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(-) Description

Title :  CRYSTAL STRUCTURE OF SHORT-CHAIN DEHYDROGENASE FROM OENOCOCCUS OENI PSU-1
 
Authors :  Y. Patskovsky, R. Toro, M. Gilmore, S. Miller, J. M. Sauder, S. C. Almo, S. K. Burley, New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date :  23 Nov 09  (Deposition) - 01 Dec 09  (Release) - 01 Dec 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Psi-2, Dehydrogenase, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Patskovsky, R. Toro, M. Gilmore, S. Miller, J. M. Sauder, S. K. Burley, S. C. Almo
Crystal Structure Of Short-Chain Dehydrogenase From Oenococcus Oeni Psu-1
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 3-OXOACYL-ACYL CARRIER PROTEIN REDUCTASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: OEOE_0078
    Organism Scientific: OENOCOCCUS OENI PSU-1
    Organism Taxid: 203123
    Strain: BAA-331 / PSU-1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3KSU)

(-) Sites  (0, 0)

(no "Site" information available for 3KSU)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3KSU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3KSU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3KSU)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 3KSU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:234
 aligned with Q04HJ2_OENOB | Q04HJ2 from UniProtKB/TrEMBL  Length:252

    Alignment length:251
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251 
         Q04HJ2_OENOB     2 TKYHDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAAYTGFYSTYAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDTSFFYGQETKESTAFHKSQAMGNQLTKIEDIAPIIKFLTTDGWWINGQTIFANGGYTTR 252
               SCOP domains d3ksua_ A: automated matches                                                                                                                                                                                                                                SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeee...hhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhhh.eeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeee..hhhhhhhh....-----hhhhhhhhhhhhhh.....eeeeeee....hhhhhh..------------......hhhhhhhhhhhhhh........eeee....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ksu A   2 TKYHDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAAYTGFYST-----APVEHYTRAASKELMKQQISVNAIAPGPMDTSFFYGQE------------MGNQLTKIEDIAPIIKFLTTDGWWINGQTIFANGGYTTR 252
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151      |  -  |    171       181       191       201         -  |    221       231       241       251 
                                                                                                                                                                                      158   164                                  201          214                                      


Chain B from PDB  Type:PROTEIN  Length:223
 aligned with Q04HJ2_OENOB | Q04HJ2 from UniProtKB/TrEMBL  Length:252

    Alignment length:247
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       
         Q04HJ2_OENOB     3 KYHDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAAYTGFYSTYAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDTSFFYGQETKESTAFHKSQAMGNQLTKIEDIAPIIKFLTTDGWWINGQTIFANGGY 249
               SCOP domains d3ksub_ B: automated matches                                                                                                                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -------------adh_short_C2-3ksuB01 B:16-249                                                                                                                                                                                                              Pfam domains (1)
           Pfam domains (2) -------------adh_short_C2-3ksuB02 B:16-249                                                                                                                                                                                                              Pfam domains (2)
         Sec.struct. author ........eeeee...hhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhhh.eeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeee..hhhhhhhh....-----hhhhhhhhhhhhhh.....eeeeeee.......-------------------....hhhhhhhhhhhhh.........eeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ksu B   3 KYHDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAAYTGFYST-----APVEHYTRAASKELMKQQISVNAIAPGPMDTSF-------------------NQLTKIEDIAPIIKFLTTDGWWINGQTIFANGGY 249
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152     |   - |     172       182       192   |     -         -   |   222       232       242       
                                                                                                                                                                                     158   164                             196                 216
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3KSU)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: NADP_Rossmann (1239)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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