3LBF - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF PROTEIN L-ISOASPARTYL METHYLTRANSFERASE FROM ESCHERICHIA COLI

Authors :   P. Fang, X. Li, J. Wang, L. Niu, M. Teng

Date :   08 Jan 10 (Deposition) - 08 Sep 10 (Release) - 05 Mar 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Modified Rossman-Type Fold, Methyltransferase, S-Adenosyl-L- Methionine, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. Fang, X. Li, J. Wang, L. Xing, Y. Gao, L. Niu, M. Teng
Crystal Structure Of The Protein L-Isoaspartyl Methyltransferase From Escherichia Coli
Cell Biochem. Biophys. V. 58 163 2010
PubMed-ID: 20857228 | Reference-DOI: 10.1007/S12013-010-9103-2

Molecule 1 - PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE
	Chains	:	A, B, C, D
	EC Number	:	2.1.1.77
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21
	Expression System Taxid	:	562
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	83333
	Strain	:	K-12
	Synonym	:	PROTEIN-BETA-ASPARTATE METHYLTRANSFERASE, PIMT, PROTEIN L- ISOASPARTYL METHYLTRANSFERASE, L-ISOASPARTYL PROTEIN CARBOXYL METHYLTRANSFERASE

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 11)

No.	Name	Count	Type	Full Name
1	GOL	1	Ligand/Ion	GLYCEROL
2	PO4	6	Ligand/Ion	PHOSPHATE ION
3	SAH	4	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE

Biological Unit 1 (3, 5)

No.	Name	Count	Type	Full Name
1	GOL	1	Ligand/Ion	GLYCEROL
2	PO4	3	Ligand/Ion	PHOSPHATE ION
3	SAH	1	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE

Biological Unit 2 (2, 3)

No.	Name	Count	Type	Full Name
1	GOL	-1	Ligand/Ion	GLYCEROL
2	PO4	2	Ligand/Ion	PHOSPHATE ION
3	SAH	1	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE

Biological Unit 3 (2, 2)

No.	Name	Count	Type	Full Name
1	GOL	-1	Ligand/Ion	GLYCEROL
2	PO4	1	Ligand/Ion	PHOSPHATE ION
3	SAH	1	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE

Biological Unit 4 (1, 1)

No.	Name	Count	Type	Full Name
1	GOL	-1	Ligand/Ion	GLYCEROL
2	PO4	-1	Ligand/Ion	PHOSPHATE ION
3	SAH	1	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE

Asymmetric Unit (11, 11)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLN A:56 , THR A:57 , GLY A:83 , THR A:84 , GLY A:85 , SER A:86 , TYR A:88 , GLN A:89 , VAL A:103 , GLU A:104 , ARG A:105 , ILE A:106 , LEU A:109 , GLY A:130 , ASP A:131 , GLY A:132 , THR A:148 , LEU A:202 , VAL A:203 , HOH A:219 , HOH A:236 , HOH A:251 , HOH A:272 , HOH A:273	BINDING SITE FOR RESIDUE SAH A 300
02	AC2	SOFTWARE	LYS A:107 , HIS A:129 , HOH A:234 , SER C:126 , ARG C:139	BINDING SITE FOR RESIDUE PO4 A 209
03	AC3	SOFTWARE	PO4 A:211 , HOH A:260 , HOH A:429 , LYS B:107 , HIS B:129 , PO4 B:210 , TRP C:111	BINDING SITE FOR RESIDUE PO4 A 210
04	AC4	SOFTWARE	HIS A:99 , SER A:126 , ARG A:139 , PO4 A:210 , LYS B:107 , GLN B:110 , ARG B:128 , HIS B:129 , HOH B:221 , HOH B:246 , HOH B:380	BINDING SITE FOR RESIDUE PO4 A 211
05	AC5	SOFTWARE	PRO A:152 , GLU A:153 , HOH A:223 , HOH A:285 , TRP B:133 , PRO B:155 , THR B:156 , ALA B:157	BINDING SITE FOR RESIDUE GOL A 212
06	AC6	SOFTWARE	GLN B:56 , THR B:57 , GLY B:83 , THR B:84 , GLY B:85 , SER B:86 , TYR B:88 , GLN B:89 , VAL B:103 , GLU B:104 , ARG B:105 , ILE B:106 , LEU B:109 , GLY B:130 , ASP B:131 , GLY B:132 , THR B:148 , PRO B:201 , LEU B:202 , VAL B:203 , HOH B:212 , HOH B:215 , HOH B:250 , HOH B:252 , HOH B:288	BINDING SITE FOR RESIDUE SAH B 300
07	AC7	SOFTWARE	TRP A:136 , ALA A:138 , ARG A:139 , LYS B:107 , ARG B:114 , PO4 B:210 , LYS C:107 , PO4 C:209	BINDING SITE FOR RESIDUE PO4 B 209
08	AC8	SOFTWARE	PO4 A:210 , LYS B:107 , PO4 B:209 , LYS C:107 , ARG C:114	BINDING SITE FOR RESIDUE PO4 B 210
09	AC9	SOFTWARE	GLN C:56 , THR C:57 , GLY C:83 , THR C:84 , GLY C:85 , SER C:86 , TYR C:88 , GLN C:89 , VAL C:103 , GLU C:104 , ARG C:105 , ILE C:106 , LEU C:109 , GLY C:130 , ASP C:131 , GLY C:132 , THR C:148 , VAL C:200 , PRO C:201 , LEU C:202 , VAL C:203 , HOH C:212 , HOH C:214 , HOH C:221 , HOH C:243	BINDING SITE FOR RESIDUE SAH C 300
10	BC1	SOFTWARE	GLN D:56 , GLY D:83 , THR D:84 , GLY D:85 , SER D:86 , TYR D:88 , GLN D:89 , GLU D:104 , ARG D:105 , ILE D:106 , GLY D:130 , ASP D:131 , GLY D:132 , TRP D:133 , THR D:148 , VAL D:200 , LEU D:202 , VAL D:203 , HOH D:237	BINDING SITE FOR RESIDUE SAH D 300
11	BC2	SOFTWARE	ARG A:128 , TRP A:136 , ALA A:138 , HOH A:270 , TRP B:111 , PO4 B:209 , LYS C:107 , HIS C:129 , HOH C:215 , HOH C:397	BINDING SITE FOR RESIDUE PO4 C 209

(no "SS Bond" information available for 3LBF)

Asymmetric Unit

No.	Residues
1	Ala A:140	-	Pro A:141
2	Ala B:140	-	Pro B:141
3	Ala C:140	-	Pro C:141
4	Ala D:140	-	Pro D:141

(no "SAP(SNP)/Variant" information available for 3LBF)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PCMT	PS01279	Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature.	PIMT_ECOLI	130-145	4	A:130-145 B:130-145 C:130-145 D:130-145

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PCMT	PS01279	Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature.	PIMT_ECOLI	130-145	1	A:130-145 - - -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PCMT	PS01279	Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature.	PIMT_ECOLI	130-145	1	- B:130-145 - -

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PCMT	PS01279	Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature.	PIMT_ECOLI	130-145	1	- - C:130-145 -

Biological Unit 4 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PCMT	PS01279	Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature.	PIMT_ECOLI	130-145	1	- - - D:130-145

(no "Exon" information available for 3LBF)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:207
 aligned with PIMT_ECOLI | P0A7A5 from UniProtKB/Swiss-Prot  Length:208

    Alignment length:207
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       
           PIMT_ECOLI     2 VSRRVQALLDQLRAQGIQDEQVLNALAAVPREKFVDEAFEQKAWDNIALPIGQGQTISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVGEEHQYLKRVRRRGGEFIIDTVEAVRFVPLVKGELA 208
               SCOP domains d3lbfa_ A: automated matches                                                                                                                                                                                    SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh.....ee.....ee.hhhhhhhhhhhh......eeeee....hhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhh....eeeee.hhhhhhhhhh.eeeeee........hhhhhheeeeeeeeeee.....eeeeeeee..eeeeeeeee............ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------PCMT            --------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lbf A   2 VSRRVQALLDQLRAQGIQDEQVLNALAAVPREKFVDEAFEQKAWDNIALPIGQGQTISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVGEEHQYLKRVRRRGGEFIIDTVEAVRFVPLVKGELA 208
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201

Chain B from PDB  Type:PROTEIN  Length:207
 aligned with PIMT_ECOLI | P0A7A5 from UniProtKB/Swiss-Prot  Length:208

    Alignment length:207
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       
           PIMT_ECOLI     2 VSRRVQALLDQLRAQGIQDEQVLNALAAVPREKFVDEAFEQKAWDNIALPIGQGQTISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVGEEHQYLKRVRRRGGEFIIDTVEAVRFVPLVKGELA 208
               SCOP domains d3lbfb_ B: automated matches                                                                                                                                                                                    SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.....eeee..eee.hhhhhhhhhhhh......eeeee....hhhhhhhhh...eeeeee.hhhhhhhhhhhhhhh....eeeee.hhhhhhhhhh.eeeeee.......hhhhhhheeeeeeeeeee....eeeeeeeee..eeeeeeeeee........... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------PCMT            --------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lbf B   2 VSRRVQALLDQLRAQGIQDEQVLNALAAVPREKFVDEAFEQKAWDNIALPIGQGQTISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVGEEHQYLKRVRRRGGEFIIDTVEAVRFVPLVKGELA 208
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201

Chain C from PDB  Type:PROTEIN  Length:207
 aligned with PIMT_ECOLI | P0A7A5 from UniProtKB/Swiss-Prot  Length:208

    Alignment length:207
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       
           PIMT_ECOLI     2 VSRRVQALLDQLRAQGIQDEQVLNALAAVPREKFVDEAFEQKAWDNIALPIGQGQTISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVGEEHQYLKRVRRRGGEFIIDTVEAVRFVPLVKGELA 208
               SCOP domains d3lbfc_ C: automated matches                                                                                                                                                                                    SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhh.....ee.hhh.ee.hhhhhhhhhhh.......eeeee....hhhhhhhhh...eeeeee.hhhhhhhhhhhhhhh....eeeee.hhhhhhhhhh.eeeeee.......hhhhhhheeeeeeeeeee....eeeeeeeee..eeeeeeeeee........... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------PCMT            --------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lbf C   2 VSRRVQALLDQLRAQGIQDEQVLNALAAVPREKFVDEAFEQKAWDNIALPIGQGQTISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVGEEHQYLKRVRRRGGEFIIDTVEAVRFVPLVKGELA 208
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201

Chain D from PDB  Type:PROTEIN  Length:196
 aligned with PIMT_ECOLI | P0A7A5 from UniProtKB/Swiss-Prot  Length:208

    Alignment length:206
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202      
           PIMT_ECOLI     3 SRRVQALLDQLRAQGIQDEQVLNALAAVPREKFVDEAFEQKAWDNIALPIGQGQTISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVGEEHQYLKRVRRRGGEFIIDTVEAVRFVPLVKGELA 208
               SCOP domains d3lbfd_ D: automated matches                                                                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -PCMT-3lbfD01 D:4-207                                                                                                                                                                                        - Pfam domains (1)
           Pfam domains (2) -PCMT-3lbfD02 D:4-207                                                                                                                                                                                        - Pfam domains (2)
           Pfam domains (3) -PCMT-3lbfD03 D:4-207                                                                                                                                                                                        - Pfam domains (3)
           Pfam domains (4) -PCMT-3lbfD04 D:4-207                                                                                                                                                                                        - Pfam domains (4)
         Sec.struct. author .hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh--------........--......hhhhhhhhhhhh.......eeee....hhhhhhhhh....eeeee.hhhhhhhhhhhhhhh....eeeee.hhhhhhhhhh.eeeeee.......hhhhhhheeeeeeeeeee....eeeeeeeee..eeeeeeeeee........... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------PCMT            --------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lbf D   3 SRRVQALLDQLRAQGIQDEQVLNALAAVPREKF--------AWDNIALP--QGQTISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVGEEHQYLKRVRRRGGEFIIDTVEAVRFVPLVKGELA 208
                                    12        22        32  |      - |      |- |      62        72        82        92       102       112       122       132       142       152       162       172       182       192       202      
                                                           35       44     51 54

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: S-adenosyl-L-methionine-dependent methyltransferases (533)

Superfamily: S-adenosyl-L-methionine-dependent methyltransferases (533)

Family: automated matches (94)

Protein domain: automated matches (94)

Escherichia coli K-12 [TaxId: 83333] (5)

1a	d3lbfa_	A:
1b	d3lbfb_	B:
1c	d3lbfc_	C:
1d	d3lbfd_	D:

(no "CATH Domain" information available for 3LBF)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: NADP_Rossmann (1239)

Family: PCMT (7)

Escherichia coli (strain K12) (1)

1a	PCMT-3lbfD01	D:4-207
1b	PCMT-3lbfD02	D:4-207
1c	PCMT-3lbfD03	D:4-207
1d	PCMT-3lbfD04	D:4-207

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (PIMT_ECOLI | P0A7A5)

molecular function
	GO:0008168	methyltransferase activity	Catalysis of the transfer of a methyl group to an acceptor molecule.
	GO:0004719	protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	Catalysis of the reaction: S-adenosyl-L-methionine + protein L-beta-aspartate = S-adenosyl-L-homocysteine + protein L-beta-aspartate methyl ester.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0006464	cellular protein modification process	The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications) occurring at the level of an individual cell. Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).
	GO:0032259	methylation	The process in which a methyl group is covalently attached to a molecule.
	GO:0006479	protein methylation	The addition of a methyl group to a protein amino acid. A methyl group is derived from methane by the removal of a hydrogen atom.
	GO:0030091	protein repair	The process of restoring a protein to its original state after damage by such things as oxidation or spontaneous decomposition of residues.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		GOL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		PO4	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		SAH	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
		BC1	[ RasMol ]	+environment [ RasMol ]
		BC2	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Ala A:140 - Pro A:141	[ RasMol ]
		Ala B:140 - Pro B:141	[ RasMol ]
		Ala C:140 - Pro C:141	[ RasMol ]
		Ala D:140 - Pro D:141	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]
		Biological Unit 4	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format \| Biol. Unit 3 PNG format \| Biol. Unit 4 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	3lbf
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	PIMT_ECOLI \| P0A7A5
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	2.1.1.77
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	PIMT_ECOLI \| P0A7A5
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

(no "Entries Sharing at Least One Protein Chain" available for 3LBF)

(no "Related Entries Specified in the PDB File" available for 3LBF)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 11)

Sites (11, 11)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 4)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 4)

CATH Domains (0, 0)

Pfam Domains (1, 4)

Gene Ontology (8, 8)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File