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(-) Description

Title :  CRYSTAL STRUCTURE OF SUSD-LIKE CARBOHYDRATE BINDING PROTEIN (YP_001298396.1) FROM BACTEROIDES VULGATUS ATCC 8482 AT 1.70 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  15 Jan 10  (Deposition) - 09 Feb 10  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Susd-Like Carbohydrate Binding Protein, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Susd-Like Carbohydrate Binding Protein (Yp_001298396. 1) From Bacteroides Vulgatus Atcc 8482 At 1. 7 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SUSD-LIKE CARBOHYDRATE BINDING PROTEIN
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidSPEEDET
    Expression System StrainHK100
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentSEQUENCE DATABASE RESIDUES 23-516
    GeneBVU_1083
    Organism ScientificBACTEROIDES VULGATUS
    Organism Taxid435590
    StrainATCC 8482 / DSM 1447 / NCTC 11154
    SynonymPUTATIVE OUTER MEMBRANE PROTEIN, PROBABLY INVOLVED IN NUTRIENT BINDING

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 20)

Asymmetric/Biological Unit (3, 20)
No.NameCountTypeFull Name
11PE12Ligand/IonPENTAETHYLENE GLYCOL
22PE1Ligand/IonNONAETHYLENE GLYCOL
3MSE7Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWARE1PE A:2 , 1PE A:3 , ALA A:252 , LYS A:253 , ASP A:254 , ASN A:255 , HOH A:835BINDING SITE FOR RESIDUE 1PE A 1
02AC2SOFTWARE1PE A:1 , 1PE A:3 , 1PE A:11 , ASN A:255 , TYR A:371 , ASP A:392 , THR A:395 , HOH A:527 , HOH A:596BINDING SITE FOR RESIDUE 1PE A 2
03AC3SOFTWARE1PE A:1 , 1PE A:2 , LEU A:251 , ASN A:255 , TYR A:371 , ASP A:392 , HOH A:530BINDING SITE FOR RESIDUE 1PE A 3
04AC4SOFTWARELYS A:218 , ASP A:271 , PRO A:484 , ASN A:485 , HOH A:881 , HOH A:884BINDING SITE FOR RESIDUE 2PE A 4
05AC5SOFTWARETYR A:112 , TYR A:173 , SER A:496 , GLU A:497 , HOH A:1000BINDING SITE FOR RESIDUE 1PE A 5
06AC6SOFTWAREASN A:443 , ALA A:444 , HOH A:843BINDING SITE FOR RESIDUE 1PE A 6
07AC7SOFTWARELEU A:206 , GLU A:207 , ASN A:223 , LYS A:253 , HOH A:911BINDING SITE FOR RESIDUE 1PE A 7
08AC8SOFTWARETYR A:312BINDING SITE FOR RESIDUE 1PE A 8
09AC9SOFTWAREILE A:161 , ALA A:237 , ARG A:238BINDING SITE FOR RESIDUE 1PE A 9
10BC1SOFTWAREASN A:388BINDING SITE FOR RESIDUE 1PE A 10
11BC2SOFTWARE1PE A:2 , HOH A:747BINDING SITE FOR RESIDUE 1PE A 11
12BC3SOFTWAREPHE A:37 , GLY A:38 , LYS A:39 , PHE A:58 , ASN A:59 , LEU A:109 , HOH A:872BINDING SITE FOR RESIDUE 1PE A 12
13BC4SOFTWAREASN A:200 , GLU A:207BINDING SITE FOR RESIDUE 1PE A 13

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3LEW)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gly A:448 -Pro A:449

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3LEW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3LEW)

(-) Exons   (0, 0)

(no "Exon" information available for 3LEW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:476
 aligned with A6KZB0_BACV8 | A6KZB0 from UniProtKB/TrEMBL  Length:516

    Alignment length:480
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516
         A6KZB0_BACV8    37 FGKTGDAEKVLNGGWNYLMETFNSYANPGYGAMLRANDAMGSDVVLNSKYGFRTHNEFSAIYGKGGTNTLSWLLAYRVINDCNGVLDNIDAAEGTQADRNRIKGQALALRGFLYLHLASCYSFAIDKDPDAVCAPIYTQSTDETIAAEGKPASSVSEVYAQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLAKDNYLMTESEYKAGFNSVDNKEWIWGHAQTNDQSNASYQFHYLDTTTKGSYYYSFNVDPYFRDLFEDGDYRKEMLFWATDPGADVESAAYVWMRNSKFRFRDIENQLGDIVLMRVAEIYLINAEAKAHLNDPDAINKLNDLKTARGAKTIHTNLSQQDLLETIWLERRKELWGEGFSLIDIIRNQQTVVRNAYPEGPIDYIYTDENGQTHTLKKKTQGHRFFNFPDKSAFCPNSKYYLYRITDSEELANKNLYKDHPKLSIYTK 516
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains SusD-like_3-3lewA02 A:37-235                                                                                                                                                                           -------------------------------------SusD-3lewA01 A:273-510                                                                                                                                                                                                                        ------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh...eee.....hhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh..........eee.......-hhhhhh....eehhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh....hhhhhh..........eeeee.......hhhhhhhhhh..........eee.hhhhhhh.....hhh.eeee...........eeeeee..............eeeeehhhhhhhhhhhhhhh...hhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhh....hhhhhhhhh.............eeeee..---..eeeeeeee................hhhhh...hhhhhhhh............... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3lew A  37 FGKTGDAEKVLNGGWNYLmETFNSYANPGYGAmLRANDAmGSDVVLNSKYGFRTHNEFSAIYGKGGTNTLSWLLAYRVINDCNGVLDNIDAAEGTQADRNRIKGQALALRGFLYLHLASCYSFAIDKDPDAVCAPIYTQST-ETIAAEGKPASSVSEVYAQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLAKDNYLmTESEYKAGFNSVDNKEWIWGHAQTNDQSNASYQFHYLDTTTKGSYYYSFNVDPYFRDLFEDGDYRKEmLFWATDPGADVESAAYVWmRNSKFRFRDIENQLGDIVLmRVAEIYLINAEAKAHLNDPDAINKLNDLKTARGAKTIHTNLSQQDLLETIWLERRKELWGEGFSLIDIIRNQQTVVRNAYPEGPIDYIYTD---QTHTLKKKTQGHRFFNFPDKSAFCPNSKYYLYRITDSEELANKNLYKDHPKLSIYTK 516
                                    46        56        66  |     76        86        96       106       116       126       136       146       156       166       176| |    186       196       206       216       226       236       246       256 |     266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456   |   466       476       486       496       506       516
                                             55-MSE        69-MSE 76-MSE                                                                                              177 |                                                                            258-MSE                                                             326-MSE            345-MSE             365-MSE                                                                                    456 460                                                        
                                                                                                                                                                        179                                                                                                                                                                                                                                                                                                                                                 

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3LEW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3LEW)

(-) Pfam Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Clan: TPR (230)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3LEW)

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