3L48 - JenaLib

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Title :   CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF THE PAPC USHER

Authors :   B. A. Ford, S. J. Hultgren

Date :   18 Dec 09 (Deposition) - 02 Mar 10 (Release) - 31 Mar 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A,B,C,D,E
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: E  (1x)

Keywords :   Ig Fold, Greek Key, Cell Outer Membrane, Fimbrium, Membrane, Transmembrane, Transport, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   B. Ford, A. T. Rego, T. J. Ragan, J. Pinkner, K. Dodson, P. C. Driscoll, S. Hultgren, G. Waksman
Structural Homology Between The C-Terminal Domain Of The Papc Usher And Its Plug.
J. Bacteriol. V. 192 1824 2010
PubMed-ID: 20118254 | Reference-DOI: 10.1128/JB.01677-09

Molecule 1 - OUTER MEMBRANE USHER PROTEIN PAPC
	Chains	:	A, B, C, D, E
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PTRC99
	Expression System Strain	:	C600
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 749-836
	Gene	:	PAPC, UTI89_C4893
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	364106
	Strain	:	UTI89

		1	2	3	4	5
Asymmetric Unit	:	A	B	C	D	E
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:					E

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 2)

No.	Name	Count	Type	Full Name
1	CO	2	Ligand/Ion	COBALT (II) ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	CO	-1	Ligand/Ion	COBALT (II) ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	CO	-1	Ligand/Ion	COBALT (II) ION

Biological Unit 3 (0, 0)

No.	Name	Count	Type	Full Name
1	CO	-1	Ligand/Ion	COBALT (II) ION

Biological Unit 4 (0, 0)

No.	Name	Count	Type	Full Name
1	CO	-1	Ligand/Ion	COBALT (II) ION

Biological Unit 5 (0, 0)

No.	Name	Count	Type	Full Name
1	CO	-1	Ligand/Ion	COBALT (II) ION

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HOH A:229 , GLU A:756	BINDING SITE FOR RESIDUE CO A 2
2	AC2	SOFTWARE	HOH C:223 , GLU C:752	BINDING SITE FOR RESIDUE CO C 1

Asymmetric Unit

No.	Residues
1	A:787	-	A:805
2	B:787	-	B:805
3	C:787	-	C:805
4	D:787	-	D:805
5	E:787	-	E:805

(no "Cis Peptide Bond" information available for 3L48)

(no "SAP(SNP)/Variant" information available for 3L48)

(no "PROSITE Motif" information available for 3L48)

(no "Exon" information available for 3L48)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:81
 aligned with Q1R2W8_ECOUT | Q1R2W8 from UniProtKB/TrEMBL  Length:836

    Alignment length:81
                                   764       774       784       794       804       814       824       834 
         Q1R2W8_ECOUT   755 GKRLFAILRLADGSQPPFGASVTSEKGRELGMVADEGLAWLSGVTPGETLSVNWDGKIQCQVNVPETAISDQQLLLPCTPQ 835
               SCOP domains --------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee..........eee.....eeee.hhh.eeee.......eeeee....eeeeee........eeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                 3l48 A 728 GKRLFAILRLADGSQPPFGASVTSEKGRELGMVADEGLAWLSGVTPGETLSVNWDGKIQCQVNVPETAISDQQLLLPCTPQ 808
                                   737       747       757       767       777       787       797       807

Chain B from PDB  Type:PROTEIN  Length:80
 aligned with Q1R2W8_ECOUT | Q1R2W8 from UniProtKB/TrEMBL  Length:836

    Alignment length:80
                                   764       774       784       794       804       814       824       834
         Q1R2W8_ECOUT   755 GKRLFAILRLADGSQPPFGASVTSEKGRELGMVADEGLAWLSGVTPGETLSVNWDGKIQCQVNVPETAISDQQLLLPCTP 834
               SCOP domains -------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee..........eee.....eeee.hhh.eeeeeee....eeeeee..eeeeeee........eeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------- Transcript
                 3l48 B 728 GKRLFAILRLADGSQPPFGASVTSEKGRELGMVADEGLAWLSGVTPGETLSVNWDGKIQCQVNVPETAISDQQLLLPCTP 807
                                   737       747       757       767       777       787       797       807

Chain C from PDB  Type:PROTEIN  Length:86
 aligned with Q1R2W8_ECOUT | Q1R2W8 from UniProtKB/TrEMBL  Length:836

    Alignment length:86
                                   758       768       778       788       798       808       818       828      
         Q1R2W8_ECOUT   749 KFSVLKGKRLFAILRLADGSQPPFGASVTSEKGRELGMVADEGLAWLSGVTPGETLSVNWDGKIQCQVNVPETAISDQQLLLPCTP 834
               SCOP domains -------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeee...........eee.....eeee.hhh.eeeeeee....eeeeee..eeeeeee..........eeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------- Transcript
                 3l48 C 722 KFSVLKGKRLFAILRLADGSQPPFGASVTSEKGRELGMVADEGLAWLSGVTPGETLSVNWDGKIQCQVNVPETAISDQQLLLPCTP 807
                                   731       741       751       761       771       781       791       801

Chain D from PDB  Type:PROTEIN  Length:80
 aligned with Q1R2W8_ECOUT | Q1R2W8 from UniProtKB/TrEMBL  Length:836

    Alignment length:80
                                   764       774       784       794       804       814       824       834
         Q1R2W8_ECOUT   755 GKRLFAILRLADGSQPPFGASVTSEKGRELGMVADEGLAWLSGVTPGETLSVNWDGKIQCQVNVPETAISDQQLLLPCTP 834
               SCOP domains -------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee..........eee.....eeee.hhh.eeeeeee....eeeeee..eeeeeee........eeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------- Transcript
                 3l48 D 728 GKRLFAILRLADGSQPPFGASVTSEKGRELGMVADEGLAWLSGVTPGETLSVNWDGKIQCQVNVPETAISDQQLLLPCTP 807
                                   737       747       757       767       777       787       797       807

Chain E from PDB  Type:PROTEIN  Length:79
 aligned with Q1R2W8_ECOUT | Q1R2W8 from UniProtKB/TrEMBL  Length:836

    Alignment length:79
                                   765       775       785       795       805       815       825         
         Q1R2W8_ECOUT   756 KRLFAILRLADGSQPPFGASVTSEKGRELGMVADEGLAWLSGVTPGETLSVNWDGKIQCQVNVPETAISDQQLLLPCTP 834
               SCOP domains ------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----PapC_C-3l48E01 E:733-798                                          --------- Pfam domains (1)
           Pfam domains (2) ----PapC_C-3l48E02 E:733-798                                          --------- Pfam domains (2)
           Pfam domains (3) ----PapC_C-3l48E03 E:733-798                                          --------- Pfam domains (3)
           Pfam domains (4) ----PapC_C-3l48E04 E:733-798                                          --------- Pfam domains (4)
           Pfam domains (5) ----PapC_C-3l48E05 E:733-798                                          --------- Pfam domains (5)
         Sec.struct. author ..eeeeeee..........eee.....eeee.hhh.eeee.......eeeeee..eeeeeee........eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                 3l48 E 729 KRLFAILRLADGSQPPFGASVTSEKGRELGMVADEGLAWLSGVTPGETLSVNWDGKIQCQVNVPETAISDQQLLLPCTP 807
                                   738       748       758       768       778       788       798

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3L48)

(no "CATH Domain" information available for 3L48)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: PapC_C] (3)

Family: PapC_C (3)

Escherichia coli (strain UTI89 / UPEC) (1)

1a	PapC_C-3l48E01	E:733-798
1b	PapC_C-3l48E02	E:733-798
1c	PapC_C-3l48E03	E:733-798
1d	PapC_C-3l48E04	E:733-798
1e	PapC_C-3l48E05	E:733-798

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E (Q1R2W8_ECOUT | Q1R2W8)

molecular function
	GO:0005215	transporter activity	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
biological process
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0009279	cell outer membrane	A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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SS Bonds (5, 5)

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