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(-) Description

Title :  THE CRYSTAL STRUCTURE OF A DOMAIN OF PHENYLACETATE-COENZYME A LIGASE FROM BACTEROIDES VULGATUS ATCC 8482
 
Authors :  K. Tan, R. Wu, G. Cobb, A. Joachimiak, Midwest Center For Structural Genomics (Mcsg)
Date :  07 Jan 10  (Deposition) - 19 Jan 10  (Release) - 02 Feb 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.43
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Tan, R. Wu, G. Cobb, A. Joachimiak
The Crystal Structure Of A Domain Of Phenylacetate-Coenzyme A Ligase From Bacteroides Vulgatus Atcc 8482
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PHENYLACETATE-COENZYME A LIGASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG19
    Expression System Strain: PPK1037
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 327-432
    Gene: BACTEROIDES VULGATUS, BVU_1668
    Organism Scientific: BACTEROIDES VULGATUS
    Organism Taxid: 435590
    Strain: ATCC 8482

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3LAX)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3LAX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3LAX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 3LAX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:106
 aligned with A6L0Y5_BACV8 | A6L0Y5 from UniProtKB/TrEMBL  Length:432

    Alignment length:109
                                   333       343       353       363       373       383       393       403       413       423         
         A6L0Y5_BACV8   324 GRSDDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILVTPRVKLVPKGALPKSEGKAVRVKDLRKTF 432
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3laxA00 A:324-432  [code=3.30.300.30, no name defined]                                                        CATH domains
               Pfam domains ---AMP-binding-3laxA01       -------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh.eee..eeehhhhhhhhhhh...eeeeeeeeeeee..eeeeeeeeee......hhhhhhhhhhhhhhhhhhhhh...eeeee........---...eee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 3lax A 324 SNADDmIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEmTVEVELSQLFTDDYGRLQALTREITRQLKDEILVTPRVKLVPKGALPKS---AVRVKDLRKTF 432
                                 | 333       343       353       363     | 373       383       393       403       413    |  423         
                                 |                                     369-MSE                                          418 422          
                               329-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3LAX)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: ANL (32)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (A6L0Y5_BACV8 | A6L0Y5)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016874    ligase activity    Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0047475    phenylacetate-CoA ligase activity    Catalysis of the reaction: ATP + CoA + phenylacetate = AMP + diphosphate + H(+) + phenylacetyl-CoA.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0010124    phenylacetate catabolic process    The chemical reactions and pathways resulting in the breakdown of phenylacetate.

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(-) Related Entries Specified in the PDB File

3gxs THIS DEPOSIT IS TO REPLACE 3GXS. RELATED ID: APC62324.1 RELATED DB: TARGETDB