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(-) Description

Title :  THE CRYSTAL STRUCTURE OF THE ABC DOMAIN IN COMPLEX WITH L-TRP FROM STREPTOCOCCUS PNEUMONIA TO 1.35A
 
Authors :  A. J. Stein, R. Mulligan, J. Abdullah, A. Joachimiak, Midwest Center Structural Genomics (Mcsg)
Date :  18 Jan 10  (Deposition) - 02 Feb 10  (Release) - 22 Feb 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.35
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Abc, Atpase, Cassette, L-Trp, Psi, Mcsg, Structural Genomics, Midwest Center For Structural Genomics, Protein Structure Initiative, Structure Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  

To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: SP_1069
    Organism Scientific: STREPTOCOCCUS PNEUMONIAE
    Organism Taxid: 170187
    Strain: TIGR4

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 14)

Asymmetric Unit (2, 14)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
2TRP2Mod. Amino AcidTRYPTOPHAN
Biological Unit 1 (2, 7)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
2TRP1Mod. Amino AcidTRYPTOPHAN
Biological Unit 2 (2, 7)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
2TRP1Mod. Amino AcidTRYPTOPHAN

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:61 , SER A:63 , LEU A:64 , ILE A:67 , ALA A:118 , THR A:119 , ALA A:138 , ILE A:139 , THR A:140 , ASP A:163 , ASN A:194 , ILE A:242 , ASP A:243 , ASN A:244 , ALA A:247 , GLN A:284BINDING SITE FOR RESIDUE TRP A 1
2AC2SOFTWAREHIS B:61 , SER B:63 , LEU B:64 , ILE B:67 , ALA B:118 , THR B:119 , ALA B:138 , ILE B:139 , THR B:140 , ASP B:163 , ASN B:194 , ILE B:242 , ASP B:243 , ASN B:244 , GLN B:284BINDING SITE FOR RESIDUE TRP B 2

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3LFT)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3LFT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3LFT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3LFT)

(-) Exons   (0, 0)

(no "Exon" information available for 3LFT)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:296
 aligned with A0A0H2UPV6_S | A0A0H2UPV6 from UniProtKB/TrEMBL  Length:344

    Alignment length:303
                                                                                                                                                                                                                                                                                                                                       344 
                                    52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342 | 
         A0A0H2UPV6_S    43 NNKDEKKITKIGVLQFVSHPSLDLIYKGIQDGLAEEGYKDDQVKIDFMNSEGDQSKVATMSKQLVANGNDLVVGIATPAAQGLASATKDLPVIMAAITDPIGANLVKDLKKPGGNVTGVSDHNPAQQQVELIKALTPNVKTIGALYSSSEDNSKTQVEEFKAYAEKAGLTVETFAVPSTNEIASTVTVMTSKVDAIWVPIDNTIASGFPTVVSSNQSSKKPIYPSATAMVEVGGLASVVIDQHDLGVATGKMIVQVLKGAKPADTPVNVFSTGKSVINKKIAQELGITIPESVLKEAGQVIE-   -
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3l      ftA01 A:49-164,A:282-314  [code=3.40.50.2300, no name defined]                                                    3lftA02 A:165-281,A:315-343  [code=3.40.50.2300, no name defined]                                                    3lftA01 A:49-164,A:282-314       3lftA02 A:165-281,A:315-343  -- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..------eeeeeee...hhhhhhhhhhhhhhhhhh..hhh.eeeeeee...hhhhhhhhhhhhh.....eeeeehhhhhhhhhhhh....eeee....................eeeeee..hhhhhhhhhhhhh....eeeeeee..hhhhhhhhhhhhhhhhhh..eeeeeee.hhhhhhhhhhhhh....eeee..hhhhhhhhhhhhhhh......eee.hhhhhh....eeee.hhhhhhhhhhhhhhhhhh..hhhhh..eee...eeeeehhhhhhh....hhhhhhhh.eee-. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lft A  49 SN------AKIGVLQFVSHPSLDLIYKGIQDGLAEEGYKDDQVKIDFmNSEGDQSKVATmSKQLVANGNDLVVGIATPAAQGLASATKDLPVImAAITDPIGANLVKDLKKPGGNVTGVSDHNPAQQQVELIKALTPNVKTIGALYSSSEDNSKTQVEEFKAYAEKAGLTVETFAVPSTNEIASTVTVmTSKVDAIWVPIDNTIASGFPTVVSSNQSSKKPIYPSATAmVEVGGLASVVIDQHDLGVATGKmIVQVLKGAKPADTPVNVFSTGKSVINKKIAQELGITIPESVLKEAGQVI-W   1
                             |      52        62        72        82       |92       102       112       122       132   |   142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292 |     302       312       322       332       342| |
                             |     51                                     90-MSE     102-MSE                           136-MSE                                                                                        231-MSE                                 271-MSE                294-MSE                                          343 1
                            50                                                                                                                                                                                                                                                                                                             


Chain B from PDB  Type:PROTEIN  Length:289
 aligned with A0A0H2UPV6_S | A0A0H2UPV6 from UniProtKB/TrEMBL  Length:344

    Alignment length:293
                                    61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341   
         A0A0H2UPV6_S    52 KIGVLQFVSHPSLDLIYKGIQDGLAEEGYKDDQVKIDFMNSEGDQSKVATMSKQLVANGNDLVVGIATPAAQGLASATKDLPVIMAAITDPIGANLVKDLKKPGGNVTGVSDHNPAQQQVELIKALTPNVKTIGALYSSSEDNSKTQVEEFKAYAEKAGLTVETFAVPSTNEIASTVTVMTSKVDAIWVPIDNTIASGFPTVVSSNQSSKKPIYPSATAMVEVGGLASVVIDQHDLGVATGKMIVQVLKGAKPADTPVNVFSTGKSVINKKIAQELGITIPESVLKEAGQVIE 344
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3lftB01 B:52-164,B:283-314  [    code=3.40.50.2300, no name defined]                                             3lftB02 B:165-282,B:315-343  [code=3.40.50.2300, no name defined]                                                     3lftB01 B:52-164,B:283-314      3lftB02 B:165-282,B:315-343  - CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhhhhhh..----..eeeee...hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhh....eeee....................eeeeee..hhhhhhhhhhhhh....eeeeeee..hhhhhhhhhhhhhhhhhh..eeeeeee.hhhhhhhhhhhhhh...eeee..hhhhhhhhhhhhhhh......eee.hhhhhhh...eeee.hhhhhhhhhhhhhhhhh...hhhhh..eee...eeeeehhhhhhhh...hhhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lft B  52 KIGVLQFVSHPSLDLIYKGIQDGLAEEGY----VKIDFmNSEGDQSKVATmSKQLVANGNDLVVGIATPAAQGLASATKDLPVImAAITDPIGANLVKDLKKPGGNVTGVSDHNPAQQQVELIKALTPNVKTIGALYSSSEDNSKTQVEEFKAYAEKAGLTVETFAVPSTNEIASTVTVmTSKVDAIWVPIDNTIASGFPTVVSSNQSSKKPIYPSATAmVEVGGLASVVIDQHDLGVATGKmIVQVLKGAKPADTPVNVFSTGKSVINKKIAQELGITIPESVLKEAGQVIW   2
                                    61        71        |-   |    91       101|      111       121       131    |  141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291  |    301       311       321       331       341 ||
                                                       80   85    |         102-MSE                           136-MSE                                                                                        231-MSE                                 271-MSE                294-MSE                                          343|
                                                                 90-MSE                                                                                                                                                                                                                                                         2
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3LFT)

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3LFT)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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