3L5A - JenaLib

Title :   CRYSTAL STRUCTURE OF A PROBABLE NADH-DEPENDENT FLAVIN OXIDOREDUCTASE FROM STAPHYLOCOCCUS AUREUS

Authors :   R. Lam, R. D. Gordon, J. Vodsedalek, K. P. Battaile, S. Grebemeskel, K. L V. Romanov, T. Chan, V. Mihajlovic, C. M. Thompson, J. Guthrie, E. F. Pa N. Y. Chirgadze

Date :   21 Dec 09 (Deposition) - 22 Dec 10 (Release) - 22 Dec 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.65

Chains :   Asym./Biol. Unit : A

Keywords :   Old Yellow Enzyme Family, Oye-Like Fmn-Binding Domain, Tim Barrel, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. Lam, R. D. Gordon, J. Vodsedalek, K. P. Battaile, S. Grebemeskel, K. Lam, V. Romanov, T. Chan, V. Mihajlovic, C. M. Thompson, J. Guthrie, E. F. Pai, N. Y. Chirgadze
Crystal Structure Of A Probable Nadh-Dependent Flavin Oxidoreductase From Staphylococcus Aureus
To Be Published
PubMed: search

Compounds

Molecule 1 - NADH/FLAVIN OXIDOREDUCTASE/NADH OXIDASE
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PW2
	Expression System Strain	:	BL21(DE3)CODONPLUS RIPL
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	SAURJH1_0381
	Organism Scientific	:	STAPHYLOCOCCUS AUREUS
	Organism Taxid	:	359787
	Strain	:	JH1

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 17)

Sites (3, 3)

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	SER A:20 , ASN A:21 , ASN A:52 , SER A:53 , ALA A:54 , HIS A:337 , HOH A:628 , HOH A:642	BINDING SITE FOR RESIDUE PGE A 500
2	AC2	SOFTWARE	ILE A:138 , ALA A:139 , ASP A:251 , HIS A:294 , ARG A:298 , HOH A:425 , HOH A:459 , HOH A:497 , HOH A:635	BINDING SITE FOR RESIDUE PGE A 501
3	AC3	SOFTWARE	ASN A:88 , SER A:91 , THR A:92 , GLN A:95 , PHE A:283 , GLY A:284 , ARG A:285 , HOH A:603 , HOH A:677	BINDING SITE FOR RESIDUE PGE A 502

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:381
                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhh.ee.....ee...eee..............hhhhhhhhhhh.....eeeeeeee.hhhhh.....ee..hhhhhhhhhhhhhhhhh...eeeeeee.hhhhhhhhhhhhheeee...eee.....eeeee.hhhhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhh....eeeeee...eee..eeeehhhhhhhhhhhhhhhh....eee.....hhhhh...........hhhhhhhhhhh....eee.....hhhhhhhhhhhh.eeee.hhhhhh.hhhhhhhh.hhhhh....hhhhh........hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3l5a A   1 mYRYKPLLQSIHLPNGIKISNRFVLSPmTVNASTKEGYITKADLAYAARRSNSAGmQVTGAAYIEPYGKLFEYGFNIDHDACIPGLTNmASTmKQHGSLAIIQLAHAGRFSNQAILNFGKVYGPSPmTLHSPIEHVVIAmSHEKINSIIQQYRDATLRAIKAGFDGVEISIAQRLLIQTFFSTFSNRRTDHYGADSLKNRARLCLEVmRAVQEVIDKEAPDNFILGFRATPEETRGSDLGYTIDEFNQLIDWVmDVSNIQYLAIASWGRHIYQNTSRTPGDHFGRPVNQIVYEHLAGRIPLIASGGINSPESALDALQHADmVGmSSPFVTEPDFVHKLAEQRPHDINLEFSmADLEDLAIPHAAFKDIVKmmDYGEGLKK 381
                            |       10        20       |30        40        50     |  60        70        80        90  |    100       110       120      |130       140       150       160       170       180       190       200       210       220       230       240       250   |   260       270       280       290       300       310       320 |  |  330       340       350  |    360       370 ||    380 
                            |                         28-MSE                      56-MSE                           89-MSE                               127-MSE      140-MSE                                                             208-MSE                                       254-MSE                                                             322-MSE                        353-MSE            372-MSE     
                            1-MSE                                                                                      93-MSE                                                                                                                                                                                                                                 325-MSE                                         373-MSE

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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	Cis Peptide Bonds
		Ser A:131 - Pro A:132	[ RasMol ]

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Description