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(-) Description

Title :  CRYSTAL STRUCTURE OF PUTATIVE SUGAR BINDING PROTEIN (NP_459565.1) FROM SALMONELLA TYPHIMURIUM LT2 AT 2.50 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  12 Nov 09  (Deposition) - 01 Dec 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Keywords :  Putative Sugar Binding Protein, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Sugar Binding Protein (Np_459565. 1) From Salmonella Typhimurium Lt2 At 2. 50 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE SUGAR BINDING PROTEIN
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: STM0573
    Organism Scientific: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TYPHIMURIUM
    Organism Taxid: 90371
    Synonym: PUTATIVE INNER MEMBRANE PROTEIN

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB    
Biological Unit 2 (1x):   CD  
Biological Unit 3 (1x):     EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 70)

Asymmetric Unit (3, 70)
No.NameCountTypeFull Name
1ETX2Ligand/Ion2-ETHOXYETHANOL
2IMD2Ligand/IonIMIDAZOLE
3MSE66Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (3, 24)
No.NameCountTypeFull Name
1ETX1Ligand/Ion2-ETHOXYETHANOL
2IMD1Ligand/IonIMIDAZOLE
3MSE22Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (3, 24)
No.NameCountTypeFull Name
1ETX1Ligand/Ion2-ETHOXYETHANOL
2IMD1Ligand/IonIMIDAZOLE
3MSE22Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 22)
No.NameCountTypeFull Name
1ETX-1Ligand/Ion2-ETHOXYETHANOL
2IMD-1Ligand/IonIMIDAZOLE
3MSE22Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:247 , TRP A:277BINDING SITE FOR RESIDUE ETX A 348
2AC2SOFTWAREARG A:208 , ASN A:248 , PHE A:250 , ASN A:251BINDING SITE FOR RESIDUE IMD A 349
3AC3SOFTWAREPRO C:261 , ASN C:301 , ALA C:306BINDING SITE FOR RESIDUE IMD C 348
4AC4SOFTWARETYR D:247 , TRP D:277 , TYR F:247 , TRP F:277BINDING SITE FOR RESIDUE ETX D 348

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3KNZ)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Ala A:115 -Pro A:116
2Ala B:115 -Pro B:116
3Ala C:115 -Pro C:116
4Ala D:115 -Pro D:116
5Ala E:115 -Pro E:116
6Ala F:115 -Pro F:116

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3KNZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3KNZ)

(-) Exons   (0, 0)

(no "Exon" information available for 3KNZ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:322
 aligned with Q8ZR49_SALTY | Q8ZR49 from UniProtKB/TrEMBL  Length:347

    Alignment length:328
                                  1                                                                                                                                                                                                                                                                                                                                 
                                  |  4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314        
         Q8ZR49_SALTY     - ------MNETPLRLLEMLTQTREDLWRAAQALTERGVTRIILTGSGTSYHGALTARTFMQRWCALPVDVCWPFMLDDETLARSGKALVVGISQGGGSLSTLAAMERARNVGHITASMAGVAPATIDRAADYILTVPCGEETAGAKTKGYHCTVLNLMLLALAVAGQQQRLDGEQRRSLLLRMEKTFNHLPALVTASQAWAQTNALALRDSADIRLTGPATLFGTVQEGALKMLETLRCPVSGYEFEEFIHGIYNAFNAQSALIMLDPQPDARQDRLAQILGEWTPSIYRIGPQVENNGLNLNFPFVNDEDFAVFEYIIPLQMLCAILP 322
               SCOP domains d3knza_ A: automated matches                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhhhhh..eeeehhhhhhhhhhhhh..eeeeeee....hhhhhhhhhhhhhh..eeeeee....hhhhhhh.ee.......------.hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhhhhhhh..eeeeehhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhh..eeeee.........ee.........hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3knz A  -5 NLYFQGmNETPLRLLEmLTQTREDLWRAAQALTERGVTRIILTGSGTSYHGALTARTFmQRWCALPVDVCWPFmLDDETLARSGKALVVGISQGGGSLSTLAAmERARNVGHITASmAGVAPATIDRAADYILTVPCGE------TKGYHCTVLNLmLLALAVAGQQQRLDGEQRRSLLLRmEKTFNHLPALVTASQAWAQTNALALRDSADIRLTGPATLFGTVQEGALKmLETLRCPVSGYEFEEFIHGIYNAFNAQSALImLDPQPDARQDRLAQILGEWTPSIYRIGPQVENNGLNLNFPFVNDEDFAVFEYIIPLQmLCAILP 322
                                  |  4      | 14        24        34        44        54        64   |    74        84        94   |   104      |114       124        |-     | 144      |154       164       174 |     184       194       204       214       224 |     234       244       254   |   264       274       284       294       304       314 |      
                                  1-MSE    11-MSE                                    53-MSE         68-MSE                        98-MSE      111-MSE               133    140        151-MSE                  176-MSE                                           226-MSE                         258-MSE                                                   316-MSE  


Chain B from PDB  Type:PROTEIN  Length:321
 aligned with Q8ZR49_SALTY | Q8ZR49 from UniProtKB/TrEMBL  Length:347

    Alignment length:327
                                  1                                                                                                                                                                                                                                                                                                                                
                                  |  4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       
         Q8ZR49_SALTY     - ------MNETPLRLLEMLTQTREDLWRAAQALTERGVTRIILTGSGTSYHGALTARTFMQRWCALPVDVCWPFMLDDETLARSGKALVVGISQGGGSLSTLAAMERARNVGHITASMAGVAPATIDRAADYILTVPCGEETAGAKTKGYHCTVLNLMLLALAVAGQQQRLDGEQRRSLLLRMEKTFNHLPALVTASQAWAQTNALALRDSADIRLTGPATLFGTVQEGALKMLETLRCPVSGYEFEEFIHGIYNAFNAQSALIMLDPQPDARQDRLAQILGEWTPSIYRIGPQVENNGLNLNFPFVNDEDFAVFEYIIPLQMLCAIL 321
               SCOP domains d3knzb_ B: automated matches                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhhhhh..eeeehhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhh.eeeee.....hhhhhhh.ee.......------.hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhhhhhhh..eeeeehhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhh..eeeee.........ee.........hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3knz B  -5 NLYFQGmNETPLRLLEmLTQTREDLWRAAQALTERGVTRIILTGSGTSYHGALTARTFmQRWCALPVDVCWPFmLDDETLARSGKALVVGISQGGGSLSTLAAmERARNVGHITASmAGVAPATIDRAADYILTVPCGE------TKGYHCTVLNLmLLALAVAGQQQRLDGEQRRSLLLRmEKTFNHLPALVTASQAWAQTNALALRDSADIRLTGPATLFGTVQEGALKmLETLRCPVSGYEFEEFIHGIYNAFNAQSALImLDPQPDARQDRLAQILGEWTPSIYRIGPQVENNGLNLNFPFVNDEDFAVFEYIIPLQmLCAIL 321
                                  |  4      | 14        24        34        44        54        64   |    74        84        94   |   104      |114       124        |-     | 144      |154       164       174 |     184       194       204       214       224 |     234       244       254   |   264       274       284       294       304       314 |     
                                  1-MSE    11-MSE                                    53-MSE         68-MSE                        98-MSE      111-MSE               133    140        151-MSE                  176-MSE                                           226-MSE                         258-MSE                                                   316-MSE 


Chain C from PDB  Type:PROTEIN  Length:321
 aligned with Q8ZR49_SALTY | Q8ZR49 from UniProtKB/TrEMBL  Length:347

    Alignment length:328
                                  1                                                                                                                                                                                                                                                                                                                                 
                                  |  4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314        
         Q8ZR49_SALTY     - ------MNETPLRLLEMLTQTREDLWRAAQALTERGVTRIILTGSGTSYHGALTARTFMQRWCALPVDVCWPFMLDDETLARSGKALVVGISQGGGSLSTLAAMERARNVGHITASMAGVAPATIDRAADYILTVPCGEETAGAKTKGYHCTVLNLMLLALAVAGQQQRLDGEQRRSLLLRMEKTFNHLPALVTASQAWAQTNALALRDSADIRLTGPATLFGTVQEGALKMLETLRCPVSGYEFEEFIHGIYNAFNAQSALIMLDPQPDARQDRLAQILGEWTPSIYRIGPQVENNGLNLNFPFVNDEDFAVFEYIIPLQMLCAILP 322
               SCOP domains d3knzc_ C: automated matches                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh....eeee.hhhhhhhhhhhhhhhhhhhh..eeeehhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhh.eeeeee....hhhhhhh.ee......-------.hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhhhhhhh..eeeeehhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhh....eeeee.........ee.........hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3knz C  -5 NLYFQGmNETPLRLLEmLTQTREDLWRAAQALTERGVTRIILTGSGTSYHGALTARTFmQRWCALPVDVCWPFmLDDETLARSGKALVVGISQGGGSLSTLAAmERARNVGHITASmAGVAPATIDRAADYILTVPCG-------TKGYHCTVLNLmLLALAVAGQQQRLDGEQRRSLLLRmEKTFNHLPALVTASQAWAQTNALALRDSADIRLTGPATLFGTVQEGALKmLETLRCPVSGYEFEEFIHGIYNAFNAQSALImLDPQPDARQDRLAQILGEWTPSIYRIGPQVENNGLNLNFPFVNDEDFAVFEYIIPLQmLCAILP 322
                                  |  4      | 14        24        34        44        54        64   |    74        84        94   |   104      |114       124       | -     | 144      |154       164       174 |     184       194       204       214       224 |     234       244       254   |   264       274       284       294       304       314 |      
                                  1-MSE    11-MSE                                    53-MSE         68-MSE                        98-MSE      111-MSE              132     140        151-MSE                  176-MSE                                           226-MSE                         258-MSE                                                   316-MSE  


Chain D from PDB  Type:PROTEIN  Length:322
 aligned with Q8ZR49_SALTY | Q8ZR49 from UniProtKB/TrEMBL  Length:347

    Alignment length:328
                                  1                                                                                                                                                                                                                                                                                                                                 
                                  |  4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314        
         Q8ZR49_SALTY     - ------MNETPLRLLEMLTQTREDLWRAAQALTERGVTRIILTGSGTSYHGALTARTFMQRWCALPVDVCWPFMLDDETLARSGKALVVGISQGGGSLSTLAAMERARNVGHITASMAGVAPATIDRAADYILTVPCGEETAGAKTKGYHCTVLNLMLLALAVAGQQQRLDGEQRRSLLLRMEKTFNHLPALVTASQAWAQTNALALRDSADIRLTGPATLFGTVQEGALKMLETLRCPVSGYEFEEFIHGIYNAFNAQSALIMLDPQPDARQDRLAQILGEWTPSIYRIGPQVENNGLNLNFPFVNDEDFAVFEYIIPLQMLCAILP 322
               SCOP domains d3knzd_ D: automated matches                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhhhhh..eeeehhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhh..eeeee.....hhhhhhh.ee.......------.hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhhhhhhh..eeeeehhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhh....eeeee.........ee.........hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3knz D  -5 NLYFQGmNETPLRLLEmLTQTREDLWRAAQALTERGVTRIILTGSGTSYHGALTARTFmQRWCALPVDVCWPFmLDDETLARSGKALVVGISQGGGSLSTLAAmERARNVGHITASmAGVAPATIDRAADYILTVPCGE------TKGYHCTVLNLmLLALAVAGQQQRLDGEQRRSLLLRmEKTFNHLPALVTASQAWAQTNALALRDSADIRLTGPATLFGTVQEGALKmLETLRCPVSGYEFEEFIHGIYNAFNAQSALImLDPQPDARQDRLAQILGEWTPSIYRIGPQVENNGLNLNFPFVNDEDFAVFEYIIPLQmLCAILP 322
                                  |  4      | 14        24        34        44        54        64   |    74        84        94   |   104      |114       124        |-     | 144      |154       164       174 |     184       194       204       214       224 |     234       244       254   |   264       274       284       294       304       314 |      
                                  1-MSE    11-MSE                                    53-MSE         68-MSE                        98-MSE      111-MSE               133    140        151-MSE                  176-MSE                                           226-MSE                         258-MSE                                                   316-MSE  


Chain E from PDB  Type:PROTEIN  Length:322
 aligned with Q8ZR49_SALTY | Q8ZR49 from UniProtKB/TrEMBL  Length:347

    Alignment length:328
                                  1                                                                                                                                                                                                                                                                                                                                 
                                  |  4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314        
         Q8ZR49_SALTY     - ------MNETPLRLLEMLTQTREDLWRAAQALTERGVTRIILTGSGTSYHGALTARTFMQRWCALPVDVCWPFMLDDETLARSGKALVVGISQGGGSLSTLAAMERARNVGHITASMAGVAPATIDRAADYILTVPCGEETAGAKTKGYHCTVLNLMLLALAVAGQQQRLDGEQRRSLLLRMEKTFNHLPALVTASQAWAQTNALALRDSADIRLTGPATLFGTVQEGALKMLETLRCPVSGYEFEEFIHGIYNAFNAQSALIMLDPQPDARQDRLAQILGEWTPSIYRIGPQVENNGLNLNFPFVNDEDFAVFEYIIPLQMLCAILP 322
               SCOP domains d3knze_ E: automated matches                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhhhhh..eeeehhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhh..eeeee.....hhhhhhh.ee.......------.hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhhhhhhh..eeeeehhhhhhh........eeeeee....hhhhhhhhhhhh.....eeeee.........ee.........hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3knz E  -5 NLYFQGmNETPLRLLEmLTQTREDLWRAAQALTERGVTRIILTGSGTSYHGALTARTFmQRWCALPVDVCWPFmLDDETLARSGKALVVGISQGGGSLSTLAAmERARNVGHITASmAGVAPATIDRAADYILTVPCGE------TKGYHCTVLNLmLLALAVAGQQQRLDGEQRRSLLLRmEKTFNHLPALVTASQAWAQTNALALRDSADIRLTGPATLFGTVQEGALKmLETLRCPVSGYEFEEFIHGIYNAFNAQSALImLDPQPDARQDRLAQILGEWTPSIYRIGPQVENNGLNLNFPFVNDEDFAVFEYIIPLQmLCAILP 322
                                  |  4      | 14        24        34        44        54        64   |    74        84        94   |   104      |114       124        |-     | 144      |154       164       174 |     184       194       204       214       224 |     234       244       254   |   264       274       284       294       304       314 |      
                                  1-MSE    11-MSE                                    53-MSE         68-MSE                        98-MSE      111-MSE               133    140        151-MSE                  176-MSE                                           226-MSE                         258-MSE                                                   316-MSE  


Chain F from PDB  Type:PROTEIN  Length:317
 aligned with Q8ZR49_SALTY | Q8ZR49 from UniProtKB/TrEMBL  Length:347

    Alignment length:326
                                1                                                                                                                                                                                                                                                                                                                                 
                                |    6        16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316      
         Q8ZR49_SALTY     - ----MNETPLRLLEMLTQTREDLWRAAQALTERGVTRIILTGSGTSYHGALTARTFMQRWCALPVDVCWPFMLDDETLARSGKALVVGISQGGGSLSTLAAMERARNVGHITASMAGVAPATIDRAADYILTVPCGEETAGAKTKGYHCTVLNLMLLALAVAGQQQRLDGEQRRSLLLRMEKTFNHLPALVTASQAWAQTNALALRDSADIRLTGPATLFGTVQEGALKMLETLRCPVSGYEFEEFIHGIYNAFNAQSALIMLDPQPDARQDRLAQILGEWTPSIYRIGPQVENNGLNLNFPFVNDEDFAVFEYIIPLQMLCAILP 322
               SCOP domains d3knzf_ F: automated matches                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -------------------------------SIS-3knzF01 F:28-156                                                                                                             ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) -------------------------------SIS-3knzF02 F:28-156                                                                                                             ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) -------------------------------SIS-3knzF03 F:28-156                                                                                                             ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) -------------------------------SIS-3knzF04 F:28-156                                                                                                             ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (4)
           Pfam domains (5) -------------------------------SIS-3knzF05 F:28-156                                                                                                             ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (5)
           Pfam domains (6) -------------------------------SIS-3knzF06 F:28-156                                                                                                             ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (6)
         Sec.struct. author hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhhhhh..eeeehhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhh.eeeee.....hhhhh...ee....---------.hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhh...eeeeee....hhhhhhhhhhhh.....eeeee.........ee.........hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3knz F  -3 YFQGmNETPLRLLEmLTQTREDLWRAAQALTERGVTRIILTGSGTSYHGALTARTFmQRWCALPVDVCWPFmLDDETLARSGKALVVGISQGGGSLSTLAAmERARNVGHITASmAGVAPATIDRAADYILTVP---------TKGYHCTVLNLmLLALAVAGQQQRLDGEQRRSLLLRmEKTFNHLPALVTASQAWAQTNALALRDSADIRLTGPATLFGTVQEGALKmLETLRCPVSGYEFEEFIHGIYNAFNAQSALImLDPQPDARQDRLAQILGEWTPSIYRIGPQVENNGLNLNFPFVNDEDFAVFEYIIPLQmLCAILP 322
                                |    6    |   16        26        36        46      | 56        66 |      76        86        96 |     106    |  116       126   |     -   |   146    |  156       166       176       186       196       206       216       226       236       246       256 |     266       276       286       296       306       316      
                                1-MSE    11-MSE                                    53-MSE         68-MSE                        98-MSE      111-MSE            130       140        151-MSE                  176-MSE                                           226-MSE                         258-MSE                                                   316-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3KNZ)

(-) Pfam Domains  (1, 6)

Asymmetric Unit
(-)
Clan: SIS (53)
(-)
Family: SIS (23)
(-)
Salmonella typhimurium (1)
1aSIS-3knzF01F:28-156
1bSIS-3knzF02F:28-156
1cSIS-3knzF03F:28-156
1dSIS-3knzF04F:28-156
1eSIS-3knzF05F:28-156
1fSIS-3knzF06F:28-156

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (Q8ZR49_SALTY | Q8ZR49)
molecular function
    GO:0030246    carbohydrate binding    Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
    GO:0004360    glutamine-fructose-6-phosphate transaminase (isomerizing) activity    Catalysis of the reaction: beta-D-fructose 6-phosphate + L-glutamine = D-glucosamine 6-phosphate + L-glutamate.
biological process
    GO:0006047    UDP-N-acetylglucosamine metabolic process    The chemical reactions and pathways involving UDP-N-acetylglucosamine, a substance composed of N-acetylglucosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate.
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0006002    fructose 6-phosphate metabolic process    The chemical reactions and pathways involving fructose 6-phosphate, also known as F6P. The D-enantiomer is an important intermediate in glycolysis, gluconeogenesis, and fructose metabolism.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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