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(-) Description

Title :  CRYSTAL STRUCTURE OF 3-KETOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE FROM MYCOBACTERIUM TUBERCULOSIS
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  29 Jan 10  (Deposition) - 16 Feb 10  (Release) - 22 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Niaid, Emerald Biostructures, Uw, Sbri, 3-Ketoacyl-(Acyl-Carrier- Protein) Reductase, Oxidoreductase, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Ssgcid (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Baugh, I. Phan, D. W. Begley, M. C. Clifton, B. Armour, D. M. Dranow, B. M. Taylor, M. M. Muruthi, J. Abendroth, J. W. Fairman, D. Fox, S. H. Dieterich, B. L. Staker, A. S. Gardberg, R. Choi, S. N. Hewitt, A. J. Napuli, J. Myers, L. K. Barrett, Y. Zhang, M. Ferrell, E. Mundt, K. Thompkins, N. Tran, S. Lyons-Abbott, A. Abramov, A. Sekar, D. Serbzhinskiy, D. Lorimer, G. W. Buchko, R. Stacy, L. J. Stewart, T. E. Edwards, W. C. Van Voorhis, P. J. Myler
Increasing The Structural Coverage Of Tuberculosis Drug Targets.
Tuberculosis (Edinb) V. 95 142 2015
PubMed-ID: 25613812  |  Reference-DOI: 10.1016/J.TUBE.2014.12.003

(-) Compounds

Molecule 1 - 3-KETOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE
    Chains: A, B
    EC Number: 1.1.1.100
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: AVA0421
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: FABG-1, GCHV, MRA_0251, MT1874, MTCY1A11.17C, RV1826
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 419947
    Strain: ATCC 25177 / H37RA

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 11)

Asymmetric/Biological Unit (2, 11)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL
2SO49Ligand/IonSULFATE ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:82 , GLY A:114 , ARG A:115 , ARG A:154 , ASN A:306BINDING SITE FOR RESIDUE SO4 A 500
02AC2SOFTWAREARG A:223 , GLY A:224 , ILE A:225 , GLY A:226 , ASN A:295 , HOH A:492BINDING SITE FOR RESIDUE SO4 A 501
03AC3SOFTWAREARG A:139 , HOH A:507 , GLN B:372BINDING SITE FOR RESIDUE SO4 A 502
04AC4SOFTWAREARG A:223 , GLY A:224BINDING SITE FOR RESIDUE SO4 A 503
05AC5SOFTWARESER A:131 , THR A:132 , HOH A:510 , HOH A:553 , HOH A:684BINDING SITE FOR RESIDUE SO4 A 504
06AC6SOFTWAREASN A:442 , VAL A:443 , VAL B:193 , SER B:195BINDING SITE FOR RESIDUE EDO A 505
07AC7SOFTWARESER B:82 , GLY B:114 , ARG B:115 , ARG B:154BINDING SITE FOR RESIDUE SO4 B 500
08AC8SOFTWAREARG B:223 , GLY B:224 , ILE B:225 , GLY B:226 , ASN B:295BINDING SITE FOR RESIDUE SO4 B 501
09AC9SOFTWAREGLN A:372 , ARG B:139 , HOH B:543 , HOH B:621BINDING SITE FOR RESIDUE SO4 B 502
10BC1SOFTWAREGLY B:224BINDING SITE FOR RESIDUE SO4 B 503
11BC2SOFTWAREVAL A:193 , SER A:195 , GLY B:441 , ASN B:442 , VAL B:443 , HOH B:622BINDING SITE FOR RESIDUE EDO B 505

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3LLS)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3LLS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3LLS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3LLS)

(-) Exons   (0, 0)

(no "Exon" information available for 3LLS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:404
 aligned with A5TYW8_MYCTA | A5TYW8 from UniProtKB/TrEMBL  Length:454

    Alignment length:426
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448      
         A5TYW8_MYCTA    29 PQPETLRRYRAGEPPLTGSLLIGGAGRVVEPLRAALEKDYDLVGNNLGGRWADSFGGLVFDATGITEPAGLKGLHEFFTPVLRNLGRCGRVVVVGGTPEAAASTNERIAQRALEGFTRSLGKELRRGATTALVYLSPDAKPAATGLESTMRFLLSAKSAYVDGQVFSVGADDSTPPADWEKPLDGKVAIVTGAARGIGATIAEVFARDGAHVVAIDVESAAENLAETASKVGGTALWLDVTADDAVDKISEHLRDHHGGKADILVNNAGITRDKLLANMDDARWDAVLAVNLLAPLRLTEGLVGNGSIGEGGRVIGLSSIAGIAGNRGQTNYATTKAGMIGITQALAPGLAAKGITINAVAPGFIETQMTAAIPLATREVGRRLNSLLQGGQPVDVAEAIAYFASPASNAVTGNVIRVCGQAMIGA 454
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..................eeeeee...hhhhhhhhhh....ee..-------..eeeeeee.....hhhhhhhhhhhhh.hhh.eeeeeeeeeeee.hhhh.hhhhhhhhhhhhhhhhhhhh......eeeeeee.......hhhhhhhhhhhhhhhhh....eeeee..................eeee.....hhhhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhhh.eeee......hhhhhhhhhhhhhhh..eeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeee....---------------..........hhhhhhhhhhhhhhhhhh.....eeee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3lls A  29 PQPETLRRYRAGEPPLTGSLLIGGAGRVVEPLRAALEKDYDLVGN-------DSFGGLVFDATGITEPAGLKGLHEFFTPVLRNLGRCGRVVVVGGTPEAAASTNERIAQRALEGFTRSLGKELRRGATTALVYLSPDAKPAATGLESTMRFLLSAKSAYVDGQVFSVGADDSTPPADWEKPLDGKVAIVTGAARGIGATIAEVFARDGAHVVAIDVESAAENLAETASKVGGTALWLDVTADDAVDKISEHLRDHHGGKADILVNNAGITRDKLLANMDDARWDAVLAVNLLAPLRLTEGLVGNGSIGEGGRVIGLSSIAGIAGNRGQTNYATTKAGMIGITQALAPGLAAKGITINAVAPGFIE---------------RRLNSLLQGGQPVDVAEAIAYFASPASNAVTGNVIRVCGQAMIGA 454
                                    38        48        58        68    |    -  |     88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388     |   -         - |     418       428       438       448      
                                                                       73      81                                                                                                                                                                                                                                                                                                                      394             410                                            


Chain B from PDB  Type:PROTEIN  Length:402
 aligned with A5TYW8_MYCTA | A5TYW8 from UniProtKB/TrEMBL  Length:454

    Alignment length:424
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450    
         A5TYW8_MYCTA    31 PETLRRYRAGEPPLTGSLLIGGAGRVVEPLRAALEKDYDLVGNNLGGRWADSFGGLVFDATGITEPAGLKGLHEFFTPVLRNLGRCGRVVVVGGTPEAAASTNERIAQRALEGFTRSLGKELRRGATTALVYLSPDAKPAATGLESTMRFLLSAKSAYVDGQVFSVGADDSTPPADWEKPLDGKVAIVTGAARGIGATIAEVFARDGAHVVAIDVESAAENLAETASKVGGTALWLDVTADDAVDKISEHLRDHHGGKADILVNNAGITRDKLLANMDDARWDAVLAVNLLAPLRLTEGLVGNGSIGEGGRVIGLSSIAGIAGNRGQTNYATTKAGMIGITQALAPGLAAKGITINAVAPGFIETQMTAAIPLATREVGRRLNSLLQGGQPVDVAEAIAYFASPASNAVTGNVIRVCGQAMIGA 454
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------adh_short-3llsB01 B:214-379                                                                                                                                           --------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------adh_short-3llsB02 B:214-379                                                                                                                                           --------------------------------------------------------------------------- Pfam domains (2)
         Sec.struct. author ................eeeeee...hhhhhhhhhh....ee.-------...eeeeeee.....hhhhhhhhhhhhhhhhh.eeeeeeeeeeee.hhhh.hhhhhhhhhhhhhhhhhhhh......eeeeeee.......hhhhhhhhhhhhhhhhh....eeeee..................eeeee...hhhhhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhhh.eeee......hhhhhhhhhhhhhh...eeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee....---------------..........hhhhhhhhhhhhhhhhhh.....eeee........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lls B  31 PETLRRYRAGEPPLTGSLLIGGAGRVVEPLRAALEKDYDLVG-------ADSFGGLVFDATGITEPAGLKGLHEFFTPVLRNLGRCGRVVVVGGTPEAAASTNERIAQRALEGFTRSLGKELRRGATTALVYLSPDAKPAATGLESTMRFLLSAKSAYVDGQVFSVGADDSTPPADWEKPLDGKVAIVTGAARGIGATIAEVFARDGAHVVAIDVESAAENLAETASKVGGTALWLDVTADDAVDKISEHLRDHHGGKADILVNNAGITRDKLLANMDDARWDAVLAVNLLAPLRLTEGLVGNGSIGEGGRVIGLSSIAGIAGNRGQTNYATTKAGMIGITQALAPGLAAKGITINAVAPGFIE---------------RRLNSLLQGGQPVDVAEAIAYFASPASNAVTGNVIRVCGQAMIGA 454
                                    40        50        60        70 |      80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390   |     -       410       420       430       440       450    
                                                                    72      80                                                                                                                                                                                                                                                                                                                       394             410
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3LLS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3LLS)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: NADP_Rossmann (1239)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (A5TYW8_MYCTA | A5TYW8)
molecular function
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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