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(-) Description

Title :  THE CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF A GNTR FAMILY TRANSCRIPTIONAL REGULATOR FROM BACILLUS ANTHRACIS STR. STERNE
 
Authors :  K. Tan, G. Chhor, S. Clancy, A. Joachimiak, Midwest Center For Structural Genomics (Mcsg)
Date :  22 Jan 10  (Deposition) - 02 Feb 10  (Release) - 02 Feb 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.62
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcs G, Dna-Binding, Transcription, Transcription Regulation, Mcsg (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Tan, G. Chhor, S. Clancy, A. Joachimiak
The Crystal Structure Of The C-Terminal Domain Of A Gntr Family Transcriptional Regulator From Bacillus Anthracis Str. Sterne
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GNTR FAMILY TRANSCRIPTIONAL REGULATOR
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG19
    Expression System Strain: PPK1037
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: C-TERMINAL DOMAIN
    Gene: BAS3204, BA_3458, GBAA3458, GBAA_3458
    Organism Common: ANTHRAX,ANTHRAX BACTERIUM
    Organism Scientific: BACILLUS ANTHRACIS
    Organism Taxid: 260799
    Strain: STERNE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric/Biological Unit (3, 9)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2GOL3Ligand/IonGLYCEROL
3MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:179 , VAL A:183BINDING SITE FOR RESIDUE GOL A 1
2AC2SOFTWAREHOH A:78 , LYS A:117 , VAL A:180 , GLN A:201 , GLU A:208 , GLN A:209 , VAL A:210BINDING SITE FOR RESIDUE GOL A 2
3AC3SOFTWAREHOH A:64 , PHE A:125 , ILE A:149 , SER A:150BINDING SITE FOR RESIDUE CL A 233
4AC4SOFTWAREHOH A:59 , GLU A:99 , GLU A:116 , HIS A:136 , SER A:137BINDING SITE FOR RESIDUE CL A 234

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3LHE)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3LHE)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3LHE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3LHE)

(-) Exons   (0, 0)

(no "Exon" information available for 3LHE)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:124
 aligned with Q81MW2_BACAN | Q81MW2 from UniProtKB/TrEMBL  Length:245

    Alignment length:139
                                   102       112       122       132       142       152       162       172       182       192       202       212       222         
         Q81MW2_BACAN    93 VYGSEVESKIIEFTIVGADEIIAEKLGISVGDFVYKIIRLRIIHSIPTIMEHTWMPISVIPGVEVSVLEESIYSHIQNKLGLQVGTSVVRVKGIRPDDKEKQFMNLTNQDFLMRVEQVAYLTDGRTFEYSYADHLPETF 231
               SCOP domains d3lhea_ A: automated matches                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains UTRA-3lheA01 A:93-231                                                                                                                       Pfam domains
         Sec.struct. author ........eeeeeeeee.hhhhhhhhh.....eeeeeeeeeee..eeeeeeeeeee........---------------....eeeeeeeeeee..hhhhhhhhh......eeeeeeeeee....eeeeeeeee.hhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lhe A  93 VYGSEVESKIIEFTIVGADEIIAEKLGISVGDFVYKIIRLRIIHSIPTImEHTWmPISVIPGVE---------------LGLQVGTSVVRVKGIRPDDKEKQFmNLTNQDFLmRVEQVAYLTDGRTFEYSYADHLPETF 231
                                   102       112       122       132       142    |  152   |     -       172       182       192   |   202  |    212       222         
                                                                           142-MSE|      156             172                     196-MSE  205-MSE                      
                                                                                147-MSE
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3LHE)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: Chor_lyase (11)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q81MW2_BACAN | Q81MW2)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.

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