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(-) Description

Title :  CRYSTAL STRUCTURE OF PROTEIN WITH A CYCLOPHILIN-LIKE FOLD (YP_831253.1) FROM ARTHROBACTER SP. FB24 AT 1.90 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  13 Nov 09  (Deposition) - 24 Nov 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Protein With A Cyclophilin-Like Fold, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Protein With A Cyclophilin-Like Fold (Yp_831253. 1) From Arthrobacter Sp. Fb24 At 1. 90 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: ARTH_1761
    Organism Scientific: ARTHROBACTER SP.
    Organism Taxid: 290399
    Strain: FB24

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 18)

Asymmetric/Biological Unit (1, 18)
No.NameCountTypeFull Name
1MSE18Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3KOP)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3KOP)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Leu A:36 -Pro A:37
2Leu B:36 -Pro B:37
3Leu C:36 -Pro C:37
4Leu D:36 -Pro D:37
5Leu E:36 -Pro E:37
6Leu F:36 -Pro F:37

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3KOP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3KOP)

(-) Exons   (0, 0)

(no "Exon" information available for 3KOP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:158
 aligned with A0JVT3_ARTS2 | A0JVT3 from UniProtKB/TrEMBL  Length:169

    Alignment length:166
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160      
         A0JVT3_ARTS2     1 MARYINITLEKRGVTCKALLLDDVAPRTSKAVWDALPQSSQVFHGKYARNEIYNLVPAFAPKEPGAENTTVTPIPGDVCYFTFTSNDLKTPSHGYEADSGTDEVQTIVDLAVFYGRNNLLLNGDTGWVPGNVFATIVEGLDEMAAACQDIWMGGARDETLTFSRAE 166
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee....eeeeeee....hhhhhhhhhhhh.eeee.ee......eeeeeee...........ee......eeeeeeeehhhhhhhhhh.--------..eeeeeeee.......ee...ee..eeeeeeeeehhhhhhhhhhhhhhhh....eeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kop A   1 mARYINITLEKRGVTCKALLLDDVAPRTSKAVWDALPQSSQVFHGKYARNEIYNLVPAFAPKEPGAENTTVTPIPGDVCYFTFTSNDLKTPSHGY--------VQTIVDLAVFYGRNNLLLNGDTGWVPGNVFATIVEGLDEmAAACQDIWmGGARDETLTFSRAE 166
                            |       10        20        30        40        50        60        70        80        90    |    -   |   110       120       130       140  |    150 |     160      
                            |                                                                                            95      104                                    143-MSE  152-MSE          
                            1-MSE                                                                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:156
 aligned with A0JVT3_ARTS2 | A0JVT3 from UniProtKB/TrEMBL  Length:169

    Alignment length:166
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160      
         A0JVT3_ARTS2     1 MARYINITLEKRGVTCKALLLDDVAPRTSKAVWDALPQSSQVFHGKYARNEIYNLVPAFAPKEPGAENTTVTPIPGDVCYFTFTSNDLKTPSHGYEADSGTDEVQTIVDLAVFYGRNNLLLNGDTGWVPGNVFATIVEGLDEMAAACQDIWMGGARDETLTFSRAE 166
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee....eeeeeee....hhhhhhhhhhhh.eeee.ee......eeeeeee...........ee......eeeeeeeehhhhh....----------..eeeeeeee.......ee...ee..eeeeeeeeehhhhhhhhhhhhhhhh....eeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kop B   1 mARYINITLEKRGVTCKALLLDDVAPRTSKAVWDALPQSSQVFHGKYARNEIYNLVPAFAPKEPGAENTTVTPIPGDVCYFTFTSNDLKTPSH----------VQTIVDLAVFYGRNNLLLNGDTGWVPGNVFATIVEGLDEmAAACQDIWmGGARDETLTFSRAE 166
                            |       10        20        30        40        50        60        70        80        90  |      -   |   110       120       130       140  |    150 |     160      
                            1-MSE                                                                                      93        104                                    143-MSE  152-MSE          


Chain C from PDB  Type:PROTEIN  Length:165
 aligned with A0JVT3_ARTS2 | A0JVT3 from UniProtKB/TrEMBL  Length:169

    Alignment length:173
                                   1                                                                                                                                                                     
                                   | 3        13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163   
         A0JVT3_ARTS2     - -------MARYINITLEKRGVTCKALLLDDVAPRTSKAVWDALPQSSQVFHGKYARNEIYNLVPAFAPKEPGAENTTVTPIPGDVCYFTFTSNDLKTPSHGYEADSGTDEVQTIVDLAVFYGRNNLLLNGDTGWVPGNVFATIVEGLDEMAAACQDIWMGGARDETLTFSRAE 166
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeee....eeeeeee....hhhhhhhhhhhh.eeee.ee......eeeeeee...........ee......eeeeeeeehhhhh.......--------.eeeeeeee.......ee...ee..eeeeeeeeehhhhhhhhhhhhhhhh....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kop C  -6 ENLYFQGmARYINITLEKRGVTCKALLLDDVAPRTSKAVWDALPQSSQVFHGKYARNEIYNLVPAFAPKEPGAENTTVTPIPGDVCYFTFTSNDLKTPSHGYE--------QTIVDLAVFYGRNNLLLNGDTGWVPGNVFATIVEGLDEmAAACQDIWmGGARDETLTFSRAE 166
                                   | 3        13        23        33        43        53        63        73        83        93  |      - |     113       123       133       143       153       163   
                                   1-MSE                                                                                         96      105                                   143-MSE  152-MSE          


Chain D from PDB  Type:PROTEIN  Length:158
 aligned with A0JVT3_ARTS2 | A0JVT3 from UniProtKB/TrEMBL  Length:169

    Alignment length:166
                             1                                                                                                                                                                    
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159      
         A0JVT3_ARTS2     - -MARYINITLEKRGVTCKALLLDDVAPRTSKAVWDALPQSSQVFHGKYARNEIYNLVPAFAPKEPGAENTTVTPIPGDVCYFTFTSNDLKTPSHGYEADSGTDEVQTIVDLAVFYGRNNLLLNGDTGWVPGNVFATIVEGLDEMAAACQDIWMGGARDETLTFSRA 165
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee....hhhhhhhhhhhh.eeee.ee......eeeeeee...........ee......eeeeeeeehhhhh.......--------.eeeeeeee.......ee...ee..eeeeeeeeehhhhhhhhhhhhhhhh....eeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kop D   0 GmARYINITLEKRGVTCKALLLDDVAPRTSKAVWDALPQSSQVFHGKYARNEIYNLVPAFAPKEPGAENTTVTPIPGDVCYFTFTSNDLKTPSHGYE--------QTIVDLAVFYGRNNLLLNGDTGWVPGNVFATIVEGLDEmAAACQDIWmGGARDETLTFSRA 165
                             |       9        19        29        39        49        59        69        79        89      |  -     | 109       119       129       139   |   149  |    159      
                             1-MSE                                                                                         96      105                                   143-MSE  152-MSE         


Chain E from PDB  Type:PROTEIN  Length:165
 aligned with A0JVT3_ARTS2 | A0JVT3 from UniProtKB/TrEMBL  Length:169

    Alignment length:172
                                  1                                                                                                                                                                     
                                  |  4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164  
         A0JVT3_ARTS2     - ------MARYINITLEKRGVTCKALLLDDVAPRTSKAVWDALPQSSQVFHGKYARNEIYNLVPAFAPKEPGAENTTVTPIPGDVCYFTFTSNDLKTPSHGYEADSGTDEVQTIVDLAVFYGRNNLLLNGDTGWVPGNVFATIVEGLDEMAAACQDIWMGGARDETLTFSRAE 166
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeee....eeeeeee....hhhhhhhhhhhh.eeee.ee......eeeeeee...........ee......eeeeeeeehhhhh.......-------..eeeeeeee.......ee...ee..eeeeeeeeehhhhhhhhhhhhhhhh....eeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kop E  -5 NLYFQGmARYINITLEKRGVTCKALLLDDVAPRTSKAVWDALPQSSQVFHGKYARNEIYNLVPAFAPKEPGAENTTVTPIPGDVCYFTFTSNDLKTPSHGYE-------VQTIVDLAVFYGRNNLLLNGDTGWVPGNVFATIVEGLDEmAAACQDIWmGGARDETLTFSRAE 166
                                  |  4        14        24        34        44        54        64        74        84        94 |     104       114       124       134       144       154       164  
                                  1-MSE                                                                                         96     104                                    143-MSE  152-MSE          


Chain F from PDB  Type:PROTEIN  Length:169
 aligned with A0JVT3_ARTS2 | A0JVT3 from UniProtKB/TrEMBL  Length:169

    Alignment length:183
                                             1                                                                                                                                                                     
                                     -       | 3        13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163   
         A0JVT3_ARTS2     - -----------------MARYINITLEKRGVTCKALLLDDVAPRTSKAVWDALPQSSQVFHGKYARNEIYNLVPAFAPKEPGAENTTVTPIPGDVCYFTFTSNDLKTPSHGYEADSGTDEVQTIVDLAVFYGRNNLLLNGDTGWVPGNVFATIVEGLDEMAAACQDIWMGGARDETLTFSRAE 166
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----------------------DUF3830-3kopF01 F:7-165                                                                                                                                        - Pfam domains (1)
           Pfam domains (2) -----------------------DUF3830-3kopF02 F:7-165                                                                                                                                        - Pfam domains (2)
           Pfam domains (3) -----------------------DUF3830-3kopF03 F:7-165                                                                                                                                        - Pfam domains (3)
           Pfam domains (4) -----------------------DUF3830-3kopF04 F:7-165                                                                                                                                        - Pfam domains (4)
           Pfam domains (5) -----------------------DUF3830-3kopF05 F:7-165                                                                                                                                        - Pfam domains (5)
           Pfam domains (6) -----------------------DUF3830-3kopF06 F:7-165                                                                                                                                        - Pfam domains (6)
         Sec.struct. author hhhhhhhhhhhhhhhhhh..eeeeee....eeeeeee....hhhhhhhhhhhh.eeee.ee......eeeeeee...........ee......eeeeeeeehhhhh--------------..eeeeeeee.......ee...ee..eeeeeeeeehhhhhhhhhhhhhhhh....eeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kop F -16 SDKIHHHHHHENLYFQGmARYINITLEKRGVTCKALLLDDVAPRTSKAVWDALPQSSQVFHGKYARNEIYNLVPAFAPKEPGAENTTVTPIPGDVCYFTFTSNDLK--------------VQTIVDLAVFYGRNNLLLNGDTGWVPGNVFATIVEGLDEmAAACQDIWmGGARDETLTFSRAE 166
                                    -7       | 3        13        23        33        43        53        63        73        83     |   -         -|      113       123       133       143       153       163   
                                             1-MSE                                                                                  89            104                                    143-MSE  152-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3KOP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3KOP)

(-) Pfam Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Clan: Cyclophil-like (65)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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  Cis Peptide Bonds
    Leu A:36 - Pro A:37   [ RasMol ]  
    Leu B:36 - Pro B:37   [ RasMol ]  
    Leu C:36 - Pro C:37   [ RasMol ]  
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