLERHFAAEDYLVGGRFTVADLNLAETLRYGQAHPALLEPFPAVAAWLDRCQSRPAFRLMMERRAAE 217
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee......hhhhhhhhhhhh...eee...hhhhh.............hhhhhh........eeee..eeeehhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhh...hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lsz C   1 SLKIYGVYRSRASRPLWLLAELDLPFEHVPVIQANRVAHPHGPEAPLNTASAAYLAVNPLGQIPCLEEEGLILTESLAITLHIARTQGGQLGPRSEPEDALmVSWSLFAATAVEPPALEIQLIQRSGGGTSPEGQAAIAIAAERLRRPLARLERHFAAEDYLVGGRFTVADLNLAETLRYGQAHPALLEPFPAVAAWLDRCQSRPAFRLmmERRAAE 217
                                    10        20        30        40        50        60        70        80        90       100 |     110       120       130       140       150       160       170       180       190       200       210|      
                                                                                                                               102-MSE                                                                                                     210-MSE   
                                                                                                                                                                                                                                            211-MSE  


Chain D from PDB  Type:PROTEIN  Length:214
 aligned with Q3IZT6_RHOS4 | Q3IZT6 from UniProtKB/TrEMBL  Length:219

    Alignment length:216
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211      
         Q3IZT6_RHOS4     2 LKIYGVYRSRASRPLWLLAELDLPFEHVPVIQANRVAHPHGPEAPLNTASAAYLAVNPLGQIPCLEEEGLILTESLAITLHIARTQGGQLGPRSEPEDALMVSWSLFAATAVEPPALEIQLIQRSGGGTSPEGQAAIAIAAERLRRPLARLERHFAAEDYLVGGRFTVADLNLAETLRYGQAHPALLEPFPAVAAWLDRCQSRPAFRLMMERRAAE 217
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) --GST_N_3-3lszD05 D:4-94                                                                     -----GST_C-3lszD01 D:100-205                                                                                   ------------ Pfam domains (1)
           Pfam domains (2) --GST_N_3-3lszD06 D:4-94                                                                     -----GST_C-3lszD02 D:100-205                                                                                   ------------ Pfam domains (2)
           Pfam domains (3) --GST_N_3-3lszD07 D:4-94                                                                     -----GST_C-3lszD03 D:100-205                                                                                   ------------ Pfam domains (3)
           Pfam domains (4) --GST_N_3-3lszD08 D:4-94                                                                     -----GST_C-3lszD04 D:100-205                                                                                   ------------ Pfam domains (4)
         Sec.struct. author .eee......hhhhhhhhhhhh...eee...hhhhh....--.......hhhhhh........eee....eeehhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3lsz D   2 LKIYGVYRSRASRPLWLLAELDLPFEHVPVIQANRVAHPH--EAPLNTASAAYLAVNPLGQIPCLEEEGLILTESLAITLHIARTQGGQLGPRSEPEDALmVSWSLFAATAVEPPALEIQLIQRSGGGTSPEGQAAIAIAAERLRRPLARLERHFAAEDYLVGGRFTVADLNLAETLRYGQAHPALLEPFPAVAAWLDRCQSRPAFRLmmERRAAE 217
                                    11        21        31        41  |     51        61        71        81        91       101|      111       121       131       141       151       161       171       181       191       201       211      
                                                                  41 44                                                       102-MSE                                                                                                     210-MSE   
                                                                                                                                                                                                                                           211-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3LSZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3LSZ)

(-) Pfam Domains  (2, 8)

Asymmetric/Biological Unit
(-)
Clan: GST_C (118)
(-)
Clan: Thioredoxin (367)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (Q3IZT6_RHOS4 | Q3IZT6)
molecular function
    GO:0004364    glutathione transferase activity    Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.

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