3L6E - JenaLib

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Title :   CRYSTAL STRUCTURE OF PUTATIVE SHORT CHAIN DEHYDROGENASE/REDUCTASE FAMILY OXIDOREDUCTASE FROM AEROMONAS HYDROPHILA SUBSP. HYDROPHILA ATCC 7966

Authors :   V. N. Malashkevich, Y. Patskovsky, R. Toro, J. M. Sauder, S. K. Burley, S New York Sgx Research Center For Structural Genomics (Nysgx

Date :   23 Dec 09 (Deposition) - 09 Feb 10 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: A,B  (2x)
Biol. Unit 3: A  (2x)
Biol. Unit 4: B  (2x)

Keywords :   Structural Genomics, Psi-2, Protein Structure Initiative, Oxidoreductase, New York Sgx Research Center For Structural Genomics, Nysgxrc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   V. N. Malashkevich, Y. Patskovsky, R. Toro, J. M. Sauder, S. K. Burley, S. C. Almo
Crystal Structure Of Putative Short Chain Dehydrogenase/Reductase Family Oxidoreductase From Aeromona Hydrophila Subsp. Hydrophila Atcc 7966
To Be Published
PubMed: search

Molecule 1 - OXIDOREDUCTASE, SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	BC-PSGX3(BC)
	Expression System Strain	:	BL21(DE3)CODON+RIL
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	ABK37325.1, AHA_3651
	Organism Scientific	:	AEROMONAS HYDROPHILA SUBSP. HYDROPHILA
	Organism Taxid	:	380703
	Strain	:	ATCC 7966

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (2x)	:	A	B
Biological Unit 3 (2x)	:	A
Biological Unit 4 (2x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 14)

No.	Name	Count	Type	Full Name
1	MSE	12	Mod. Amino Acid	SELENOMETHIONINE
2	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 1 (2, 14)

No.	Name	Count	Type	Full Name
1	MSE	12	Mod. Amino Acid	SELENOMETHIONINE
2	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 2 (2, 28)

No.	Name	Count	Type	Full Name
1	MSE	24	Mod. Amino Acid	SELENOMETHIONINE
2	SO4	4	Ligand/Ion	SULFATE ION

Biological Unit 3 (2, 14)

No.	Name	Count	Type	Full Name
1	MSE	12	Mod. Amino Acid	SELENOMETHIONINE
2	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 4 (2, 14)

No.	Name	Count	Type	Full Name
1	MSE	12	Mod. Amino Acid	SELENOMETHIONINE
2	SO4	2	Ligand/Ion	SULFATE ION

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:10 , ALA A:11 , GLY A:12 , GLY A:34 , ARG A:35 , ARG A:36 , HOH A:250	BINDING SITE FOR RESIDUE SO4 A 500
2	AC2	SOFTWARE	GLY B:10 , ALA B:11 , GLY B:12 , SER B:13 , GLY B:34 , ARG B:35 , ARG B:36	BINDING SITE FOR RESIDUE SO4 B 500

(no "SS Bond" information available for 3L6E)

(no "Cis Peptide Bond" information available for 3L6E)

(no "SAP(SNP)/Variant" information available for 3L6E)

(no "PROSITE Motif" information available for 3L6E)

(no "Exon" information available for 3L6E)

Asymmetric Unit

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	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:210
 aligned with A0KPA6_AERHH | A0KPA6 from UniProtKB/TrEMBL  Length:225

    Alignment length:227
                                                                                                                                                                                                                                                          225  
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220    |  
         A0KPA6_AERHH     1 MGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQEQEELLGKAVIGIAADLAHHEEVDVAFAAAVEWGGLPELVLHCAGVGEFGPVGVYTAEQIRRVVESNLISTILVAQQTVRLIGDKGGVLANVLSSAAQVGKANESLYCASKWGMRGFLESLRAELKGSPLRLVNLYPSGIRSEFWDNSDHVDSSGFMTPEDAAAYMLDALEARSSCHVTDLFIGRN--   -
               SCOP domains d3l6ea_ A: automated matches                                                                                                                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh...eeeee....------..hhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee..ee......hhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeeee....-----------..hhhhhhhhhhhhh.....eeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3l6e A   3 LGHIIVTGAGSGLGRALTIGLVERGHQVSmmGRRYQRLQQQELLLGNAVIGIVADLAHHEDVDVAFAAAVEWGGLPELVLHCAGTG------VYTAEQIRRVmESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQVGKANESLYCASKWGmRGFLESLRAELKDSPLRLVNLYPSGIRSEF-----------FmTPEDAAAYmLDALEARSSCHVTDLFIGRNEG 229
                                    12        22        32|       42        52        62        72        82     |   -  |    102  |    112       122       132       142       152  |    162       172       182  |      -    || 202    |  212       222       
                                                        32-MSE                                                  88     95       105-MSE                                           155-MSE                       185         197|      207-MSE                  
                                                         33-MSE                                                                                                                                                              198-MSE

Chain B from PDB  Type:PROTEIN  Length:210
 aligned with A0KPA6_AERHH | A0KPA6 from UniProtKB/TrEMBL  Length:225

    Alignment length:226
                                                                                                                                                                                                                                                          225 
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220    | 
         A0KPA6_AERHH     1 MGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQEQEELLGKAVIGIAADLAHHEEVDVAFAAAVEWGGLPELVLHCAGVGEFGPVGVYTAEQIRRVVESNLISTILVAQQTVRLIGDKGGVLANVLSSAAQVGKANESLYCASKWGMRGFLESLRAELKGSPLRLVNLYPSGIRSEFWDNSDHVDSSGFMTPEDAAAYMLDALEARSSCHVTDLFIGRN-   -
               SCOP domains d3l6eb_ B: automated matches                                                                                                                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee....hhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh...eeeee......-----.....hhhhhhhhhhhhhhhhhhhhhhhh...eeeeee..ee......hhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeeee....-----------..hhhhhhhhhhhhh.....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3l6e B   3 LGHIIVTGAGSGLGRALTIGLVERGHQVSmmGRRYQRLQQQELLLGNAVIGIVADLAHHEDVDVAFAAAVEWGGLPELVLHCAGTGEF-----YTAEQIRRVmESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQVGKANESLYCASKWGmRGFLESLRAELKDSPLRLVNLYPSGIRSEF-----------FmTPEDAAAYmLDALEARSSCHVTDLFIGRNE 228
                                    12        22        32|       42        52        62        72        82       | -   |   102  |    112       122       132       142       152  |    162       172       182  |      -    || 202    |  212       222      
                                                        32-MSE                                                    90    96      105-MSE                                           155-MSE                       185         197|      207-MSE                 
                                                         33-MSE                                                                                                                                                              198-MSE

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

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Class: Alpha and beta proteins (a/b) (23833)

Fold: NAD(P)-binding Rossmann-fold domains (1604)

Superfamily: NAD(P)-binding Rossmann-fold domains (1604)

Family: automated matches (447)

Protein domain: automated matches (447)

Aeromonas hydrophila [TaxId: 380703] (1)

1a	d3l6ea_	A:
1b	d3l6eb_	B:

(no "CATH Domain" information available for 3L6E)

(no "Pfam Domain" information available for 3L6E)

Asymmetric Unit(hide GO term definitions)

Chain A,B (A0KPA6_AERHH | A0KPA6)

molecular function
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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