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(-) Description

Title :  CRYSTAL STRUCTURE OF FRUCTOSYLTRANSFERASE (D191A) FROM A. JAPONICUS IN COMPLEX WITH RAFFINOSE
 
Authors :  P. Chuankhayan, C. J. Chen, C. M. Chiang
Date :  24 Jan 10  (Deposition) - 12 May 10  (Release) - 30 May 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (2x)
Keywords :  Protein-Oligosaccharide Complex, Five Bladed Beta-Propeller Fold, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Chuankhayan, C. Y. Hsieh, Y. C. Huang, Y. Y. Hsieh, H. H. Guan, Y. C. Hsieh, Y. C. Tien, C. D. Chen, C. M. Chiang, C. J. Chen
Crystal Structures Of Aspergillus Japonicus Fructosyltransferase Complex With Donor/Acceptor Substrates Reveal Complete Subsites In The Active Site For Catalysis
J. Biol. Chem. V. 285 23251 2010
PubMed-ID: 20466731  |  Reference-DOI: 10.1074/JBC.M110.113027

(-) Compounds

Molecule 1 - FRUCTOSYLTRANSFERASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Mutation: YES
    Organism Scientific: ASPERGILLUS JAPONICUS
    Organism Taxid: 34381

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1RAF1Ligand/IonRAFFINOSE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1RAF1Ligand/IonRAFFINOSE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1RAF2Ligand/IonRAFFINOSE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:17 , ASP A:60 , LEU A:78 , PHE A:118 , ASP A:119 , PRO A:142 , ILE A:143 , HIS A:144 , ARG A:190 , GLU A:292 , GLU A:318 , GLN A:327 , TYR A:369 , TRP A:398 , HOH A:655 , HOH A:657 , HOH A:676 , HOH A:678 , HOH A:713 , HOH A:716BINDING SITE FOR RESIDUE RAF A 654

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3LIH)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Leu A:141 -Pro A:142
2Leu A:322 -Pro A:323

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3LIH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3LIH)

(-) Exons   (0, 0)

(no "Exon" information available for 3LIH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:634
 aligned with Q1W3Z7_ASPJA | Q1W3Z7 from UniProtKB/TrEMBL  Length:638

    Alignment length:634
                                                                                                              102                                      142                                                           202                                                                                                                    319                      342                                                                 409         419                                                                                  502                                               550                                                                                       
                                                                                                           101  |                                    141 |                                                        201  |                                                                                                                 318  |                   341  |                                                               408 |      418  |                                                                               501  |                                            549  |                                                                                       
                                    29        39        49        59        69        79        89        99 |  |  107       117       127       137   | | 146       156       166       176       186       196    |  204       214       224       234       244       254       264       274       284       294       304       314   |  |322       332        |- |     350       360       370       380       390       400       409        |- |     427       437       447       457       467       477       487       497   |  |505       515       525       535       545   |  |553       563       573       583       593       603       613       623       633    
         Q1W3Z7_ASPJA    20 SYHLDTTAPPPTNLSTLPNNTLFHVWRPRAHILPAEGQIGDPCAHYTDPSTGLFHVGFLHDGDGIAGATTANLATYTDTSDN--FLIQPGGKNDPVAVFDGAVIPVGVNNTPTLLYTSVSFLPI-WSIPYTRGSETQSLAVARDGGRRFDKLDQGPVIADHPFAVDVTAFRDPFVFRSAKLDVLL--DEEVARNETAVQQAVDGWTEKNAPWYVAVSGGVHGVGPAQFLYRQNGGNASEFQYWEYLGEWWQEATNSSWGDEGTWAGRWGFNFETGNVLFLTEEGHDPQTGEVFVTLGTEGSGLP--PQVSSIHDMLWAAGEVGVGSEQE--KVEFSPSMAGFLDWGFSAYAAAGKVLPASSAVSKTSGVEVDRYVSFVWLTGDQYEQADGFPTAQQGW-GSLLLPRELK--TVENVVDNELVREEGVSWVVGESDNQTARLRTLGITIARETKAALLANGSVTAEEDRTLQTAAVVPFAQSPSSKFFVLTAQLD--ASARSSPLQSGFEILASELERTAIYYQFSNESLVVDRSQTSAAAPTNP--DSFTESGKLRLFDVIENGQEQVETLDLTVVVDNAVVEVYANGRFALSTWARSWYDNSTQIRFFHNGEGEVQFRNVSVSEGLYNAWPER 637
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -----------------------------------------------------------Glyco_hydro_32N-3lihA01 A:79-218                                                                                                            ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Glyco_hydro_32C-3lihA02 A:510-608                                                                  --------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhh...................eeeeee...ee......eeeeeee....eeeeee......ee......eee.........eeeeeeee..hhhhh.eeeeeee...............eeeeeeeeehhhheeee...............eeeeeeeeee.hhhhhhhhhh......hhhhhhhhhhhhhhhhh..eeeeeeee...eeeeeeeee.hhh......eeeeeeeee...................eeeeeeeeee..........eeeeeeeeee...........eeeeeeeeeeeee........eeeeeeeeeeee....eeeeeeeee...hhhhhhhh....eeeeeeee...........hhhhhhee.ee...eeeeeeeeeeee............eeeee...eeeeeeeeeeehhhhhhhhhh..eeeee..eee...eeee........eeeeeeeee.hhhhh....eeeeeeee.....eeeeee....eeeee......hhhhh.......eeee....eee....eee..eeeeeeee..eeeeee....eeeee.........eeeeee.....eeeeeeeeee......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lih A  20 SYHLDTTAPPPTNLSTLPNNTLFHLWRPRAHILPAEGQIGDPCAHYTDPSTGLFHVGFLHDGDGIAGATTANLATYTDTSDNGSFLIQPGGKNDPVAVFDGAVIPVGVNNTPTLLYTSVSFLPIHWSIPYTRGSETQSLAVARDGGRRFDKLDQGPVIADHPFAVDVTAFRAPFVFRSARLDVLLSLDEEVARNETAVQQAVDGWTEKNAPWYVAVSGGVHGVGPAQFLYRQNGGNASEFQYWEYLGEWWQEATNSSWGDEGTWAGRWGFNFETGNVLFLTEEGHDPQTGEVFVTLGTEGSGLPIVPQVSSIHDMLWAAGEVGVGSEQEGAKVEFSPSMAGFLDWGFSAYAAAGKVLPASSAVSKTSGVEVDRYVSFVWLTGDQYEQADGFPTAQQGWTGSLLLPRELKVQTVENVVDNELVREEGVSWVVGESDNQTATLRTLGITIARETKAALLANGSVTAEEDRTLQTAAVVPFAQSPSSKFFVLTAQLEFPASARSSPLQSGFEILASELERTAIYYQFSNESLVVDRSQTSAAAPTNPGLDSFTESGKLRLFDVIENGQEQVETLDLTVVVDNAVVEVYANGRFALSTWARSWYDNSTQIRFFHNGEGEVQFRNVSVSEGLYNAWPER 653
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3LIH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3LIH)

(-) Pfam Domains  (2, 2)

Asymmetric Unit
(-)
Clan: B_Fructosidase (34)
(-)
Clan: no clan defined [family: Glyco_hydro_32C] (13)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q1W3Z7_ASPJA | Q1W3Z7)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016798    hydrolase activity, acting on glycosyl bonds    Catalysis of the hydrolysis of any glycosyl bond.
    GO:0004553    hydrolase activity, hydrolyzing O-glycosyl compounds    Catalysis of the hydrolysis of any O-glycosyl bond.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q1W3Z7_ASPJA | Q1W3Z7: 3ldk 3ldr 3lem 3lf7 3lfi 3lig

(-) Related Entries Specified in the PDB File

3ldk THE SAME PROTEIN COMPLEXED WITH SUCROSE.
3ldr THE SAME PROTEIN COMPLEXED WITH 1-KESTOSE.
3lem THE SAME PROTEIN COMPLEXED WITH NYSTOSE.
3lf7 WILD-TYPE PROTEIN.
3lfi THE SAME PROTEIN COMPLEXED WITH GLUCOSE.
3lig MUTANT PROTEIN.