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(-) Description

Title :  CRYSTAL STRUCTURE OF NUCLEOSOME ASSEMBLY PROTEIN S (PFNAPS) FROM PLASMODIUM FALCIPARUM
 
Authors :  J. Gill, M. Yogavel, A. Sharma
Date :  27 Feb 17  (Deposition) - 15 Mar 17  (Release) - 15 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Keywords :  Nucleosome Assembly Protein, Histone Recognition, Chaperone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Gill, A. Kumar, M. Yogavel, H. Belrhali, S. K. Jain, M. Rug, M. Brown, A. G. Maier, A. Sharma
Structure, Localization And Histone Binding Properties Of Nuclear-Associated Nucleosome Assembly Protein From Plasmodium Falciparum.
Malar. J. V. 9 90 2010
PubMed-ID: 20377878  |  Reference-DOI: 10.1186/1475-2875-9-90

(-) Compounds

Molecule 1 - NUCLEOSOME ASSEMBLY PROTEIN
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 29-221
    Gene: B7
    Organism Scientific: PLASMODIUM FALCIPARUM
    Organism Taxid: 5833

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB    
Biological Unit 2 (1x):   CD  
Biological Unit 3 (1x):     EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5X7V)

(-) Sites  (0, 0)

(no "Site" information available for 5X7V)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5X7V)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Glu A:134 -Pro A:135
2Glu B:134 -Pro B:135
3Glu C:134 -Pro C:135
4Glu D:134 -Pro D:135
5Glu E:134 -Pro E:135
6Glu F:134 -Pro F:135

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5X7V)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5X7V)

(-) Exons   (0, 0)

(no "Exon" information available for 5X7V)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:177
                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh...hhhhhhhh.eeeeeee........eeeeeee.hhhhhh....eeeeeeee....eeeeee.................hhhhhh.........hhhhhhhhhh...hhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5x7v A  29 FMQDFEDIQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEIIQKIPGFWANTLRKHPALSDIVPEDIDILNHLVKLDLKDNMDNNGSYKITFIFGEKAKEFMEPLTLVKHVTFDNNQEKVVECTRIKWKEGKNPIAAPKWSIFEWFTTDELQDKPDVGELIRREIWHNPLSYYL 217
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168|      190       200       210       
                                                                                                                                                                     168|                                    
                                                                                                                                                                      181                                    


Chain B from PDB  Type:PROTEIN  Length:160
                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhh.hhhhh..hhhhhhhhh.eeeeeee........eeeeeee.hhhh..ee..eeeeeeee....eeee.ee.....hhhhhh...hhhhhhhhhh...hhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5x7v B  29 FMQDFEDIQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEIIQKIPGFWANTLRKHPALSDIVPEDIDILNHLVKLDLKDNMDNNGSYKITFIFGEKAKEFMEPLTLVKHVTFDNNQEKVVIKWKEGKWSIFEWFTTPDVGELIRREIWHNPLSYYL 217
                                    38        48        58        68        78        88        98       108       118       128       138       148   ||  162||     191|      207       217
                                                                                                                                                     152|   163|     191|                   
                                                                                                                                                      157    183      198                   


Chain C from PDB  Type:PROTEIN  Length:179
                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh...hhhhhhhh.eeeeeeee.......eeeeeee.hhhhhh....eeeeee.........eee...................hhhhhh.........hhhhhhhhh...hhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5x7v C  29 FMQDFEDIQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEIIQKIPGFWANTLRKHPALSDIVPEDIDILNHLVKLDLKDNMDNNGSYKITFIFGEKAKEFMEPLTLVKHVTFDNNQEKVVECTRIKWKEGKNPIAAVIPKWSIFEWFTTDELQDKPDVGELIRREIWHNPLSYYL 217
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168||     188       198       208         
                                                                                                                                                                      169|                                     
                                                                                                                                                                       180                                     


Chain D from PDB  Type:PROTEIN  Length:172
                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh..hhhhhhhhh.eeeeeeeeeee...eeeeeeee.hhhhh.ee..eeeeee...eee...ee....hhhhhh...hhhhhh.........hhhhhhhhhh..hhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5x7v D  29 FMQDFEDIQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEIIQKIPGFWANTLRKHPALSDIVPEDIDILNHLVKLDLKDNMDNNGSYKITFIFGEKAKEFMEPLTLVKHVTFVVECTRIKWKEGKNPIAAVPKWSIFEWFTTDELQDKPDVGELIRREIWHNPLSYYL 217
                                    38        48        58        68        78        88        98       108       118       128       138     ||154       164    || 185       195       205       215  
                                                                                                                                             144|               169|                                    
                                                                                                                                              151                181                                    


Chain E from PDB  Type:PROTEIN  Length:167
                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh..hhhhhhhhh.eeeeeeeeee....eeeeeeee.hhhhh.ee..eeeeee..........ee.............hhhhhh...hhhhhhhhh...hhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5x7v E  29 FMQDFEDIQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEIIQKIPGFWANTLRKHPALSDIVPEDIDILNHLVKLDLKDNMDNNGSYKITFIFGEKAKEFMEPLTLVKHVTEKVVECTRIKWKEGKNPIAAVPKWSIFEWFTTPDVGELIRREIWHNPLSYYL 217
                                    38        48        58        68        78        88        98       108       118       128       138    || 153       163     ||184      |200       210       
                                                                                                                                            143|                 169|       191|                   
                                                                                                                                             149                  181        198                   


Chain F from PDB  Type:PROTEIN  Length:168
                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhh........hhhhhhhhh.eeeeeeeeeeee..eeeeeeee.hhhhh.ee..eeeeee........ee...ee.............hhhhhh.hhhhhhhhh...hhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5x7v F  29 FMQDFEDIQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEIIQKIPGFWANTLRKHPALSDIVPEDIDILNHLVKLDLKDNMDNNGSYKITFIFGEKAKEFMEPLTLVKHVTFDNEKVVECTRIKWKEGKNPIAAVPKWSIFEWFPDVGELIRREIWHNPLSYYL 217
                                    38        48        58        68        78        88        98       108       118       128       138       150       160       181       199       209        
                                                                                                                                               146|                 169|     189|                   
                                                                                                                                                149                  181      198
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0 ; only for superseded entry 3KYP: 1,6)

(no "SCOP Domain" information available for 5X7V, only for superseded entry 3KYP replaced by 5X7V)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5X7V)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5X7V)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Glu A:134 - Pro A:135   [ RasMol ]  
    Glu B:134 - Pro B:135   [ RasMol ]  
    Glu C:134 - Pro C:135   [ RasMol ]  
    Glu D:134 - Pro D:135   [ RasMol ]  
    Glu E:134 - Pro E:135   [ RasMol ]  
    Glu F:134 - Pro F:135   [ RasMol ]  
 
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