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Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   STRUCTURE OF ALFA-GALACTOSIDASE FROM SACCHAROMYCES CEREVISIAE WITH RAFFINOSE

Authors :   R. Fernandez-Leiro, A. Pereira-Rodriguez, M. E. Cerdan, M. Becerra, J Aparicio

Date :   11 Feb 10 (Deposition) - 30 Jun 10 (Release) - 26 Jan 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.70

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Alpha-Galactosidase, Tetramer, Gh27, Raffinose, Glycoprotein, Glycosidase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. Fernandez-Leiro, A. Pereira-Rodriguez, M. E. Cerdan, M. Becerra, J. Sanz-Aparicio
Structural Analysis Of Saccharomyces Cerevisiae Alpha-Galactosidase And Its Complexes With Natural Substrates Reveals New Insights Into Substrate Specificity Of Gh27 Glycosidases.
J. Biol. Chem. V. 285 28020 2010
PubMed-ID: 20592022 | Reference-DOI: 10.1074/JBC.M110.144584

Molecule 1 - ALPHA-GALACTOSIDASE 1
	Chains	:	A, B, C, D
	EC Number	:	3.2.1.22
	Engineered	:	YES
	Expression System	:	SACCHAROMYCES CEREVISIAE
	Expression System Plasmid	:	YEPFLAG1
	Expression System Taxid	:	4932
	Expression System Vector Type	:	PLASMID
	Gene	:	MEL1
	Mutation	:	YES
	Organism Common	:	BREWER'S YEAST,LAGER BEER YEAST,YEAST
	Organism Scientific	:	SACCHAROMYCES CEREVISIAE
	Organism Taxid	:	4932
	Synonym	:	ALPHA-D-GALACTOSIDE GALACTOHYDROLASE 1, MELIBIASE 1

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (3, 29)

No.	Name	Count	Type	Full Name
1	GLA	4	Ligand/Ion	ALPHA D-GALACTOSE
2	NAG	21	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
3	SUC	4	Ligand/Ion	SUCROSE

Asymmetric Unit (29, 29)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASN A:175 , GLY A:178 , ARG A:179 , PRO A:180 , HOH A:504 , HOH A:558 , HOH A:1094 , HOH A:1460	BINDING SITE FOR RESIDUE NAG A 2001
02	AC2	SOFTWARE	GLY A:267 , GLY A:269 , ASN A:270 , NAG A:3002 , ASN B:381 , LEU B:382	BINDING SITE FOR RESIDUE NAG A 3001
03	AC3	SOFTWARE	ASN A:298 , HOH A:557 , HOH A:563 , HOH A:1414 , HOH A:1452 , HOH A:1533 , NAG A:3001	BINDING SITE FOR RESIDUE NAG A 3002
04	AC4	SOFTWARE	ASP A:273 , SER A:302 , ASN A:403 , HOH A:533	BINDING SITE FOR RESIDUE NAG A 4001
05	AC5	SOFTWARE	ASP A:63 , THR A:417 , ASN A:422 , GLU A:425 , NAG A:5002	BINDING SITE FOR RESIDUE NAG A 5001
06	AC6	SOFTWARE	HOH A:530 , HOH A:1415 , NAG A:5001	BINDING SITE FOR RESIDUE NAG A 5002
07	AC7	SOFTWARE	TRP A:37 , CYS A:121 , TRP A:188 , ASP A:209 , HOH A:548 , HOH A:1361 , HOH A:1481 , GLA A:9002 , VAL B:19 , GLN B:251 , HOH B:551	BINDING SITE FOR RESIDUE SUC A 9001
08	AC8	SOFTWARE	TRP A:37 , ASP A:72 , ASP A:73 , TYR A:113 , CYS A:121 , LYS A:147 , CYS A:186 , TRP A:188 , ARG A:205 , ASP A:209 , HOH A:1299 , SUC A:9001	BINDING SITE FOR RESIDUE GLA A 9002
09	AC9	SOFTWARE	ASN B:175 , GLY B:178 , ARG B:179 , HOH B:541 , HOH B:1158	BINDING SITE FOR RESIDUE NAG B 2001
10	BC1	SOFTWARE	GLY B:269 , ASN B:270 , HOH B:1060 , HOH B:1680 , NAG B:3002 , LEU C:382	BINDING SITE FOR RESIDUE NAG B 3001
11	BC2	SOFTWARE	ASN B:298 , NAG B:3001	BINDING SITE FOR RESIDUE NAG B 3002
12	BC3	SOFTWARE	SER B:302 , ASN B:403 , HOH B:492 , HOH B:1302	BINDING SITE FOR RESIDUE NAG B 4001
13	BC4	SOFTWARE	ASP B:63 , THR B:417 , ASN B:422 , GLU B:425 , HOH B:1195 , HOH B:1388 , NAG B:5002	BINDING SITE FOR RESIDUE NAG B 5001
14	BC5	SOFTWARE	HOH B:1388 , NAG B:5001	BINDING SITE FOR RESIDUE NAG B 5002
15	BC6	SOFTWARE	TRP B:37 , CYS B:121 , ASP B:209 , GLY B:234 , PHE B:235 , HOH B:1232 , HOH B:1497 , GLA B:9002 , VAL C:19 , GLN C:251	BINDING SITE FOR RESIDUE SUC B 9001
16	BC7	SOFTWARE	TRP B:37 , ASP B:72 , ASP B:73 , TYR B:113 , CYS B:121 , LYS B:147 , CYS B:186 , ARG B:205 , ASP B:209 , SUC B:9001	BINDING SITE FOR RESIDUE GLA B 9002
17	BC8	SOFTWARE	GLU A:89 , ASN C:175 , GLY C:178 , ARG C:179 , HOH C:1374	BINDING SITE FOR RESIDUE NAG C 2001
18	BC9	SOFTWARE	GLY C:267 , GLY C:269 , ASN C:270 , HOH C:1137 , NAG C:3002 , LEU D:382	BINDING SITE FOR RESIDUE NAG C 3001
19	CC1	SOFTWARE	ASN C:298 , HOH C:1197 , NAG C:3001	BINDING SITE FOR RESIDUE NAG C 3002
20	CC2	SOFTWARE	PRO A:368 , SER C:302 , ASN C:403 , HOH C:1156 , HOH C:1617	BINDING SITE FOR RESIDUE NAG C 4001
21	CC3	SOFTWARE	ASP C:63 , THR C:417 , ASN C:422 , HOH C:1209	BINDING SITE FOR RESIDUE NAG C 5001
22	CC4	SOFTWARE	TRP C:37 , CYS C:121 , TRP C:188 , ASP C:209 , GLY C:234 , PHE C:235 , HOH C:499 , HOH C:540 , GLA C:9002 , VAL D:19 , GLN D:251	BINDING SITE FOR RESIDUE SUC C 9001
23	CC5	SOFTWARE	TRP C:37 , ASP C:72 , ASP C:73 , TYR C:113 , CYS C:121 , LYS C:147 , CYS C:186 , TRP C:188 , ARG C:205 , ASP C:209 , HOH C:1411 , HOH C:1493 , SUC C:9001	BINDING SITE FOR RESIDUE GLA C 9002
24	CC6	SOFTWARE	ASN D:175 , GLY D:178 , ARG D:179 , PRO D:180 , HOH D:494 , HOH D:1444 , HOH D:1538	BINDING SITE FOR RESIDUE NAG D 2001
25	CC7	SOFTWARE	GLU D:132 , ASP D:273 , SER D:302 , ASN D:403 , HOH D:1099 , HOH D:1237 , HOH D:1250	BINDING SITE FOR RESIDUE NAG D 4001
26	CC8	SOFTWARE	ASP D:63 , THR D:417 , ASN D:422 , GLU D:425 , HOH D:1544 , NAG D:5002	BINDING SITE FOR RESIDUE NAG D 5001
27	CC9	SOFTWARE	THR D:424 , HOH D:535 , HOH D:1485 , HOH D:1544 , NAG D:5001	BINDING SITE FOR RESIDUE NAG D 5002
28	DC1	SOFTWARE	GLN A:251 , TRP D:37 , CYS D:121 , TRP D:188 , ASP D:209 , GLY D:234 , PHE D:235 , HOH D:541 , HOH D:1489 , GLA D:9002	BINDING SITE FOR RESIDUE SUC D 9001
29	DC2	SOFTWARE	TRP D:37 , ASP D:72 , ASP D:73 , TYR D:113 , CYS D:121 , LYS D:147 , CYS D:186 , TRP D:188 , ARG D:205 , ASP D:209 , SUC D:9001	BINDING SITE FOR RESIDUE GLA D 9002

Asymmetric/Biological Unit

No.	Residues
1	A:42	-	A:74
2	A:121	-	A:151
3	A:221	-	A:237
4	A:223	-	A:230
5	B:42	-	B:74
6	B:121	-	B:151
7	B:221	-	B:237
8	B:223	-	B:230
9	C:42	-	C:74
10	C:121	-	C:151
11	C:221	-	C:237
12	C:223	-	C:230
13	D:42	-	D:74
14	D:121	-	D:151
15	D:221	-	D:237
16	D:223	-	D:230

(no "Cis Peptide Bond" information available for 3LRM)

(no "SAP(SNP)/Variant" information available for 3LRM)

Asymmetric/Biological Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ALPHA_GALACTOSIDASE	PS00512	Alpha-galactosidase signature.	MEL1_YEASX	65-80	4	A:65-80 B:65-80 C:65-80 D:65-80

(no "Exon" information available for 3LRM)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:452
 aligned with MEL1_YEASX | P04824 from UniProtKB/Swiss-Prot  Length:471

    Alignment length:452
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468  
           MEL1_YEASX    19 VSPSYNGLGLTPQMGWDNWNTFACDVSEQLLLDTADRISDLGLKDMGYKYIILDDCWSSGRDSDGFLVADEQKFPNGMGHVADHLHNNSFLFGMYSSAGEYTCAGYPGSLGREEEDAQFFANNRVDYLKYDNCYNKGQFGTPEISYHRYKAMSDALNKTGRPIFYSLCNWGQDLTFYWGSGIANSWRMSGDVTAEFTRPDSRCPCDGDEYDCKYAGFHCSIMNILNKAAPMGQNAGVGGWNDLDNLEVGVGNLTDDEEKAHFSMWAMVKSPLIIGANVNNLKASSYSIYSQASVIAINQDSNGIPATRVWRYYVSDTDEYGQGEIQMWSGPLDNGDQVVALLNGGSVSRPMNTTLEEIFFDSNLGSKKLTSTWDIYDLWANRVDNSTASAILGRNKTATGILYNATEQSYKDGLSKNDTRLFGQKIGSLSPNAILNTTVPAHGIAFYRLRPS 470
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeehhhhhh...hhhhhhhhhhhhhhh.hhhhh..eee.....eeee.....eee.......hhhhhhhhhhhh..eeeeeee..............hhhhhhhhhhhh...eeeee.........hhhhhhhhhhhhhhhhhhh....eeee......hhhhhh.....eee................................hhhhhhhhhhhhhhhh....eee...........hhhhhhhhhhhhhhh...eee..hhhh..hhhhhhh.hhhhhhhhh.......eeeeeee..........eeeeeeee.....eeeeeee.....eeeeehhhhhh......hhhhhh.eeeee......hhhhhhhhhh...............hhhhhhhh.hhhhhheeeeee.....eeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------ALPHA_GALACTOSID------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lrm A  19 VSPSYNGLGLTPQMGWDNWNTFACDVSEQLLLDTADRISDLGLKDMGYKYIILDDCWSSGRDSDGFLVADEQKFPNGMGHVADHLHNNSFLFGMYSSAGEYTCAGYPGSLGREEEDAQFFANNRVDYLKYANCYNKGQFGTPEISYHRYKAMSDALNKTGRPVFYSLCNWGQDLTFYWGSGIANSWRMSGDVTAEFTRPDSRCPCDGDEYDCKYAGFHCSIMNILNKAAPMGQNAGVGGWNDLDNLEVGVGNLTDDEEKAHFSMWAMVKSPLIIGANVNNLKASSYSIYSQASVIAINQDSNGIPATRVWRYYVSDTDEYGQGEIQMWSGPLDNGDQVVALLNGGSVSRPMNTTLEEIFFDSNLGSKKLTSTWDIYDLWANRVDNSTASAILGRNKTATGILYNATEQSYKDGLSKNDTRLFGQKIGSLSPNAILNTTVPAHGIAFYRLRPS 470
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468

Chain B from PDB  Type:PROTEIN  Length:452
 aligned with MEL1_YEASX | P04824 from UniProtKB/Swiss-Prot  Length:471

    Alignment length:452
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468  
           MEL1_YEASX    19 VSPSYNGLGLTPQMGWDNWNTFACDVSEQLLLDTADRISDLGLKDMGYKYIILDDCWSSGRDSDGFLVADEQKFPNGMGHVADHLHNNSFLFGMYSSAGEYTCAGYPGSLGREEEDAQFFANNRVDYLKYDNCYNKGQFGTPEISYHRYKAMSDALNKTGRPIFYSLCNWGQDLTFYWGSGIANSWRMSGDVTAEFTRPDSRCPCDGDEYDCKYAGFHCSIMNILNKAAPMGQNAGVGGWNDLDNLEVGVGNLTDDEEKAHFSMWAMVKSPLIIGANVNNLKASSYSIYSQASVIAINQDSNGIPATRVWRYYVSDTDEYGQGEIQMWSGPLDNGDQVVALLNGGSVSRPMNTTLEEIFFDSNLGSKKLTSTWDIYDLWANRVDNSTASAILGRNKTATGILYNATEQSYKDGLSKNDTRLFGQKIGSLSPNAILNTTVPAHGIAFYRLRPS 470
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeehhhhhh...hhhhhhhhhhhhhhh.hhhhh..eee.....eeee.....eee.......hhhhhhhhhhhh..eeeeeee..............hhhhhhhhhhhh...eeeee.........hhhhhhhhhhhhhhhhhhh....eeee......hhhhhh.....eee................................hhhhhhhhhhhhhhhh....eee...........hhhhhhhhhhhhhhh...eee..hhhh..hhhhhhh.hhhhhhhhh.......eeeeeee..........eeeeeeee.....eeeeeee.....eeeeehhhhhh......hhhhhh.eeeee......hhhhhhhhhh...............hhhhhhhh.hhhhhheeeeee.....eeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------ALPHA_GALACTOSID------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lrm B  19 VSPSYNGLGLTPQMGWDNWNTFACDVSEQLLLDTADRISDLGLKDMGYKYIILDDCWSSGRDSDGFLVADEQKFPNGMGHVADHLHNNSFLFGMYSSAGEYTCAGYPGSLGREEEDAQFFANNRVDYLKYANCYNKGQFGTPEISYHRYKAMSDALNKTGRPVFYSLCNWGQDLTFYWGSGIANSWRMSGDVTAEFTRPDSRCPCDGDEYDCKYAGFHCSIMNILNKAAPMGQNAGVGGWNDLDNLEVGVGNLTDDEEKAHFSMWAMVKSPLIIGANVNNLKASSYSIYSQASVIAINQDSNGIPATRVWRYYVSDTDEYGQGEIQMWSGPLDNGDQVVALLNGGSVSRPMNTTLEEIFFDSNLGSKKLTSTWDIYDLWANRVDNSTASAILGRNKTATGILYNATEQSYKDGLSKNDTRLFGQKIGSLSPNAILNTTVPAHGIAFYRLRPS 470
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468

Chain C from PDB  Type:PROTEIN  Length:452
 aligned with MEL1_YEASX | P04824 from UniProtKB/Swiss-Prot  Length:471

    Alignment length:452
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468  
           MEL1_YEASX    19 VSPSYNGLGLTPQMGWDNWNTFACDVSEQLLLDTADRISDLGLKDMGYKYIILDDCWSSGRDSDGFLVADEQKFPNGMGHVADHLHNNSFLFGMYSSAGEYTCAGYPGSLGREEEDAQFFANNRVDYLKYDNCYNKGQFGTPEISYHRYKAMSDALNKTGRPIFYSLCNWGQDLTFYWGSGIANSWRMSGDVTAEFTRPDSRCPCDGDEYDCKYAGFHCSIMNILNKAAPMGQNAGVGGWNDLDNLEVGVGNLTDDEEKAHFSMWAMVKSPLIIGANVNNLKASSYSIYSQASVIAINQDSNGIPATRVWRYYVSDTDEYGQGEIQMWSGPLDNGDQVVALLNGGSVSRPMNTTLEEIFFDSNLGSKKLTSTWDIYDLWANRVDNSTASAILGRNKTATGILYNATEQSYKDGLSKNDTRLFGQKIGSLSPNAILNTTVPAHGIAFYRLRPS 470
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeehhhhhh...hhhhhhhhhhhhhhh.hhhhh..eee.....eeee.....eee.......hhhhhhhhhhhh..eeeeeee..............hhhhhhhhhhhh...eeeee.........hhhhhhhhhhhhhhhhhhh....eeee......hhhhhh.....eee................................hhhhhhhhhhhhhhhh....eee...........hhhhhhhhhhhhhhh...eee..hhhh..hhhhhhh.hhhhhhhhh.......eeeeeee..........eeeeeeee.....eeeeeee.....eeeeehhhhhh......hhhhhh.eeeee......hhhhhhhhhh...............hhhhhhhh.hhhhhheeeeee.....eeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------ALPHA_GALACTOSID------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lrm C  19 VSPSYNGLGLTPQMGWDNWNTFACDVSEQLLLDTADRISDLGLKDMGYKYIILDDCWSSGRDSDGFLVADEQKFPNGMGHVADHLHNNSFLFGMYSSAGEYTCAGYPGSLGREEEDAQFFANNRVDYLKYANCYNKGQFGTPEISYHRYKAMSDALNKTGRPVFYSLCNWGQDLTFYWGSGIANSWRMSGDVTAEFTRPDSRCPCDGDEYDCKYAGFHCSIMNILNKAAPMGQNAGVGGWNDLDNLEVGVGNLTDDEEKAHFSMWAMVKSPLIIGANVNNLKASSYSIYSQASVIAINQDSNGIPATRVWRYYVSDTDEYGQGEIQMWSGPLDNGDQVVALLNGGSVSRPMNTTLEEIFFDSNLGSKKLTSTWDIYDLWANRVDNSTASAILGRNKTATGILYNATEQSYKDGLSKNDTRLFGQKIGSLSPNAILNTTVPAHGIAFYRLRPS 470
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468

Chain D from PDB  Type:PROTEIN  Length:452
 aligned with MEL1_YEASX | P04824 from UniProtKB/Swiss-Prot  Length:471

    Alignment length:452
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468  
           MEL1_YEASX    19 VSPSYNGLGLTPQMGWDNWNTFACDVSEQLLLDTADRISDLGLKDMGYKYIILDDCWSSGRDSDGFLVADEQKFPNGMGHVADHLHNNSFLFGMYSSAGEYTCAGYPGSLGREEEDAQFFANNRVDYLKYDNCYNKGQFGTPEISYHRYKAMSDALNKTGRPIFYSLCNWGQDLTFYWGSGIANSWRMSGDVTAEFTRPDSRCPCDGDEYDCKYAGFHCSIMNILNKAAPMGQNAGVGGWNDLDNLEVGVGNLTDDEEKAHFSMWAMVKSPLIIGANVNNLKASSYSIYSQASVIAINQDSNGIPATRVWRYYVSDTDEYGQGEIQMWSGPLDNGDQVVALLNGGSVSRPMNTTLEEIFFDSNLGSKKLTSTWDIYDLWANRVDNSTASAILGRNKTATGILYNATEQSYKDGLSKNDTRLFGQKIGSLSPNAILNTTVPAHGIAFYRLRPS 470
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) Melibiase-3lrmD01 D:19-363                                                                                                                                                                                                                                                                                                                               ----------------------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) Melibiase-3lrmD02 D:19-363                                                                                                                                                                                                                                                                                                                               ----------------------------------------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) Melibiase-3lrmD03 D:19-363                                                                                                                                                                                                                                                                                                                               ----------------------------------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) Melibiase-3lrmD04 D:19-363                                                                                                                                                                                                                                                                                                                               ----------------------------------------------------------------------------------------------------------- Pfam domains (4)
         Sec.struct. author .............eeeehhhhhh...hhhhhhhhhhhhhhh.hhhhh..eee.....eeee.....eee........hhhhhhhhhhh..eeeeeee..............hhhhhhhhhhhh...eeeee.........hhhhhhhhhhhhhhhhhhh....eeee......hhhhhh.....eee................................hhhhhhhhhhhhhhhh....eee...........hhhhhhhhhhhhhhh...eee..hhhh..hhhhhhh.hhhhhhhhh.......eeeeeee..........eeeeeeee.....eeeeeee.....eeeeehhhhhh......hhhhhh.eeeee......hhhhhhhhhh...............hhhhhhhh.hhhhhheeeeee.....eeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------ALPHA_GALACTOSID------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lrm D  19 VSPSYNGLGLTPQMGWDNWNTFACDVSEQLLLDTADRISDLGLKDMGYKYIILDDCWSSGRDSDGFLVADEQKFPNGMGHVADHLHNNSFLFGMYSSAGEYTCAGYPGSLGREEEDAQFFANNRVDYLKYANCYNKGQFGTPEISYHRYKAMSDALNKTGRPVFYSLCNWGQDLTFYWGSGIANSWRMSGDVTAEFTRPDSRCPCDGDEYDCKYAGFHCSIMNILNKAAPMGQNAGVGGWNDLDNLEVGVGNLTDDEEKAHFSMWAMVKSPLIIGANVNNLKASSYSIYSQASVIAINQDSNGIPATRVWRYYVSDTDEYGQGEIQMWSGPLDNGDQVVALLNGGSVSRPMNTTLEEIFFDSNLGSKKLTSTWDIYDLWANRVDNSTASAILGRNKTATGILYNATEQSYKDGLSKNDTRLFGQKIGSLSPNAILNTTVPAHGIAFYRLRPS 470
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3LRM)

(no "CATH Domain" information available for 3LRM)

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Glyco_hydro_tim (488)

Family: Melibiase (11)

Saccharomyces cerevisiae (Bakers yeast) (3)

1a	Melibiase-3lrmD01	D:19-363
1b	Melibiase-3lrmD02	D:19-363
1c	Melibiase-3lrmD03	D:19-363
1d	Melibiase-3lrmD04	D:19-363

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D (MEL1_YEASX | P04824)

molecular function
	GO:0004557	alpha-galactosidase activity	Catalysis of the hydrolysis of terminal, non-reducing alpha-D-galactose residues in alpha-D-galactosides, including galactose oligosaccharides, galactomannans and galactohydrolase.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0016798	hydrolase activity, acting on glycosyl bonds	Catalysis of the hydrolysis of any glycosyl bond.
	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	Catalysis of the hydrolysis of any O-glycosyl bond.
	GO:0052692	raffinose alpha-galactosidase activity	Catalysis of the reaction: raffinose + H2O = alpha-D-galactose + sucrose.
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3lrm)

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	3lrm
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	3.2.1.22
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UniProtKB/Swiss-Prot
	MEL1_YEASX \| P04824	:	3lrk 3lrl

3lrk	NATIVE ALPHA-GALACTOSIDASE FROM SACCHAROMYCES CEREVISIAE
3lrl	NATIVE ALPHA-GALACTOSIDASE FROM SACCHAROMYCES CEREVISIAE COMPLEXED WITH MELIBIOSE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 29)

Sites (29, 29)

SS Bonds (16, 16)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 4)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (1, 4)

Gene Ontology (9, 9)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File