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(-) Description

Title :  CRYSTAL STRUCTURE OF A BIFUNCTIONAL GLUTATHIONE SYNTHETASE FROM PASTEURELLA MULTOCIDA
 
Authors :  J. Stout, B. Vergauwen, S. N. Savvides
Date :  02 Feb 10  (Deposition) - 13 Apr 11  (Release) - 13 Apr 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Gamma-Glutamylcysteine Ligase Domain, Atp-Grasp Domain, Hybrid Enzyme, Atp-Binding, Glutathione Biosynthesis, Ligase, Metal- Binding, Multifunctional Enzyme, Nucleotide-Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Stout, D. De Vos, B. Vergauwen, S. N. Savvides
Structures Of Two Bifunctional Gamma-Glutamate-Cysteine Ligase/Glutathione Synthetases (Gshf) Reveal A Novel Hybrid Atp-Grasp Fold
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GLUTATHIONE BIOSYNTHESIS BIFUNCTIONAL PROTEIN GSHAB
    Chains: A, B
    EC Number: 6.3.2.2, 6.3.2.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11A
    Expression System Strain: B834
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: GSHAB, GSHF, PM1048
    Organism Scientific: PASTEURELLA MULTOCIDA
    Organism Taxid: 747
    Synonym: GAMMA-GCS-GS, GCS-GS, GLUTAMATE--CYSTEINE LIGASE, GAMMA- GLUTAMYLCYSTEINE SYNTHETASE, GAMMA-ECS, GCS, GLUTATHIONE SYNTHETASE, GLUTATHIONE SYNTHASE, GSH SYNTHETASE, GSH-S, GSHASE, GS

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 38)

Asymmetric/Biological Unit (1, 38)
No.NameCountTypeFull Name
1MSE38Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3LN7)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3LN7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3LN7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3LN7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3LN7)

(-) Exons   (0, 0)

(no "Exon" information available for 3LN7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:747
 aligned with GSHAB_PASMU | Q9CM00 from UniProtKB/Swiss-Prot  Length:757

    Alignment length:755
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751     
          GSHAB_PASMU     2 KIQHIIHENQLGLLFQQGSFGLEKESQRVTADGAIVTTPHPAVFGNRRYHPYIQTDFAESQLELITPPTKKLEDTFRWLSVIHEVVQRSLPEEEYIFPLSMPAGLPAEEQIRVAQLDNPEDVAYREYLVKIYGKNKQMVSGIHYNFQLSPDLITRLFRLQNEYQSAVDFQNDLYLKMAKNFLRYQWILLYLLAATPTVESAYFKDGSPLAKGQFVRSLRSSQYGYVNDPEINVSFDSVEKYVESLEHWVSTGKLIAEKEFYSNVRLRGAKKAREFLTTGIQYLEFRLFDLNPFEIYGISLKDAKFIHVFALFMIWMDHTADQEEVELGKARLAEVAFEHPLEKTAYAVEGELVLLELLSMLEQIGAEPELFEIVKEKLTQFTDPSKTVAGRLVRAIEQAGSDQQLGAQLAQQYKAQAFERFYALSAFDNMELSTQALLFDVIQKGIHTEILDENDQFLCLKYGDHIEYVKNGNMTSHDSYISPLIMENKVVTKKVLQKAGFNVPQSVEFTSLEKAVASYALFENRAVVIKPKSTNYGLGITIFQQGVQNREDFAKALEIAFREDKEVMVEDYLVGTEYRFFVLGDETLAVLLRVPANVVGDSVHSVAELVAMKNDHPLRGDGSRTPLKKIALGEIEQLQLKEQGLTIDSIPAKDQLVQLRANSNISTGGDSIDMTDEMHESYKQLAVGITKAMGAAVCGVDLIIPDLKQPATPNLTSWGVIEANFNPMMMMHIFPYAGKSRRLTQNVIKMLFPEL 756
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhheeeeeeeeee.ee......................ee......eeeeeeeee.hhhhhhhhhhhhhhhhhhhh...ee............---.......hhhhhhhhhhhhhhhhhhhhhh...eeeeeehhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....----...................................hhhhhhhhhhhhhhh-...........eeee...hhhhhhhhh..eeee.............hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhh.eeeeee....eeeeee..eeeeee.........hhhhhhhhhhhhhhhhhhhhh.....eeee.hhhhhhhhhhhh....eeeee.........ee......hhhhhhhhhhhhhhhh..eeeee....eeeeeeee..eeeeeeee...eee.hhh.hhhhhhhhhhh...ee......ee....hhhhhhhhhhhh...........eee.....hhhhh..eee.....hhhhhhhhhhhhhhhh..eeeeeeee..............eeeeee...hhhhhhh........hhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ln7 A   2 KIQHIIHENQLGLLFQQGSFGLEKESQRVTADGAIVTTPHPAVFGNRRYHPYIQTDFAESQLELITPPTKKLEDTFRWLSVIHEVVQRSLPEEEYIFPLSmPAGLPA---IRVAQLDNPEDVAYREYLVKIYGKNKQmVSGIHYNFQLSPDLITRLFRLQNEYQSAVDFQNDLYLKmAKNFLRYQWILLYLLAATPT----YFKDGSPLAKGQFVRSLRSSQYGYVNDPEINVSFDSVEKYVESLEHWVST-KLIAEKEFYSNVRLRGAKKAREFLTTGIQYLEFRLFDLNPFEIYGISLKDAKFIHVFALFmIWmDHTADQEEVELGKARLAEVAFEHPLEKTAYAVEGELVLLELLSmLEQIGAEPELFEIVKEKLTQFTDPSKTVAGRLVRAIEQAGSDQQLGAQLAQQYKAQAFERFYALSAFDNmELSTQALLFDVIQKGIHTEILDENDQFLCLKYGDHIEYVKNGNmTSHDSYISPLImENKVVTKKVLQKAGFNVPQSVEFTSLEKAVASYALFENRAVVIKPKSTNYGLGITIFQQGVQNREDFAKALEIAFREDKEVmVEDYLVGTEYRFFVLGDETLAVLLRVPANVVGDSVHSVAELVAmKNDHPLRGDGSRTPLKKIALGEIEQLQLKEQGLTIDSIPAKDQLVQLRANSNISTGGDSIDmTDEmHESYKQLAVGITKAmGAAVCGVDLIIPDLKQPATPNLTSWGVIEANFNPmmmmHIFPYAGKSRRLTQNVIKmLFPEL 756
                                    11        21        31        41        51        61        71        81        91       101|     |  -|      121       131       141       151       161       171      |181       191      |  - |     211       221       231       241       251| |    261       271       281       291       301       311  |  | 321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471   |   481     | 491       501       511       521       531       541       551       561       571       581       591       601       611 |     621       631       641       651       661       671   |   681       691  |    701       711       721       731|      741       751     
                                                                                                                              102-MSE08 112                        139-MSE                                178-MSE             198  203                                              252 |                                                         314-MSE                                        361-MSE                                                               431-MSE                                     475-MSE     487-MSE                                                                           569-MSE                                     613-MSE                                                       675-MSE            694-MSE                            729-MSE               751-MSE 
                                                                                                                                                                                                                                                                                      254                                                            317-MSE                                                                                                                                                                                                                                                                                                                                                                   679-MSE                                            730-MSE                      
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   731-MSE                     
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    732-MSE                    


Chain B from PDB  Type:PROTEIN  Length:729
 aligned with GSHAB_PASMU | Q9CM00 from UniProtKB/Swiss-Prot  Length:757

    Alignment length:755
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751     
          GSHAB_PASMU     2 KIQHIIHENQLGLLFQQGSFGLEKESQRVTADGAIVTTPHPAVFGNRRYHPYIQTDFAESQLELITPPTKKLEDTFRWLSVIHEVVQRSLPEEEYIFPLSMPAGLPAEEQIRVAQLDNPEDVAYREYLVKIYGKNKQMVSGIHYNFQLSPDLITRLFRLQNEYQSAVDFQNDLYLKMAKNFLRYQWILLYLLAATPTVESAYFKDGSPLAKGQFVRSLRSSQYGYVNDPEINVSFDSVEKYVESLEHWVSTGKLIAEKEFYSNVRLRGAKKAREFLTTGIQYLEFRLFDLNPFEIYGISLKDAKFIHVFALFMIWMDHTADQEEVELGKARLAEVAFEHPLEKTAYAVEGELVLLELLSMLEQIGAEPELFEIVKEKLTQFTDPSKTVAGRLVRAIEQAGSDQQLGAQLAQQYKAQAFERFYALSAFDNMELSTQALLFDVIQKGIHTEILDENDQFLCLKYGDHIEYVKNGNMTSHDSYISPLIMENKVVTKKVLQKAGFNVPQSVEFTSLEKAVASYALFENRAVVIKPKSTNYGLGITIFQQGVQNREDFAKALEIAFREDKEVMVEDYLVGTEYRFFVLGDETLAVLLRVPANVVGDSVHSVAELVAMKNDHPLRGDGSRTPLKKIALGEIEQLQLKEQGLTIDSIPAKDQLVQLRANSNISTGGDSIDMTDEMHESYKQLAVGITKAMGAAVCGVDLIIPDLKQPATPNLTSWGVIEANFNPMMMMHIFPYAGKSRRLTQNVIKMLFPEL 756
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) Glu_cys_ligase-3ln7B03 B:2-337                                                                                                                                                                                                                                                                                                                  ----------------------------------------------------------------------------------------------------------------------------------------------------ATP-grasp_4-3ln7B01 B:486-621                                                                                                           --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) Glu_cys_ligase-3ln7B04 B:2-337                                                                                                                                                                                                                                                                                                                  ----------------------------------------------------------------------------------------------------------------------------------------------------ATP-grasp_4-3ln7B02 B:486-621                                                                                                           --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (2)
         Sec.struct. author ....hhhhhhhhhhhhheeeeeeeeeeeee......................eee.....eeeeeeeee.hhhhhhhhhhhhhhhhhhhh...eee...................---------hhhhhhhhhhhhhhh.eeeeeeeehhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh........--.....-----...............-........hhhhhhhhhhhhhh-----........ee......hhhhhhhh...eeeeeee.........hhhhhhhhhhhhhhhhhh..--hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh..hhhhhhhhhhhhhhh.eeeeee....eeeeee..eeeeee.........hhhhhhhhhhhhhhhhhhhhh.....eeee.hhhhhhhhhhhh--..eeeee.................hhhhhhhhhhhhhhhh..eeeee....eeeeeeee..eeeeeeeee..eee.....hhhhhhhhhh..................hhhhhhhhhhh............eee...........eeee.....hhhhhhhhhhhhhhhh....eeeeee..............eeeeee....hhhhhh.......hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ln7 B   2 KIQHIIHENQLGLLFQQGSFGLEKESQRVTADGAIVTTPHPAVFGNRRYHPYIQTDFAESQLELITPPTKKLEDTFRWLSVIHEVVQRSLPEEEYIFPLSmPAGLPAEEQIRVAQ---------REYLVKIYGKNKQmVSGIHYNFQLSPDLITRLFRLQNEYQSAVDFQNDLYLKmAKNFLRYQWILLYLLAATPTVES--FKDGS-----QFVRSLRSSQYGYVN-PEINVSFDSVEKYVESLEHWVS-----AEKEFYSNVRLRGAKKAREFLTTGIQYLEFRLFDLNPFEIYGISLKDAKFIHVFALFmIWmDH--DQEEVELGKARLAEVAFEHPLEKTAYAVEGELVLLELLSmLEQIGAEPELFEIVKEKLTQFTDPSKTVAGRLVRAIEQAGSDQQLGAQLAQQYKAQAFERFYALSAFDNmELSTQALLFDVIQKGIHTEILDENDQFLCLKYGDHIEYVKNGNmTSHDSYISPLImENKVVTKKVLQKAGFNVPQSVEFTSLEKAVASYALF--RAVVIKPKSTNYGLGITIFQQGVQNREDFAKALEIAFREDKEVmVEDYLVGTEYRFFVLGDETLAVLLRVPANVVGDSVHSVAELVAmKNDHPLRGDGSRTPLKKIALGEIEQLQLKEQGLTIDSIPAKDQLVQLRANSNISTGGDSIDmTDEmHESYKQLAVGITKAmGAAVCGVDLIIPDLKQPATPNLTSWGVIEANFNPmmmmHIFPYAGKSRRLTQNVIKmLFPEL 756
                                    11        21        31        41        51        61        71        81        91       101|      111    |    -    |  131       141       151       161       171      |181       191       201  |   |  -  |    221      |231       241       251     | 261       271       281       291       301       311  |  | | -|      331       341       351       361       371       381       391       401       411       421       431       441       451       461       471   |   481     | 491       501       511       521 |  |  531       541       551       561       571       581       591       601       611 |     621       631       641       651       661       671   |   681       691  |    701       711       721       731|      741       751     
                                                                                                                              102-MSE       116       126          139-MSE                                178-MSE                201  | 208   214           228 |                  251   257                                                      314-MSE|  |                                    361-MSE                                                               431-MSE                                     475-MSE     487-MSE                             523  |                                        569-MSE                                     613-MSE                                                       675-MSE            694-MSE                            729-MSE               751-MSE 
                                                                                                                                                                                                                                    204                       230                                                                                    317-MSE|                                                                                                                                                                                                         526                                                                                                                                                      679-MSE                                            730-MSE                      
                                                                                                                                                                                                                                                                                                                                                       319  |                                                                                                                                                                                                                                                                                                                                                                                                                      731-MSE                     
                                                                                                                                                                                                                                                                                                                                                          322                                                                                                                                                                                                                                                                                                                                                                                                                       732-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3LN7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3LN7)

(-) Pfam Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Clan: ATP-grasp (83)
(-)
Clan: GCS (23)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (GSHAB_PASMU | Q9CM00)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0004357    glutamate-cysteine ligase activity    Catalysis of the reaction: L-cysteine + L-glutamate + ATP = L-gamma-glutamyl-L-cysteine + ADP + 2 H(+) + phosphate.
    GO:0004363    glutathione synthase activity    Catalysis of the reaction: L-gamma-glutamyl-L-cysteine + ATP + glycine = ADP + glutathione + 2 H(+) + phosphate.
    GO:0016874    ligase activity    Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0030145    manganese ion binding    Interacting selectively and non-covalently with manganese (Mn) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0006750    glutathione biosynthetic process    The chemical reactions and pathways resulting in the formation of glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

3ln6