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(-) Description

Title :  ALPHA-HELICAL BARREL FORMED BY THE DECAMER OF THE ZINC RESISTANCE-ASSOCIATED PROTEIN (STM4172) FROM SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TYPHIMURIUM STR. LT2
 
Authors :  E. V. Filippova, G. Minasov, L. Shuvalova, J. Winsor, I. Dubrovska, W. F. Anderson, Center For Structural Genomics Of Infectious D (Csgid)
Date :  07 Jan 10  (Deposition) - 19 Jan 10  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J
Keywords :  Zinc Resistance-Associated Protein, Salmonella Typhimurium Lt2, Zrap, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. V. Filippova, G. Minasov, L. Shuvalova, J. Winsor, I. Dubrovska, L. Papazisi, W. F. Anderson
Alpha-Helical Barrel Formed By The Decamer Of The Zinc Resistance-Associated Protein (Stm4172) From Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ZINC RESISTANCE-ASSOCIATED PROTEIN
    Chains: A, B, C, D, E, F, G, H, I, J
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3)-MAGIC
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: STM4172, STMF1.61, ZRAP
    Organism Scientific: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TYPHIMURIUM
    Organism Taxid: 90371
    Strain: LT2

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric/Biological Unit : ABCDEFGHIJ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3LAY)

(-) Sites  (0, 0)

(no "Site" information available for 3LAY)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3LAY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3LAY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3LAY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3LAY)

(-) Exons   (0, 0)

(no "Exon" information available for 3LAY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:79
 aligned with ZRAP_SALTY | Q9L9I0 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:79
                                    53        63        73        83        93       103       113         
           ZRAP_SALTY    44 LTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQAGIP 122
               SCOP domains ------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                 3lay A  44 LTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQAGIP 122
                                    53        63        73        83        93       103       113         


Chain B from PDB  Type:PROTEIN  Length:79
 aligned with ZRAP_SALTY | Q9L9I0 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:79
                                    53        63        73        83        93       103       113         
           ZRAP_SALTY    44 LTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQAGIP 122
               SCOP domains ------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                 3lay B  44 LTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQAGIP 122
                                    53        63        73        83        93       103       113         


Chain C from PDB  Type:PROTEIN  Length:79
 aligned with ZRAP_SALTY | Q9L9I0 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:79
                                    53        63        73        83        93       103       113         
           ZRAP_SALTY    44 LTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQAGIP 122
               SCOP domains ------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                 3lay C  44 LTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQAGIP 122
                                    53        63        73        83        93       103       113         


Chain D from PDB  Type:PROTEIN  Length:78
 aligned with ZRAP_SALTY | Q9L9I0 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:78
                                    54        64        74        84        94       104       114        
           ZRAP_SALTY    45 TTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQAGIP 122
               SCOP domains ------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------ Transcript
                 3lay D  45 TTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQAGIP 122
                                    54        64        74        84        94       104       114        


Chain E from PDB  Type:PROTEIN  Length:78
 aligned with ZRAP_SALTY | Q9L9I0 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:78
                                    54        64        74        84        94       104       114        
           ZRAP_SALTY    45 TTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQAGIP 122
               SCOP domains ------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------ Transcript
                 3lay E  45 TTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQAGIP 122
                                    54        64        74        84        94       104       114        


Chain F from PDB  Type:PROTEIN  Length:78
 aligned with ZRAP_SALTY | Q9L9I0 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:78
                                    53        63        73        83        93       103       113        
           ZRAP_SALTY    44 LTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQAGI 121
               SCOP domains ------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------ Transcript
                 3lay F  44 LTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQAGI 121
                                    53        63        73        83        93       103       113        


Chain G from PDB  Type:PROTEIN  Length:77
 aligned with ZRAP_SALTY | Q9L9I0 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:77
                                    55        65        75        85        95       105       115       
           ZRAP_SALTY    46 TEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQAGIP 122
               SCOP domains ----------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                 3lay G  46 TEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQAGIP 122
                                    55        65        75        85        95       105       115       


Chain H from PDB  Type:PROTEIN  Length:80
 aligned with ZRAP_SALTY | Q9L9I0 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:80
                                    52        62        72        82        92       102       112       122
           ZRAP_SALTY    43 PLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQAGIP 122
               SCOP domains -------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------- Transcript
                 3lay H  43 PLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQAGIP 122
                                    52        62        72        82        92       102       112       122


Chain I from PDB  Type:PROTEIN  Length:78
 aligned with ZRAP_SALTY | Q9L9I0 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:78
                                    53        63        73        83        93       103       113        
           ZRAP_SALTY    44 LTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQAGI 121
               SCOP domains ------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------ Transcript
                 3lay I  44 LTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQAGI 121
                                    53        63        73        83        93       103       113        


Chain J from PDB  Type:PROTEIN  Length:81
 aligned with ZRAP_SALTY | Q9L9I0 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:81
                                    52        62        72        82        92       102       112       122 
           ZRAP_SALTY    43 PLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQAGIPR 123
               SCOP domains --------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) Metal_resist-3layJ01 J:43-123                                                     Pfam domains (1)
           Pfam domains (2) Metal_resist-3layJ02 J:43-123                                                     Pfam domains (2)
           Pfam domains (3) Metal_resist-3layJ03 J:43-123                                                     Pfam domains (3)
           Pfam domains (4) Metal_resist-3layJ04 J:43-123                                                     Pfam domains (4)
           Pfam domains (5) Metal_resist-3layJ05 J:43-123                                                     Pfam domains (5)
           Pfam domains (6) Metal_resist-3layJ06 J:43-123                                                     Pfam domains (6)
           Pfam domains (7) Metal_resist-3layJ07 J:43-123                                                     Pfam domains (7)
           Pfam domains (8) Metal_resist-3layJ08 J:43-123                                                     Pfam domains (8)
           Pfam domains (9) Metal_resist-3layJ09 J:43-123                                                     Pfam domains (9)
          Pfam domains (10) Metal_resist-3layJ10 J:43-123                                                     Pfam domains (10)
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                 3lay J  43 PLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQAGIPR 123
                                    52        62        72        82        92       102       112       122
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3LAY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3LAY)

(-) Pfam Domains  (1, 10)

Asymmetric/Biological Unit
(-)
Clan: LTXXQ-like (2)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J   (ZRAP_SALTY | Q9L9I0)
molecular function
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
cellular component
    GO:0042597    periplasmic space    The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

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