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(-) Description

Title :  CRYSTAL STRUCTURE OF PUTATIVE PHOSPHATASE (NP_812416.1) FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.77 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  04 Dec 09  (Deposition) - 22 Dec 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.77
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Putative Phosphatase, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Phosphatase (Np_812416. 1) Fro Bacteroides Thetaiotaomicron Vpi-5482 At 1. 77 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE PHOSPHATASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: SEQUENCE DATABASE RESIDUES 24-518
    Gene: BT_3504
    Organism Scientific: BACTEROIDES THETAIOTAOMICRON
    Organism Taxid: 818

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 37)

Asymmetric Unit (5, 37)
No.NameCountTypeFull Name
1ACT5Ligand/IonACETATE ION
2CL2Ligand/IonCHLORIDE ION
3EDO14Ligand/Ion1,2-ETHANEDIOL
4MSE7Mod. Amino AcidSELENOMETHIONINE
5ZN9Ligand/IonZINC ION
Biological Unit 1 (3, 52)
No.NameCountTypeFull Name
1ACT10Ligand/IonACETATE ION
2CL-1Ligand/IonCHLORIDE ION
3EDO28Ligand/Ion1,2-ETHANEDIOL
4MSE14Mod. Amino AcidSELENOMETHIONINE
5ZN-1Ligand/IonZINC ION

(-) Sites  (30, 30)

Asymmetric Unit (30, 30)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:209 , ARG A:211 , ASP A:234 , GLN A:270 , ASN A:272 , TYR A:288BINDING SITE FOR RESIDUE EDO A 1
02AC2SOFTWAREALA A:52 , SER A:95 , TYR A:123 , VAL A:128 , ASP A:458 , GLU A:496 , HOH A:689BINDING SITE FOR RESIDUE EDO A 2
03AC3SOFTWARETYR A:53 , ILE A:80 , VAL A:93 , PRO A:94 , SER A:95 , HOH A:531 , HOH A:616BINDING SITE FOR RESIDUE EDO A 3
04AC4SOFTWARELYS A:71 , LYS A:73 , GLU A:103 , THR A:105BINDING SITE FOR RESIDUE EDO A 4
05AC5SOFTWARETYR A:383 , ARG A:384 , ASP A:385BINDING SITE FOR RESIDUE EDO A 5
06AC6SOFTWARELYS A:306 , GLU A:478BINDING SITE FOR RESIDUE EDO A 6
07AC7SOFTWAREPRO A:170 , ASN A:172 , LYS A:173 , ASP A:224 , GLU A:225 , HOH A:675BINDING SITE FOR RESIDUE EDO A 7
08AC8SOFTWAREEDO A:14 , THR A:46 , LYS A:55 , TYR A:90 , ARG A:358 , ASP A:360 , TYR A:372BINDING SITE FOR RESIDUE EDO A 8
09AC9SOFTWAREGLY A:134 , PHE A:149 , ASP A:150 , LYS A:156BINDING SITE FOR RESIDUE EDO A 9
10BC1SOFTWARETYR A:416 , TYR A:473 , HOH A:787 , HOH A:878BINDING SITE FOR RESIDUE EDO A 10
11BC2SOFTWAREASN A:172 , HIS A:175 , ARG A:250 , GLY A:254 , HOH A:822BINDING SITE FOR RESIDUE EDO A 11
12BC3SOFTWARELEU A:200 , ASN A:201 , ILE A:202 , ASP A:257 , ASP A:258 , SER A:260 , HOH A:599BINDING SITE FOR RESIDUE EDO A 12
13BC4SOFTWAREGLU A:227 , LYS A:249 , ARG A:250 , ASN A:251 , ZN A:524 , HOH A:528 , HOH A:772 , HOH A:885 , HOH A:895BINDING SITE FOR RESIDUE EDO A 13
14BC5SOFTWAREEDO A:8 , GLN A:54 , TYR A:372 , PHE A:374 , PRO A:430 , HOH A:847BINDING SITE FOR RESIDUE EDO A 14
15BC6SOFTWAREACT A:16 , ASP A:362 , ILE A:364 , LYS A:365 , ZN A:523BINDING SITE FOR RESIDUE ACT A 15
16BC7SOFTWAREACT A:15 , SER A:43 , ASP A:362 , ILE A:364 , ZN A:523 , ZN A:526BINDING SITE FOR RESIDUE ACT A 16
17BC8SOFTWAREACT A:18 , TRP A:144 , HIS A:183 , ZN A:520 , HOH A:580 , HOH A:764BINDING SITE FOR RESIDUE ACT A 17
18BC9SOFTWAREACT A:17 , GLY A:182 , HIS A:183 , ASN A:208 , ZN A:520 , HOH A:748 , HOH A:764 , HOH A:856BINDING SITE FOR RESIDUE ACT A 18
19CC1SOFTWAREGLU A:124 , HOH A:718BINDING SITE FOR RESIDUE ACT A 19
20CC2SOFTWARELYS A:69 , GLU A:108BINDING SITE FOR RESIDUE CL A 20
21CC3SOFTWAREASN A:163 , ILE A:351 , ASN A:395 , CYS A:397 , ARG A:420 , HOH A:931BINDING SITE FOR RESIDUE CL A 21
22CC4SOFTWAREASP A:66 , ARG A:136 , ASP A:140 , HIS A:488 , HOH A:876BINDING SITE FOR RESIDUE ZN A 22
23CC5SOFTWAREHIS A:175 , ASP A:190 , HOH A:674 , HOH A:803 , HOH A:804 , HOH A:877BINDING SITE FOR RESIDUE ZN A 519
24CC6SOFTWAREACT A:17 , ACT A:18 , HIS A:183 , HOH A:764BINDING SITE FOR RESIDUE ZN A 520
25CC7SOFTWAREASP A:386 , GLU A:390 , HOH A:677BINDING SITE FOR RESIDUE ZN A 521
26CC8SOFTWAREGLU A:390BINDING SITE FOR RESIDUE ZN A 522
27CC9SOFTWAREACT A:15 , ACT A:16 , ASP A:362 , HOH A:768BINDING SITE FOR RESIDUE ZN A 523
28DC1SOFTWAREEDO A:13 , GLU A:227BINDING SITE FOR RESIDUE ZN A 524
29DC2SOFTWAREGLU A:241BINDING SITE FOR RESIDUE ZN A 525
30DC3SOFTWAREACT A:16 , ASP A:44BINDING SITE FOR RESIDUE ZN A 526

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3KYA)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Thr A:46 -Pro A:47

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3KYA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3KYA)

(-) Exons   (0, 0)

(no "Exon" information available for 3KYA)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:471
 aligned with Q8A204_BACTN | Q8A204 from UniProtKB/TrEMBL  Length:518

    Alignment length:471
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498 
         Q8A204_BACTN    29 VETGAFDPSKPVAISDFTPKEGGAYQKLLIYGENFGTDVSKVKVKIGGKDAIVINVKSTYVYCFVPSGAFSGEIEITVGEGENAVTTTASTTFSYEKKMVVGTLCGYRNNRDDQGWRDGPFDGPEGVKCCGFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEE 499
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeeee..ee....eeeeeee....hhh.eeeee..eee.eeee...eeeee.........eeeee.hhhhheeee.....ee...eeeeeeee............ee..............eeeeeee..eeeeeeeeee....eeeee....eeeeee.........eeeeee............eeeeee....hhhheeeeeeee............eeeeeee.....eee......eeeee....eeeeehhhhhhhhhhh......hhhhh...eeeeee.......eeeee.....eeeeee....eeeeeeee....ee...eeeee..........hhhhh....eeeeeeee.........eeeeeee....eeeee.....eeeeee...hhhhhhh.......ee.............eee....eeeeee....eeeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kya A  29 VETGAFDPSKPVAISDFTPKEGGAYQKLLIYGENFGTDVSKVKVKIGGKDAIVINVKSTYVYCFVPSGAFSGEIEITVGEGENAVTTTASTTFSYEKKmVVGTLCGYRNNRDDQGWRDGPFDGPEGVKCCGFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRmLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYmIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFmRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARmNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEmFYVHDQVGHTIRTISmEQEE 499
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188      |198       208       218       228|      238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388    |  398       408       418       428       438       448       458       468       478|      488      |498 
                                                                                                                            127-MSE                                                             195-MSE                           229-MSE                                                                                                                         357-MSE                             393-MSE                                                                               479-MSE         495-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3KYA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3KYA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3KYA)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3KYA)

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