3L1H - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF ESTE5, WAS SOAKED BY FECL3

Authors :   K. H. Nam, K. Y. Hwang

Date :   11 Dec 09 (Deposition) - 19 Jan 10 (Release) - 19 Jan 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.40

Chains :   Asym./Biol. Unit : A

Keywords :   Hsl, Este5, Esterase, Lipase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. H. Nam, K. Y. Hwang
Structural Insights Into The Noninvasive Inhibition Of Hsl-Homolog Este5 By Organic Solvents And Metal Ions
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - ESTERASE/LIPASE
	Chains	:	A
	EC Number	:	3.1.1.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Scientific	:	UNCULTURED BACTERIUM
	Organism Taxid	:	77133
	Other Details	:	SOIL METAGENOME LIBRARY
	Synonym	:	ESTE5

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 3L1H)

(no "Site" information available for 3L1H)

(no "SS Bond" information available for 3L1H)

Asymmetric/Biological Unit

No.	Residues
1	Ala A:109	-	Pro A:110
2	Phe A:114	-	Pro A:115

(no "SAP(SNP)/Variant" information available for 3L1H)

(no "PROSITE Motif" information available for 3L1H)

(no "Exon" information available for 3L1H)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:294
 aligned with Q0GMU2_9BACT | Q0GMU2 from UniProtKB/TrEMBL  Length:297

    Alignment length:297
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       
         Q0GMU2_9BACT     1 MAGPEIVKLKKILREKAVPPGTEVPLDVMRKGMEKVAFKAADDIQVEQVTVAGCAAEWVRAPGCQAGKAILYLHGGGYVMGSINTHRSMVGEISRASQAAALLLDYRLAPEHPFPAAVEDGVAAYRWLLDQGFKPQHLSISGDSAGGGLVLAVLVSARDQGLPMPASAIPISPWADMTCTNDSFKTRAEADPMVAPGGINKMAARYLNGADAKHPYASPNFANLKGLPPLLIHVGRDEVLLDDSIKLDAKAKADGVKSTLEIWDDMIHVWHAFHPMLPEGKQAIVRVGEFMREQWAA 297
               SCOP domains d3l1ha_ A: automated matches                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------Abhydrolase_3-3l1hA01 A:70-272                                                                                                                                                                             ------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhh.......hhhhhhhhhhhhh.......eeeeeee..eeeeeee........eeeee........hhhhhhhhhhhhhhhhh.eeeee..........hhhhhhhhhhhhhhhhh..hhh.eeeeeehhhhhhhhhhhhhhhhh......eeeee..........hhhhhhhhhh..---.hhhhhhhhhhh.........hhhhh.......eeeeee....hhhhhhhhhhhhhhh...eeeeee.....hhhhhh..hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3l1h A   1 MAGPEIVKLKKILREKAVPPGTEVPLDVMRKGMEKVAFKAADDIQVEQVTVAGCAAEWVRAPGCQAGKAILYLHGGGYVMGSINTHRSMVGEISRASQAAALLLDYRLAPEHPFPAAVEDGVAAYRWLLDQGFKPQHLSISGDSAGGGLVLAVLVSARDQGLPMPASAIPISPWADMTCTNDSFKTRAEADPM---GGINKMAARYLNGADAKHPYASPNFANLKGLPPLLIHVGRDEVLLDDSIKLDAKAKADGVKSTLEIWDDMIHVWHAFHPMLPEGKQAIVRVGEFMREQWAA 297
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190  |   |200       210       220       230       240       250       260       270       280       290       
                                                                                                                                                                                                                          193 197

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: alpha/beta-Hydrolases (971)

Superfamily: alpha/beta-Hydrolases (971)

Family: automated matches (184)

Protein domain: automated matches (184)

Uncultured bacterium [TaxId: 77133] (15)

d3l1ha_

(no "CATH Domain" information available for 3L1H)

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: AB_hydrolase (347)

Family: Abhydrolase_3 (15)

uncultured bacterium (3)

Abhydrolase_3-3l1hA01

A:70-272

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (Q0GMU2_9BACT | Q0GMU2)

molecular function
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
biological process
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

Asymmetric/Biological Unit
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	Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 3l1h)

	Sites
(no "Sites" information available for 3l1h)

	Cis Peptide Bonds
		Ala A:109 - Pro A:110	[ RasMol ]
		Phe A:114 - Pro A:115	[ RasMol ]

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	3l1h
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	3.1.1.-
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3fak	CRYSTAL STRUCTURE OF ESTE5 (NATIVE)
3h17	CRYSTAL STRUCTURE OF ESTE5-PMSF (I)
3h18	CRYSTAL STRUCTURE OF ESTE5-PMSF (II)
3h19	CRYSTAL STRUCTURE OF ESTE5, WAS SOAKED BY METHYL ALCOHOL
3h1a	CRYSTAL STRUCTURE OF ESTE5, WAS SOAKED BY ETHYL ALCOHOL
3h1b	CRYSTAL STRUCTURE OF ESTE5, WAS SOAKED BY ISOPROPYL ALCOHOL
3l1i	CRYSTAL STRUCTURE OF ESTE5, WAS SOAKED BY CUSO4
3l1j	CRYSTAL STRUCTURE OF ESTE5, WAS SOAKED BY ZNSO4

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (1, 1)

Gene Ontology (2, 2)

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