Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Biol.Unit 1 - manually
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
collapse expand < >
Image Biol.Unit 1 - manually
Biol.Unit 1 - manually  (Jmol Viewer)
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE ISOCHORISMATASE FROM STREPTOMYCES AVERMITILIS
 
Authors :  J. B. Bonanno, M. Dickey, K. T. Bain, S. Chang, S. Ozyurt, S. Wasserman, J. M. Sauder, S. K. Burley, S. C. Almo, New York Sgx Research Center Structural Genomics (Nysgxrc)
Date :  06 Nov 09  (Deposition) - 24 Nov 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Biol. Unit 3:  I,J,K,L  (1x)
Keywords :  Structural Genomics, Unknown Function, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. B. Bonanno, M. Dickey, K. T. Bain, S. Chang, S. Ozyurt, S. Wasserman, J. M. Sauder, S. K. Burley, S. C. Almo
Crystal Structure Of A Putative Isochorismatase From Streptomyces Avermitilis
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE ISOCHORISMATASE
    ChainsA, B, C, D, E, F, G, H, I, J, K, L
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidMODIFIED PET26
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    GeneDHBB1, SAV1388, SAV_1388
    Organism ScientificSTREPTOMYCES AVERMITILIS
    Organism Taxid33903

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit ABCDEFGHIJKL
Biological Unit 1 (1x)ABCD        
Biological Unit 2 (1x)    EFGH    
Biological Unit 3 (1x)        IJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1SO4-1Ligand/IonSULFATE ION
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP B:160 , ARG B:164 , ARG B:192 , ASP C:160 , ARG C:164 , ARG C:192BINDING SITE FOR RESIDUE SO4 B 2
2AC2SOFTWARETHR H:127 , TRP H:128 , TRP K:128 , ASP K:134BINDING SITE FOR RESIDUE SO4 K 1

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3KL2)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Phe A:176 -Leu A:177
2Phe B:176 -Leu B:177
3Phe C:176 -Leu C:177
4Phe D:176 -Leu D:177
5Phe E:176 -Leu E:177
6Phe F:176 -Leu F:177
7Phe G:176 -Leu G:177
8Phe H:176 -Leu H:177
9Phe I:176 -Leu I:177
10Phe J:176 -Leu J:177
11Phe K:176 -Leu K:177
12Phe L:176 -Leu L:177

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3KL2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3KL2)

(-) Exons   (0, 0)

(no "Exon" information available for 3KL2)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:203
 aligned with Q82NB5_STRAW | Q82NB5 from UniProtKB/TrEMBL  Length:235

    Alignment length:203
                                                                                                                                                                                                                                   235 
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233 | 
         Q82NB5_STRAW    34 EKLELDPARTAIVLIEYQNEFTSDGGVLHGAVADVMQHTGMLANTVAVVDAARQAGVPIMHAPITFAEGYGELTRHPYGILKGVVDGKAFVKGTWGAAIVDELAPVNGDIVIEGKRGLDTFASTNLDFILRSKGVDTIVLGGFLTNCCVESTMRTGYERGFRVITLTDCVAATSQEEHNNAISYDFPMFSVPMTSADVIAAL-   -
               SCOP domains d3kl2a_ A: automated matches                                                                                                                                                                                SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhh.eeeeee..hhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee................hhhhhhhhhh...........hhhhh.....ee.......hhhhhhhhhhhhhhhh..eeeeeee...hhhhhhhhhhhhh..eeeeeeeeee..hhhhhhhhhhhhhhhhheeehhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kl2 A  34 EKLELDPARTAIVLIEYQNEFTSDGGVLHGAVADVMQHTGMLANTVAVVDAARQAGVPIMHAPITFAEGYGELTRHPYGILKGVVDGKAFVKGTWGAAIVDELAPVNGDIVIEGKRGLDTFASTNLDFILRSKGVDTIVLGGFLTNCCVESTMRTGYERGFRVITLTDCVAATSQEEHNNAISYDFPMFSVPMTSADVIAALE 236
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233   

Chain B from PDB  Type:PROTEIN  Length:200
 aligned with Q82NB5_STRAW | Q82NB5 from UniProtKB/TrEMBL  Length:235

    Alignment length:200
                                                                                                                                                                                                                                235 
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226        |-
         Q82NB5_STRAW    37 ELDPARTAIVLIEYQNEFTSDGGVLHGAVADVMQHTGMLANTVAVVDAARQAGVPIMHAPITFAEGYGELTRHPYGILKGVVDGKAFVKGTWGAAIVDELAPVNGDIVIEGKRGLDTFASTNLDFILRSKGVDTIVLGGFLTNCCVESTMRTGYERGFRVITLTDCVAATSQEEHNNAISYDFPMFSVPMTSADVIAAL-   -
               SCOP domains d3kl2b_ B: automated matches                                                                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhh.eeeeee..hhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee................hhhhhhhhh............hhhhh.....ee.............hhhhhhhhhh..eeeeeee...hhhhhhhhhhhhh..eeeeeeeeee..hhhhhhhhhhhhhhhhheeehhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kl2 B  37 ELDPARTAIVLIEYQNEFTSDGGVLHGAVADVMQHTGMLANTVAVVDAARQAGVPIMHAPITFAEGYGELTRHPYGILKGVVDGKAFVKGTWGAAIVDELAPVNGDIVIEGKRGLDTFASTNLDFILRSKGVDTIVLGGFLTNCCVESTMRTGYERGFRVITLTDCVAATSQEEHNNAISYDFPMFSVPMTSADVIAALE 236
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236

Chain C from PDB  Type:PROTEIN  Length:200
 aligned with Q82NB5_STRAW | Q82NB5 from UniProtKB/TrEMBL  Length:235

    Alignment length:200
                                                                                                                                                                                                                                235 
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226        |-
         Q82NB5_STRAW    37 ELDPARTAIVLIEYQNEFTSDGGVLHGAVADVMQHTGMLANTVAVVDAARQAGVPIMHAPITFAEGYGELTRHPYGILKGVVDGKAFVKGTWGAAIVDELAPVNGDIVIEGKRGLDTFASTNLDFILRSKGVDTIVLGGFLTNCCVESTMRTGYERGFRVITLTDCVAATSQEEHNNAISYDFPMFSVPMTSADVIAAL-   -
               SCOP domains d3kl2c_ C: automated matches                                                                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhh.eeeeee..hhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee................hhhhhhhhh............hhhhh.....ee.......hhhhh.hhhhhhhhh...eeeeeee...hhhhhhhhhhhhh..eeeeeeeeee..hhhhhhhhhhhhhhhhheeehhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kl2 C  37 ELDPARTAIVLIEYQNEFTSDGGVLHGAVADVMQHTGMLANTVAVVDAARQAGVPIMHAPITFAEGYGELTRHPYGILKGVVDGKAFVKGTWGAAIVDELAPVNGDIVIEGKRGLDTFASTNLDFILRSKGVDTIVLGGFLTNCCVESTMRTGYERGFRVITLTDCVAATSQEEHNNAISYDFPMFSVPMTSADVIAALE 236
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236

Chain D from PDB  Type:PROTEIN  Length:200
 aligned with Q82NB5_STRAW | Q82NB5 from UniProtKB/TrEMBL  Length:235

    Alignment length:200
                                                                                                                                                                                                                                235 
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226        |-
         Q82NB5_STRAW    37 ELDPARTAIVLIEYQNEFTSDGGVLHGAVADVMQHTGMLANTVAVVDAARQAGVPIMHAPITFAEGYGELTRHPYGILKGVVDGKAFVKGTWGAAIVDELAPVNGDIVIEGKRGLDTFASTNLDFILRSKGVDTIVLGGFLTNCCVESTMRTGYERGFRVITLTDCVAATSQEEHNNAISYDFPMFSVPMTSADVIAAL-   -
               SCOP domains d3kl2d_ D: automated matches                                                                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhh.eeeeee..hhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee................hhhhhhhhh............hhhhh.....ee.......hhhhh.hhhhhhhhh...eeeeeee...hhhhhhhhhhhhh..eeeeeeeeee..hhhhhhhhhhhhhhhhheeehhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kl2 D  37 ELDPARTAIVLIEYQNEFTSDGGVLHGAVADVMQHTGMLANTVAVVDAARQAGVPIMHAPITFAEGYGELTRHPYGILKGVVDGKAFVKGTWGAAIVDELAPVNGDIVIEGKRGLDTFASTNLDFILRSKGVDTIVLGGFLTNCCVESTMRTGYERGFRVITLTDCVAATSQEEHNNAISYDFPMFSVPMTSADVIAALE 236
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236

Chain E from PDB  Type:PROTEIN  Length:204
 aligned with Q82NB5_STRAW | Q82NB5 from UniProtKB/TrEMBL  Length:235

    Alignment length:204
                                                                                                                                                                                                                                 235    
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235    
         Q82NB5_STRAW    36 LELDPARTAIVLIEYQNEFTSDGGVLHGAVADVMQHTGMLANTVAVVDAARQAGVPIMHAPITFAEGYGELTRHPYGILKGVVDGKAFVKGTWGAAIVDELAPVNGDIVIEGKRGLDTFASTNLDFILRSKGVDTIVLGGFLTNCCVESTMRTGYERGFRVITLTDCVAATSQEEHNNAISYDFPMFSVPMTSADVIAAL----   -
               SCOP domains d3kl2e_ E: automated matches                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhh.eeeeee..hhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee................hhhhhhhhh......hhhhh.hhhhh.....ee.............hhhhhhhhh...eeeeeee...hhhhhhhhhhhhh..eeeeeeeeee..hhhhhhhhhhhhhhhhheeehhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3kl2 E  36 LELDPARTAIVLIEYQNEFTSDGGVLHGAVADVMQHTGMLANTVAVVDAARQAGVPIMHAPITFAEGYGELTRHPYGILKGVVDGKAFVKGTWGAAIVDELAPVNGDIVIEGKRGLDTFASTNLDFILRSKGVDTIVLGGFLTNCCVESTMRTGYERGFRVITLTDCVAATSQEEHNNAISYDFPMFSVPMTSADVIAALEGHH 239
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235    

Chain F from PDB  Type:PROTEIN  Length:201
 aligned with Q82NB5_STRAW | Q82NB5 from UniProtKB/TrEMBL  Length:235

    Alignment length:201
                                                                                                                                                                                                                                 235 
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235 
         Q82NB5_STRAW    36 LELDPARTAIVLIEYQNEFTSDGGVLHGAVADVMQHTGMLANTVAVVDAARQAGVPIMHAPITFAEGYGELTRHPYGILKGVVDGKAFVKGTWGAAIVDELAPVNGDIVIEGKRGLDTFASTNLDFILRSKGVDTIVLGGFLTNCCVESTMRTGYERGFRVITLTDCVAATSQEEHNNAISYDFPMFSVPMTSADVIAAL-   -
               SCOP domains d3kl2f_ F: automated matches                                                                                                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhh.eeeeee..hhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee................hhhhhhhhhh...........hhhhh.....ee.............hhhhhhhhhh..eeeeeee...hhhhhhhhhhhhh..eeeeeeeeee..hhhhhhhhhhhhhhhhheeehhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kl2 F  36 LELDPARTAIVLIEYQNEFTSDGGVLHGAVADVMQHTGMLANTVAVVDAARQAGVPIMHAPITFAEGYGELTRHPYGILKGVVDGKAFVKGTWGAAIVDELAPVNGDIVIEGKRGLDTFASTNLDFILRSKGVDTIVLGGFLTNCCVESTMRTGYERGFRVITLTDCVAATSQEEHNNAISYDFPMFSVPMTSADVIAALE 236
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235 

Chain G from PDB  Type:PROTEIN  Length:200
 aligned with Q82NB5_STRAW | Q82NB5 from UniProtKB/TrEMBL  Length:235

    Alignment length:200
                                                                                                                                                                                                                                235 
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226        |-
         Q82NB5_STRAW    37 ELDPARTAIVLIEYQNEFTSDGGVLHGAVADVMQHTGMLANTVAVVDAARQAGVPIMHAPITFAEGYGELTRHPYGILKGVVDGKAFVKGTWGAAIVDELAPVNGDIVIEGKRGLDTFASTNLDFILRSKGVDTIVLGGFLTNCCVESTMRTGYERGFRVITLTDCVAATSQEEHNNAISYDFPMFSVPMTSADVIAAL-   -
               SCOP domains d3kl2g_ G: automated matches                                                                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhh.eeeeee..hhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee................hhhhhhhhhh...........hhhhh.....ee.............hhhhhhhhh...eeeeeee...hhhhhhhhhhhhh..eeeeeeeeee..hhhhhhhhhhhhhhhhheeehhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kl2 G  37 ELDPARTAIVLIEYQNEFTSDGGVLHGAVADVMQHTGMLANTVAVVDAARQAGVPIMHAPITFAEGYGELTRHPYGILKGVVDGKAFVKGTWGAAIVDELAPVNGDIVIEGKRGLDTFASTNLDFILRSKGVDTIVLGGFLTNCCVESTMRTGYERGFRVITLTDCVAATSQEEHNNAISYDFPMFSVPMTSADVIAALE 236
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236

Chain H from PDB  Type:PROTEIN  Length:200
 aligned with Q82NB5_STRAW | Q82NB5 from UniProtKB/TrEMBL  Length:235

    Alignment length:200
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235
         Q82NB5_STRAW    36 LELDPARTAIVLIEYQNEFTSDGGVLHGAVADVMQHTGMLANTVAVVDAARQAGVPIMHAPITFAEGYGELTRHPYGILKGVVDGKAFVKGTWGAAIVDELAPVNGDIVIEGKRGLDTFASTNLDFILRSKGVDTIVLGGFLTNCCVESTMRTGYERGFRVITLTDCVAATSQEEHNNAISYDFPMFSVPMTSADVIAAL 235
               SCOP domains d3kl2h_ H: automated matches                                                                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhh.eeeeee..hhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee................hhhhhhhhh............hhhhh.....ee.......hhhhh.hhhhhhhhhh..eeeeeee...hhhhhhhhhhhhh..eeeeeeeeee..hhhhhhhhhhhhhhhhheeehhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kl2 H  36 LELDPARTAIVLIEYQNEFTSDGGVLHGAVADVMQHTGMLANTVAVVDAARQAGVPIMHAPITFAEGYGELTRHPYGILKGVVDGKAFVKGTWGAAIVDELAPVNGDIVIEGKRGLDTFASTNLDFILRSKGVDTIVLGGFLTNCCVESTMRTGYERGFRVITLTDCVAATSQEEHNNAISYDFPMFSVPMTSADVIAAL 235
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235

Chain I from PDB  Type:PROTEIN  Length:199
 aligned with Q82NB5_STRAW | Q82NB5 from UniProtKB/TrEMBL  Length:235

    Alignment length:199
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226         
         Q82NB5_STRAW    37 ELDPARTAIVLIEYQNEFTSDGGVLHGAVADVMQHTGMLANTVAVVDAARQAGVPIMHAPITFAEGYGELTRHPYGILKGVVDGKAFVKGTWGAAIVDELAPVNGDIVIEGKRGLDTFASTNLDFILRSKGVDTIVLGGFLTNCCVESTMRTGYERGFRVITLTDCVAATSQEEHNNAISYDFPMFSVPMTSADVIAAL 235
               SCOP domains d3kl2i_ I: automated matches                                                                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhh.eeeeee..hhhhhh........hhhhhhhhhhhhhhhhhhhhhhhh...eeee................hhhhhhhhh............hhhhh.....ee.............hhhhhhhhhh..eeeeeee...hhhhhhhhhhhhh..eeeeeeeeee..hhhhhhhhhhhhhhhhheeehhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kl2 I  37 ELDPARTAIVLIEYQNEFTSDGGVLHGAVADVMQHTGMLANTVAVVDAARQAGVPIMHAPITFAEGYGELTRHPYGILKGVVDGKAFVKGTWGAAIVDELAPVNGDIVIEGKRGLDTFASTNLDFILRSKGVDTIVLGGFLTNCCVESTMRTGYERGFRVITLTDCVAATSQEEHNNAISYDFPMFSVPMTSADVIAAL 235
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226         

Chain J from PDB  Type:PROTEIN  Length:200
 aligned with Q82NB5_STRAW | Q82NB5 from UniProtKB/TrEMBL  Length:235

    Alignment length:200
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235
         Q82NB5_STRAW    36 LELDPARTAIVLIEYQNEFTSDGGVLHGAVADVMQHTGMLANTVAVVDAARQAGVPIMHAPITFAEGYGELTRHPYGILKGVVDGKAFVKGTWGAAIVDELAPVNGDIVIEGKRGLDTFASTNLDFILRSKGVDTIVLGGFLTNCCVESTMRTGYERGFRVITLTDCVAATSQEEHNNAISYDFPMFSVPMTSADVIAAL 235
               SCOP domains d3kl2j_ J: automated matches                                                                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhh.eeeeee..hhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee...............hhhhhhhhhh............hhhhh.....ee.............hhhhhhhhhh..eeeeeee...hhhhhhhhhhhhh..eeeeeeeeee..hhhhhhhhhhhhhhhhheeehhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kl2 J  36 LELDPARTAIVLIEYQNEFTSDGGVLHGAVADVMQHTGMLANTVAVVDAARQAGVPIMHAPITFAEGYGELTRHPYGILKGVVDGKAFVKGTWGAAIVDELAPVNGDIVIEGKRGLDTFASTNLDFILRSKGVDTIVLGGFLTNCCVESTMRTGYERGFRVITLTDCVAATSQEEHNNAISYDFPMFSVPMTSADVIAAL 235
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235

Chain K from PDB  Type:PROTEIN  Length:200
 aligned with Q82NB5_STRAW | Q82NB5 from UniProtKB/TrEMBL  Length:235

    Alignment length:200
                                                                                                                                                                                                                                235 
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226        |-
         Q82NB5_STRAW    37 ELDPARTAIVLIEYQNEFTSDGGVLHGAVADVMQHTGMLANTVAVVDAARQAGVPIMHAPITFAEGYGELTRHPYGILKGVVDGKAFVKGTWGAAIVDELAPVNGDIVIEGKRGLDTFASTNLDFILRSKGVDTIVLGGFLTNCCVESTMRTGYERGFRVITLTDCVAATSQEEHNNAISYDFPMFSVPMTSADVIAAL-   -
               SCOP domains d3kl2k_ K: automated matches                                                                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee..hhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee................hhhhhhhhhh...........hhhhh.....ee.......hhhhh.hhhhhhhhh...eeeeeee...hhhhhhhhhhhhh..eeeeeeeeee..hhhhhhhhhhhhhhhhheeehhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kl2 K  37 ELDPARTAIVLIEYQNEFTSDGGVLHGAVADVMQHTGMLANTVAVVDAARQAGVPIMHAPITFAEGYGELTRHPYGILKGVVDGKAFVKGTWGAAIVDELAPVNGDIVIEGKRGLDTFASTNLDFILRSKGVDTIVLGGFLTNCCVESTMRTGYERGFRVITLTDCVAATSQEEHNNAISYDFPMFSVPMTSADVIAALE 236
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236

Chain L from PDB  Type:PROTEIN  Length:200
 aligned with Q82NB5_STRAW | Q82NB5 from UniProtKB/TrEMBL  Length:235

    Alignment length:200
                                                                                                                                                                                                                                235 
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226        |-
         Q82NB5_STRAW    37 ELDPARTAIVLIEYQNEFTSDGGVLHGAVADVMQHTGMLANTVAVVDAARQAGVPIMHAPITFAEGYGELTRHPYGILKGVVDGKAFVKGTWGAAIVDELAPVNGDIVIEGKRGLDTFASTNLDFILRSKGVDTIVLGGFLTNCCVESTMRTGYERGFRVITLTDCVAATSQEEHNNAISYDFPMFSVPMTSADVIAAL-   -
               SCOP domains d3kl2l_ L: automated matches                                                                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------Isochorismatase-3kl2L01 L:43-230                                                                                                                                                            ------ Pfam domains (1)
           Pfam domains (2) ------Isochorismatase-3kl2L02 L:43-230                                                                                                                                                            ------ Pfam domains (2)
           Pfam domains (3) ------Isochorismatase-3kl2L03 L:43-230                                                                                                                                                            ------ Pfam domains (3)
           Pfam domains (4) ------Isochorismatase-3kl2L04 L:43-230                                                                                                                                                            ------ Pfam domains (4)
           Pfam domains (5) ------Isochorismatase-3kl2L05 L:43-230                                                                                                                                                            ------ Pfam domains (5)
           Pfam domains (6) ------Isochorismatase-3kl2L06 L:43-230                                                                                                                                                            ------ Pfam domains (6)
           Pfam domains (7) ------Isochorismatase-3kl2L07 L:43-230                                                                                                                                                            ------ Pfam domains (7)
           Pfam domains (8) ------Isochorismatase-3kl2L08 L:43-230                                                                                                                                                            ------ Pfam domains (8)
           Pfam domains (9) ------Isochorismatase-3kl2L09 L:43-230                                                                                                                                                            ------ Pfam domains (9)
          Pfam domains (10) ------Isochorismatase-3kl2L10 L:43-230                                                                                                                                                            ------ Pfam domains (10)
          Pfam domains (11) ------Isochorismatase-3kl2L11 L:43-230                                                                                                                                                            ------ Pfam domains (11)
          Pfam domains (12) ------Isochorismatase-3kl2L12 L:43-230                                                                                                                                                            ------ Pfam domains (12)
         Sec.struct. author ..hhh.eeeeee..hhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee................hhhhhhhhhh...........hhhhh.....ee.............hhhhhhhhh...eeeeeee...hhhhhhhhhhhhh..eeeeeeeeee..hhhhhhhhhhhhhhhhheeehhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kl2 L  37 ELDPARTAIVLIEYQNEFTSDGGVLHGAVADVMQHTGMLANTVAVVDAARQAGVPIMHAPITFAEGYGELTRHPYGILKGVVDGKAFVKGTWGAAIVDELAPVNGDIVIEGKRGLDTFASTNLDFILRSKGVDTIVLGGFLTNCCVESTMRTGYERGFRVITLTDCVAATSQEEHNNAISYDFPMFSVPMTSADVIAALE 236
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3KL2)

(-) Pfam Domains  (1, 12)

Asymmetric Unit

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L   (Q82NB5_STRAW | Q82NB5)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Phe A:176 - Leu A:177   [ RasMol ]  
    Phe B:176 - Leu B:177   [ RasMol ]  
    Phe C:176 - Leu C:177   [ RasMol ]  
    Phe D:176 - Leu D:177   [ RasMol ]  
    Phe E:176 - Leu E:177   [ RasMol ]  
    Phe F:176 - Leu F:177   [ RasMol ]  
    Phe G:176 - Leu G:177   [ RasMol ]  
    Phe H:176 - Leu H:177   [ RasMol ]  
    Phe I:176 - Leu I:177   [ RasMol ]  
    Phe J:176 - Leu J:177   [ RasMol ]  
    Phe K:176 - Leu K:177   [ RasMol ]  
    Phe L:176 - Leu L:177   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3kl2
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q82NB5_STRAW | Q82NB5
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  Q82NB5_STRAW | Q82NB5
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 3KL2)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3KL2)