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(-) Description

Title :  CRYSTAL STRUCTURE OF CALCIUM BINDING DOMAIN OF CPCDPK3, CGD5_820
 
Authors :  W. Qiu, A. Hutchinson, A. Wernimont, J. R. Walker, H. Sullivan, Y. -H. Li F. Mackenzie, I. Kozieradzki, D. Cossar, M. Schapira, G. Senisterra, C. H. Arrowsmith, C. Bountra, J. Weigelt, A. M. Edwards, A. Bochkarev, M. Amani, Structural Genomics Consortium (Sgc)
Date :  11 Dec 09  (Deposition) - 22 Dec 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.14
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (2x)
Biol. Unit 2:  B  (2x)
Biol. Unit 3:  A  (1x)
Biol. Unit 4:  B  (1x)
Keywords :  Transferase, Calcium Dependent Protein Kinase, Ef Hand, Calmodulin, Atp-Binding, Kinase, Nucleotide-Binding, Serine/Threonine-Protein Kinase, Structural Genomics, Structural Genomics Consortium, Sgc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Qiu, A. Hutchinson, A. Wernimont, J. R. Walker, H. Sullivan, Y. -H. Lin, F. Mackenzie, I. Kozieradzki, D. Cossar, M. Schapira, G. Senisterra, M. Vedadi, C. H. Arrowsmith, C. Bountra, J. Weigelt, A. M. Edwards, A. Bochkarev, R. Hui, M. Amani
Crystal Structure Of Calcium Binding Domain Of Cpcdpk3, Cgd5_820
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CALCIUM/CALMODULIN DEPENDENT PROTEIN KINASE WITH A KINASE DOMAIN AND 4 CALMODULIN LIKE EF HANDS
    Chains: A, B
    EC Number: 2.7.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15-MHL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CGD5_820
    Organism Scientific: CRYPTOSPORIDIUM PARVUM
    Organism Taxid: 353152
    Strain: IOWA II

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): A 
Biological Unit 2 (2x):  B
Biological Unit 3 (1x): A 
Biological Unit 4 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 13)

Asymmetric Unit (3, 13)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
2CA8Ligand/IonCALCIUM ION
3GOL4Ligand/IonGLYCEROL
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
11PE-1Ligand/IonPENTAETHYLENE GLYCOL
2CA-1Ligand/IonCALCIUM ION
3GOL2Ligand/IonGLYCEROL
Biological Unit 2 (2, 8)
No.NameCountTypeFull Name
11PE2Ligand/IonPENTAETHYLENE GLYCOL
2CA-1Ligand/IonCALCIUM ION
3GOL6Ligand/IonGLYCEROL
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
11PE-1Ligand/IonPENTAETHYLENE GLYCOL
2CA-1Ligand/IonCALCIUM ION
3GOL1Ligand/IonGLYCEROL
Biological Unit 4 (2, 4)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
2CA-1Ligand/IonCALCIUM ION
3GOL3Ligand/IonGLYCEROL

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:423 , ASP A:425 , ASN A:427 , TYR A:429 , GLU A:434BINDING SITE FOR RESIDUE CA A 1
02AC2SOFTWAREHOH A:146 , ASP A:459 , ASP A:461 , ASN A:463 , LYS A:465 , GLU A:470BINDING SITE FOR RESIDUE CA A 2
03AC3SOFTWAREHOH A:98 , ASP A:493 , ASN A:495 , ASP A:497 , ASP A:499 , GLU A:504BINDING SITE FOR RESIDUE CA A 3
04AC4SOFTWAREHOH A:87 , ASP A:379 , ASN A:381 , ASP A:383 , GLN A:385 , GLU A:390BINDING SITE FOR RESIDUE CA A 8
05AC5SOFTWAREHOH A:27 , ARG A:376 , GLY A:384BINDING SITE FOR RESIDUE GOL A 521
06AC6SOFTWAREASP B:423 , ASP B:425 , ASN B:427 , TYR B:429 , GLU B:434BINDING SITE FOR RESIDUE CA B 4
07AC7SOFTWAREHOH B:59 , ASP B:379 , ASN B:381 , ASP B:383 , GLN B:385 , GLU B:390BINDING SITE FOR RESIDUE CA B 5
08AC8SOFTWAREHOH B:64 , ASP B:459 , ASP B:461 , ASN B:463 , LYS B:465 , GLU B:470BINDING SITE FOR RESIDUE CA B 6
09AC9SOFTWAREHOH B:58 , ASP B:493 , ASN B:495 , ASP B:497 , ASP B:499 , GLU B:504BINDING SITE FOR RESIDUE CA B 7
10BC1SOFTWAREHOH A:117 , THR A:363 , GLN A:365 , SER B:360 , LYS B:361 , THR B:363 , GLN B:365 , TYR B:432 , SER B:433BINDING SITE FOR RESIDUE 1PE B 1
11BC2SOFTWAREHOH B:43 , HOH B:154 , PRO B:332 , GLU B:370 , MET B:440 , ASP B:441BINDING SITE FOR RESIDUE GOL B 2
12BC3SOFTWAREHOH B:88 , VAL B:468 , GLU B:481BINDING SITE FOR RESIDUE GOL B 521
13BC4SOFTWAREHOH B:86 , ASP B:423 , ARG B:426BINDING SITE FOR RESIDUE GOL B 522

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3L19)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3L19)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3L19)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3L19)

(-) Exons   (0, 0)

(no "Exon" information available for 3L19)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:184
 aligned with Q5CS01_CRYPI | Q5CS01 from UniProtKB/TrEMBL  Length:523

    Alignment length:187
                                   339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       
         Q5CS01_CRYPI   330 ELPSLANAIENMRKFQNSQKLAQAALLYMASKLTSQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYIDYSEFVTVAMDRKSLLSKDKLESAFQKFDQDGNGKISVDELASVFGLDHLESKTWKEMISGIDSNNDGDVDFEEFCKMIQKLCSNN 516
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh.....eehhhhhhhhhhhhh-...hhhhhhhhhhhhhhhhhhhh......eehhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eehhhhhhhhh..--.hhhhhhhhh..........eehhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3l19 A 330 ELPSLANAIENMRKFQNSQKLAQAALLYMASKLTSQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLS-EEVAVFDLPQIESEVDAILGAADFDRNGYIDYSEFVTVAMDRKSLLSKDKLESAFQKFDQDGNGKISVDELASVFGL--LESKTWKEMISGIDSNNDGDVDFEEFCKMIQKLCSNN 516
                                   339       349       359       369       379       389       399 |     409       419       429       439       449       459       469       | -|      489       499       509       
                                                                                               399 |                                                                         477  |                                    
                                                                                                 401                                                                            480                                    


Chain B from PDB  Type:PROTEIN  Length:179
 aligned with Q5CS01_CRYPI | Q5CS01 from UniProtKB/TrEMBL  Length:523

    Alignment length:187
                                   339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       
         Q5CS01_CRYPI   330 ELPSLANAIENMRKFQNSQKLAQAALLYMASKLTSQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYIDYSEFVTVAMDRKSLLSKDKLESAFQKFDQDGNGKISVDELASVFGLDHLESKTWKEMISGIDSNNDGDVDFEEFCKMIQKLCSNN 516
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh.....eehhhhhhhhhhhhh--..hhhhhhhhhhhhhhhhhhhh......eehhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eehhhhhhhhh.----...hhhhhh--........eehhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3l19 B 330 ELPSLANAIENMRKFQNSQKLAQAALLYMASKLTSQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLS--EVAVFDLPQIESEVDAILGAADFDRNGYIDYSEFVTVAMDRKSLLSKDKLESAFQKFDQDGNGKISVDELASVFG----ESKTWKEMI--IDSNNDGDVDFEEFCKMIQKLCSNN 516
                                   339       349       359       369       379       389       399  |    409       419       429       439       449       459       469      |  - |     489  |    499       509       
                                                                                               399  |                                                                       476  481     489  |                        
                                                                                                  402                                                                                       492
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3L19)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3L19)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3L19)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q5CS01_CRYPI | Q5CS01)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0004672    protein kinase activity    Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
    GO:0004674    protein serine/threonine kinase activity    Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
biological process
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0006468    protein phosphorylation    The process of introducing a phosphate group on to a protein.

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