3KRV - JenaLib

Title :   THE STRUCTURE OF POTENTIAL METAL-DEPENDENT HYDROLASE WITH CYCLASE ACTIVITY

Authors :   N. Rakonjac, P. Rezacova, D. Borek, F. Collart, A. Joachimiak, Z. Otwin Midwest Center For Structural Genomics (Mcsg)

Date :   19 Nov 09 (Deposition) - 05 Jan 10 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.55

Chains :   Asym./Biol. Unit : A,B

Keywords :   Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. Rezacova, N. Rakonjac, J. Maderova, D. Borek, D. Tomchick, A. Joachimiak, F. Collart, Z. Otwinowski
The Structure Of Potential Metal-Dependent Hydrolase With Cyclase Activity
To Be Published
PubMed: search

Compounds

Molecule 1 - HYDROLASE
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Organism Common	:	GEOBACILLUS STEAROTHERMOPHILUS
	Organism Scientific	:	GEOBACILLUS STEAROTHERMOPHILUS
	Organism Taxid	:	1422
	Synonym	:	PREDICTED METAL-DEPENDENT HYDROLASE

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 20)

Asymmetric/Biological Unit (5, 20)

No.	Name	Count	Type	Full Name
1	CL	8	Ligand/Ion	CHLORIDE ION
2	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
3	GOL	2	Ligand/Ion	GLYCEROL
4	SO4	8	Ligand/Ion	SULFATE ION
5	ZN	1	Ligand/Ion	ZINC ION

Sites (17, 17)

Asymmetric Unit (17, 17)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ARG A:197 , PHE B:63 , HOH B:261	BINDING SITE FOR RESIDUE CL A 206
02	AC2	SOFTWARE	LEU A:68 , HOH A:283 , HOH B:259	BINDING SITE FOR RESIDUE CL A 208
03	AC3	SOFTWARE	LYS A:108 , ASN A:109 , GLU A:112 , GLU A:118 , PHE A:119 , ILE A:120	BINDING SITE FOR RESIDUE SO4 A 209
04	AC4	SOFTWARE	ASN A:84 , HOH A:279	BINDING SITE FOR RESIDUE SO4 A 210
05	AC5	SOFTWARE	LYS A:20 , GLU A:22 , ARG A:128	BINDING SITE FOR RESIDUE SO4 A 211
06	AC6	SOFTWARE	GLU A:112 , ASP A:113 , ALA A:114 , HIS A:116	BINDING SITE FOR RESIDUE SO4 A 212
07	AC7	SOFTWARE	LYS A:18 , ALA A:148	BINDING SITE FOR RESIDUE SO4 A 213
08	AC8	SOFTWARE	LYS A:76 , LEU A:77 , GLU A:176 , GLY A:177	BINDING SITE FOR RESIDUE GOL A 214
09	AC9	SOFTWARE	ALA A:114 , HOH A:236 , HOH A:272 , HOH A:273	BINDING SITE FOR RESIDUE EDO A 215
10	BC1	SOFTWARE	HIS B:45 , HIS B:49 , ASP B:51 , GLU B:167 , HOH B:253	BINDING SITE FOR RESIDUE ZN B 206
11	BC2	SOFTWARE	LEU B:68 , ASN B:69	BINDING SITE FOR RESIDUE CL B 208
12	BC3	SOFTWARE	ASN B:84	BINDING SITE FOR RESIDUE CL B 210
13	BC4	SOFTWARE	HOH A:280 , ILE B:10 , THR B:48 , ALA B:196 , HOH B:263	BINDING SITE FOR RESIDUE CL B 211
14	BC5	SOFTWARE	LYS B:18 , ARG B:147 , ALA B:148	BINDING SITE FOR RESIDUE SO4 B 212
15	BC6	SOFTWARE	GLU B:112 , ASP B:113 , ALA B:114 , HIS B:116	BINDING SITE FOR RESIDUE SO4 B 213
16	BC7	SOFTWARE	ARG B:178	BINDING SITE FOR RESIDUE SO4 B 214
17	BC8	SOFTWARE	HIS B:116 , PHE B:117 , GLU B:118	BINDING SITE FOR RESIDUE GOL B 215

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:201
 aligned with P84132_GEOSE | P84132 from UniProtKB/TrEMBL  Length:207

    Alignment length:204
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201    
         P84132_GEOSE     2 AMKVYDVTAPIYEGMPVYKNKPEKQPKRTTITNGYVTESRIDMDVHTGTHIDAPLHMVEGGATFETIPLNDLVGPCKLFDLTHVNDRITKDDIAHLDIQEGDFVLFKTKNSFEDAFHFEFIFVAEDAARYLADKQIRGVGIDALGIERAQEGHPTHKTLFSAGVIIIEGLRLKDVPEGRYFMVAAPLKLVGTDAAPARVLLFDR 205
               SCOP domains d3krva_ A: Unnamed protein                                                                                                                                                                                   SCOP domains
               CATH domains 3krvA00 A:0-203 Putative cyclase                                                                                                                                                                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eee..........hhhhhhhhh.eeeeeee..eeeeeeeee.....eee.hhhhh.---..........eeeeeeee......eehhhhhh........eeeeehhhhhh........eehhhhhhhhhhhh..eeee...........hhhhhhhhhh..eeee.........eeeeeeeee.......eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3krv A   0 AMKVYDVTAPIYEGMPVYKNKPEKQPKRTTITNGYVTESRIDMDVHTGTHIDAPLHMVE---TFETIPLNDLVGPCKLFDLTHVNDRITKDDIAHLDIQEGDFVLFKTKNSFEDAFHFEFIFVAEDAARYLADKQIRGVGIDALGIERAQEGHPTHKTLFSAGVIIIEGLRLKDVPEGRYFMVAAPLKLVGTDAAPARVLLFDR 203
                                     9        19        29        39        49        |-  |     69        79        89        99       109       119       129       139       149       159       169       179       189       199    
                                                                                     58  62

Chain B from PDB  Type:PROTEIN  Length:201
 aligned with P84132_GEOSE | P84132 from UniProtKB/TrEMBL  Length:207

    Alignment length:206
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201      
         P84132_GEOSE     2 AMKVYDVTAPIYEGMPVYKNKPEKQPKRTTITNGYVTESRIDMDVHTGTHIDAPLHMVEGGATFETIPLNDLVGPCKLFDLTHVNDRITKDDIAHLDIQEGDFVLFKTKNSFEDAFHFEFIFVAEDAARYLADKQIRGVGIDALGIERAQEGHPTHKTLFSAGVIIIEGLRLKDVPEGRYFMVAAPLKLVGTDAAPARVLLFDREP 207
               SCOP domains d3krvb_ B: Unnamed protein                                                                                                                                                                                     SCOP domains
               CATH domains 3krvB00 B:0-205 Putative cyclase                                                                                                                                                                               CATH domains
           Pfam domains (1) ---Cyclase-3krvB01 B:3-149                                                                                                                            -------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ---Cyclase-3krvB02 B:3-149                                                                                                                            -------------------------------------------------------- Pfam domains (2)
         Sec.struct. author ...eee..........hhhhhhhhh.eeee..-----.eeeeee.....eee.hhhh.....hhhhhhhhhheeeeeeee......eehhhhhh........eeeeehhhhhh........eehhhhhhhhhhhh..eeee...........hhhhhhhhhh..eeee.........eeeeeeeee.......eeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3krv B   0 AMKVYDVTAPIYEGMPVYKNKPEKQPKRTTIT-----ESRIDMDVHTGTHIDAPLHMVEGGATFETIPLNDLVGPCKLFDLTHVNDRITKDDIAHLDIQEGDFVLFKTKNSFEDAFHFEFIFVAEDAARYLADKQIRGVGIDALGIERAQEGHPTHKTLFSAGVIIIEGLRLKDVPEGRYFMVAAPLKLVGTDAAPARVLLFDREP 205
                                     9        19        29 |     |39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199      
                                                          31    37

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (1, 2)

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Gene Ontology (3, 3)

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